Input Cluster (n=200) YAL001C TFC3 YAL060W BDH1 YAL064W YAR002W NUP60 YAR050W FLO1 YBL086C YBL101C ECM21 YBR001C NTH2 YBR002C RER2 YBR003W COQ1 YBR009C HHF1 YBR010W HHT1 YBR018C GAL7 YBR021W FUR4 YBR034C HMT1 YBR043C AQR2 YBR046C ZTA1 YBR047W YBR050C REG2 YBR067C TIP1 YBR222C FAT2 YCL073C YCR065W HCM1 YCR091W KIN82 YCR095C YCR102C YDL054C MCH1 YDL128W VCX1 YDL235C YPD1 YDR036C YDR037W KRS1 YDR139C RUB1 YDR223W YDR231C COX20 YDR232W HEM1 YDR276C PMP3 YDR281C PHM6 YDR345C HXT3 YDR365C YDR475C JIP4 YDR506C YDR508C GNP1 YDR525W-A SNA2 YDR528W HLR1 YEL017C-A PMP2 YEL017W YEL052W AFG1 YEL053C MAK10 YEL062W NPR2 YEL071W DLD3 YER011W TIR1 YER028C YER049W YER062C HOR2 YER068W MOT2 YER130C YER169W RPH1 YFL066C YFR034C PHO4 YGL033W HOP2 YGL035C MIG1 YGL036W YGL037C PNC1 YGL040C HEM2 YGL134W PCL10 YGL158W RCK1 YGL159W YGL209W MIG2 YGR023W MTL1 YGR146C YGR189C CRH1 YGR191W HIP1 YGR264C MES1 YHL015W RPS20 YHL050C YHR001W OSH7 YHR004C NEM1 YHR091C MSR1 YHR094C HXT1 YHR178W STB5 YHR206W SKN7 YIL033C BCY1 YIL068C SEC6 YIL069C RPS24B YIL096C YIL166C YIL176C YIR041W YJL083W YJL084C YJL111W CCT7 YJL159W HSP150 YJL163C YJL210W PEX2 YJL212C OPT1 YJL214W HXT8 YJL216C YJL223C PAU1 YJR001W YJR016C ILV3 YJR043C POL32 YJR091C JSN1 YJR092W BUD4 YJR127C ZMS1 YJR138W IML1 YJR147W HMS2 YJR152W DAL5 YKL039W PTM1 YKL040C NFU1 YKL103C LAP4 YKL106W AAT1 YKL162C YKL163W PIR3 YKR075C YLL024C SSA2 YLL039C UBI4 YLR046C YLR081W GAL2 YLR108C YLR109W AHP1 YLR152C YLR155C ASP3-1 YLR157C ASP3-2 YLR158C ASP3-3 YLR160C ASP3-4 YLR228C ECM22 YLR229C CDC42 YLR297W YLR378C SEC61 YLR431C YLR432W IMD3 YLR460C YML018C YML054C CYB2 YMR002W YMR011W HXT2 YMR034C YMR035W IMP2 YMR142C RPL13B YMR145C NDE1 YMR243C ZRC1 YMR244C-A YMR251W-A HOR7 YMR291W YMR305C SCW10 YMR306W FKS3 YNL030W HHF2 YNL031C HHT2 YNL036W NCE103 YNL042W BOP3 YNL065W AQR1 YNL096C RPS7B YNL097C PHO23 YNL124W NAF1 YNL125C ESBP6 YNL134C YNL142W MEP2 YNL145W MFA2 YNL206C RTT106 YNL221C POP1 YNL268W LYP1 YNL308C KRI1 YNL328C MDJ2 YNR001C CIT1 YNR014W YNR018W YOL012C HTZ1 YOL022C YOL053W YOL136C PFK27 YOR003W YSP3 YOR043W WHI2 YOR062C YOR092W ECM3 YOR107W RGS2 YOR136W IDH2 YOR179C YOR243C PUS7 YOR244W ESA1 YOR273C TPO4 YOR306C MCH5 YOR322C YPL079W RPL21B YPL135W ISU1 YPL147W PXA1 YPL148C PPT2 YPL150W YPL151C PRP46 YPL187W MF(ALPHA)1 YPL188W POS5 YPL262W FUM1 YPL263C KEL3 YPR016C TIF6 YPR025C CCL1 YPR026W ATH1 YPR074C TKL1 YPR129W SCD6 YPR157W YPR192W AQY1 YPR204W Genes Not Found: MIPS Functional Classification Category p-value In Category from Cluster k f cell wall 1.50396e-08 FLO1 TIP1 TIR1 CRH1 HSP150 BUD4 PIR3 ASP3-1 ASP3-2 ASP3-3 ASP3-4 11 38 TRANSPORT FACILITATION 5.39348e-06 FUR4 AQR2 YCL073C VCX1 HXT3 GNP1 PMP2 HIP1 HXT1 YIL166C OPT1 HXT8 YJR001W DAL5 GAL2 SEC61 HXT2 ZRC1 AQR1 ESBP6 MEP2 LYP1 TPO4 MCH5 PXA1 AQY1 26 312 cellular import 7.14857e-05 FUR4 HXT3 HIP1 HXT1 HXT8 DAL5 GAL2 HXT2 ZRC1 MEP2 LYP1 SCD6 12 100 plasma membrane 0.000197383 FUR4 HXT3 PMP2 HIP1 HXT1 SEC6 HXT8 DAL5 GAL2 CDC42 HXT2 ZRC1 MEP2 LYP1 14 145 CELL RESCUE, DEFENSE AND VIRULENCE 0.000513607 AQR2 TIP1 YCL073C TIR1 HOR2 SKN7 BCY1 HSP150 PAU1 HMS2 PIR3 UBI4 YLR046C AHP1 ZRC1 HOR7 AQR1 MDJ2 TPO4 ATH1 20 278 stress response 0.00132605 TIP1 TIR1 HOR2 SKN7 BCY1 HSP150 PAU1 HMS2 PIR3 UBI4 AHP1 HOR7 MDJ2 ATH1 14 175 chromosome 0.00251429 HHF1 HHT1 HOP2 HHF2 HHT2 HTZ1 6 44 MIPS Phenotypes Category p-value In Category from Cluster k f Oxidizing agents 0.000443623 HIP1 SKN7 HSP150 UBI4 IMP2 WHI2 6 32 MIPS Subcellular Localization Category p-value In Category from Cluster k f cell wall 1.47413e-09 FLO1 TIP1 TIR1 CRH1 HSP150 PIR3 SSA2 ASP3-1 ASP3-2 ASP3-3 ASP3-4 SCW10 12 39 plasma membrane 0.000151393 FUR4 PMP3 HXT3 PMP2 HIP1 HXT1 SEC6 HXT8 DAL5 GAL2 CDC42 HXT2 ZRC1 MEP2 LYP1 15 159 MIPS Protein Complexes Category p-value In Category from Cluster k f Nucleosomal protein complex 6.37246e-05 HHF1 HHT1 HHF2 HHT2 4 8 MIPS Protein Classes Category p-value In Category from Cluster k f Major facilitator superfamily proteins (MFS) 2.9798e-09 FUR4 AQR2 YCL073C HXT3 GNP1 HIP1 HXT1 YIL166C HXT8 YJR001W DAL5 PTM1 GAL2 SEC61 HXT2 ZRC1 AQR1 ESBP6 MEP2 LYP1 TPO4 21 142 Histones 1.24424e-05 HHF1 HHT1 HHF2 HHT2 HTZ1 5 11 H4 0.00101352 HHF1 HHF2 2 2 Cys2His2 zinc-finger 0.00173371 YER028C YER130C RPH1 MIG1 MIG2 ZMS1 6 41 H3 0.0029765 HHT1 HHT2 2 3 GO Molecular Function Category p-value In Category from Cluster k f asparaginase [GO:0004067] 1.43638e-05 ASP3-1 ASP3-2 ASP3-3 ASP3-4 4 6 hydrolase, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [GO:0016811] 0.000103216 PNC1 ASP3-1 ASP3-2 ASP3-3 ASP3-4 5 16 monosaccharide transporter [GO:0015145] 0.000254088 HXT3 HXT1 HXT8 GAL2 HXT2 5 19 hexose transporter [GO:0015149] 0.000254088 HXT3 HXT1 HXT8 GAL2 HXT2 5 19 structural constituent of cell wall [GO:0005199] 0.000278515 TIP1 TIR1 HSP150 PIR3 4 11 monocarboxylic acid transporter [GO:0008028] 0.000278515 MCH1 DAL5 ESBP6 MCH5 4 11 organic anion transporter [GO:0008514] 0.000573823 MCH1 DAL5 ESBP6 MCH5 4 13 transporter [GO:0005215] 0.000701058 FUR4 FAT2 YCL073C MCH1 VCX1 HXT3 GNP1 HIP1 HXT1 OPT1 HXT8 DAL5 GAL2 SEC61 HXT2 NDE1 ZRC1 NAF1 ESBP6 MEP2 LYP1 MCH5 PXA1 AQY1 24 372 mannose transporter [GO:0015578] 0.0010418 HXT3 HXT1 HXT8 HXT2 4 15 carbohydrate transporter [GO:0015144] 0.0016999 HXT3 HXT1 HXT8 GAL2 HXT2 5 28 glucose transporter [GO:0005355] 0.00172766 HXT3 HXT1 HXT8 HXT2 4 17 trehalase [GO:0015927] 0.0029765 NTH2 ATH1 2 3 alpha,alpha-trehalase [GO:0004555] 0.0029765 NTH2 ATH1 2 3 anion transporter [GO:0008509] 0.00326287 MCH1 DAL5 ESBP6 MCH5 4 20 GO Biological Process Category p-value In Category from Cluster k f asparagine catabolism [GO:0006530] 1.00738e-06 ASP3-1 ASP3-2 ASP3-3 ASP3-4 4 4 aspartate family amino acid catabolism [GO:0009068] 1.63162e-06 AAT1 ASP3-1 ASP3-2 ASP3-3 ASP3-4 5 8 response to nitrogen starvation [GO:0006995] 4.91078e-06 ASP3-1 ASP3-2 ASP3-3 ASP3-4 4 5 asparagine metabolism [GO:0006528] 1.43638e-05 ASP3-1 ASP3-2 ASP3-3 ASP3-4 4 6 response to starvation [GO:0009267] 2.07784e-05 PHO4 ASP3-1 ASP3-2 ASP3-3 ASP3-4 5 12 glutamine family amino acid catabolism [GO:0009065] 0.000181761 ASP3-1 ASP3-2 ASP3-3 ASP3-4 4 10 response to stress [GO:0006950] 0.000187009 NTH2 YPD1 TIR1 HOR2 PHO4 SKN7 BCY1 UBI4 AHP1 ASP3-1 ASP3-2 ASP3-3 ASP3-4 HOR7 WHI2 POS5 ATH1 17 199 amine catabolism [GO:0009310] 0.000254088 AAT1 ASP3-1 ASP3-2 ASP3-3 ASP3-4 5 19 amino acid catabolism [GO:0009063] 0.000254088 AAT1 ASP3-1 ASP3-2 ASP3-3 ASP3-4 5 19 glutamine family amino acid metabolism [GO:0009064] 0.000624311 ASP3-1 ASP3-2 ASP3-3 ASP3-4 CIT1 IDH2 6 34 carbohydrate metabolism [GO:0005975] 0.0022495 NTH2 GAL7 HOR2 MIG1 PCL10 MIG2 GAL2 CIT1 PFK27 IDH2 FUM1 ATH1 TKL1 13 165 carbohydrate transport [GO:0008643] 0.00234057 HXT3 HXT1 HXT8 GAL2 HXT2 5 30 trehalose catabolism [GO:0005993] 0.0029765 NTH2 ATH1 2 3 monosaccharide transport [GO:0015749] 0.00468663 HXT3 HXT1 HXT8 HXT2 4 22 hexose transport [GO:0008645] 0.00468663 HXT3 HXT1 HXT8 HXT2 4 22 GO Cellular Component Category p-value In Category from Cluster k f external protective structure [GO:0030312] 5.85183e-06 FLO1 TIP1 TIR1 CRH1 HSP150 PIR3 SSA2 ASP3-1 ASP3-2 ASP3-3 ASP3-4 HOR7 SCW10 13 92 cell wall [GO:0005618] 5.85183e-06 FLO1 TIP1 TIR1 CRH1 HSP150 PIR3 SSA2 ASP3-1 ASP3-2 ASP3-3 ASP3-4 HOR7 SCW10 13 92 periplasmic space (sensu Fungi) [GO:0030287] 0.000111843 ASP3-1 ASP3-2 ASP3-3 ASP3-4 4 9 extracellular [GO:0005576] 0.00030825 FLO1 TIP1 ASP3-1 ASP3-2 ASP3-3 ASP3-4 HOR7 SCW10 MFA2 MF(ALPHA)1 10 84 nucleosome [GO:0005718] 0.000407383 HHF1 HHT1 HHF2 HHT2 4 12 plasma membrane [GO:0005886] 0.00156099 FUR4 PMP3 HXT3 GNP1 MTL1 HIP1 HXT1 HXT8 DAL5 GAL2 CDC42 HXT2 MEP2 LYP1 14 178 cell wall (sensu Fungi) [GO:0009277] 0.00212059 FLO1 TIP1 ASP3-1 ASP3-2 ASP3-3 ASP3-4 HOR7 SCW10 8 73 SMART Domains Category p-value In Category from Cluster k f H4 0.00101352 HHF1 HHF2 2 2 H3 0.0029765 HHT1 HHT2 2 3 ZnF_C2H2 0.00483174 YER028C YER130C RPH1 MIG1 MIG2 ZMS1 6 50 PFam-A Domains Category p-value In Category from Cluster k f PF00125 (histone) 6.96698e-06 HHF1 HHT1 HHF2 HHT2 HTZ1 5 10 PF00710 (Asparaginase) 3.26781e-05 ASP3-1 ASP3-2 ASP3-3 ASP3-4 4 7 PF00107 (adh_zinc) 0.00042209 BDH1 ZTA1 YCR102C YLR460C YNL134C 5 21 PF00083 (sugar_tr) 0.00134561 HXT3 HXT1 HXT8 GAL2 HXT2 AQR1 MCH5 7 53 PF00096 (zf-C2H2) 0.00196986 YER028C YER130C RPH1 MIG1 MIG2 ZMS1 6 42 PF00399 (yeast_PIR) 0.00233288 TIR1 HSP150 PIR3 3 9 PF00660 (SRP1_TIP1) 0.00234057 TIP1 TIR1 YIL176C YIR041W PAU1 5 30 Yeast Two Hybrid - Uetz Category p-value In Category from Cluster k f Yeast Two Hybrid - Ito (core) Category p-value In Category from Cluster k f Yeast Two Hybrid - Ito (full) Category p-value In Category from Cluster k f YOL020W (TAT2) 0.00101352 YEL017W PHO23 2 2 Synthetic Genetic Array Analysis Category p-value In Category from Cluster k f MDS Proteomics Complexes Category p-value In Category from Cluster k f YMR022W (QRI8) 0.000305393 BCY1 UBI4 AHP1 3 5 YPR165W (RHO1) 0.00159254 DLD3 ILV3 FUM1 3 8 YLR340W (RPP0) 0.00325479 HHF1 AHP1 TIF6 3 10 Cellzome Complexes Category p-value In Category from Cluster k f Proteome Localization--Observed Category p-value In Category from Cluster k f Proteome Localization--Predicted+Observed Category p-value In Category from Cluster k f Deletions Consortium (Essentiality, Morphology) Category p-value In Category from Cluster k f Yeast Fitness Data Category p-value In Category from Cluster k f Published Complexes Category p-value In Category from Cluster k f