Cep3-primary_8mers_11111111_lteq600sum0.35thrbgdsub.txt_200 Significant Conditions: condindex ind/rep TFexpr area activator/repressor 4. Cell Cycle: Expression in response to Clb2p (set 2, 30 min)(1) 5 induced -0.06 0.0996882 -0.005981292 -0.00130607164457831 5. Expression during the cell cycle (alpha factor arrest and release)(2) 7 induced 0 0.108950709 0 5. Expression during the cell cycle (alpha factor arrest and release)(16) 21 repressed -0.1 0.098917569 0.009891757 6. Expression during the cell cycle (cdc15 arrest and release)(2) 25 repressed 0.12 0.124143017 -0.014897162 6. Expression during the cell cycle (cdc15 arrest and release)(3) 26 repressed 0.29 0.101135176 -0.029329201 7. Expression during the cell Cycle (cdc28)(9) 56 induced 0.27 0.099619586 0.026897288 7. Expression during the cell Cycle (cdc28)(10) 57 induced 0.03 0.09918596 0.002975579 7. Expression during the cell Cycle (cdc28)(13) 60 repressed 0.21 0.100972274 -0.021204178 8. Expression during the cell cycle (cell size selection and release)(4) 68 repressed 0.16 0.111202857 -0.017792457 8. Expression during the cell cycle (cell size selection and release)(12) 76 induced 0.09 0.108392924 0.009755363 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(6) 94 induced 0.014 0.09632655 0.001348572 12. Expression in tup1-deleted cells(1) 96 induced -0.916 0.13242065 -0.121297315 14. Galactose-induced expression in med2-deleted cells(1) 98 repressed 0.074 0.104838966 -0.007758083 23. Fink: Expression in diploid tec1/tec1 deletion mutant(1) 107 repressed 0 0.103252427 0 27. Young: Expression in rpb1 mutant(1) 111 repressed 0 0.100449963 0 31. Young: Expression in srb10 mutant(1) 115 induced 0 0.09992205 0 32. Young: Expression in swi2 mutant(1) 116 bimodal 0 0.114624253 0 33. Young: Expression in taf145 mutant(1) 117 induced 0 0.141525392 0 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(3) 124 induced 0 0.107845407 0 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(6) 127 induced 0 0.102491598 0 43. Young: Expression in fcp1 deletion mutant(1) 133 repressed 0 0.096768111 0 55. Expression in response to overproduction of Ste11p(1) 160 repressed -0.114 0.101960418 0.011623488 56. Expression in response to overproduction of Ste12p(1) 161 repressed 0.166 0.110767364 -0.018387382 60. Expression in response to alpha-factor in ste20 deletion mutant cells(1) 165 repressed -0.02 0.119947722 0.002398954 65. Expression in ste4 deletion mutant cells(1) 170 induced -0.031 0.098912901 -0.0030663 66. Expression in ste5 deletion mutant cells(1) 171 induced -0.117 0.099179425 -0.011603993 68. Expression in ste11 deletion mutant cells(1) 173 induced -0.016 0.09657907 -0.001545265 74. Expression in response to overproduction of activated Rho1p(1) 179 induced -0.228 0.097307226 -0.022186047 75. Expression in fus3 deletion mutant cells treated with alpha-factor compared to wild-type cells treated with alpha-factor(1) 180 repressed -0.064 0.120940534 0.007740194 81. Expression in fus3 tec1 double deletion mutant cells treated with alpha-factor compared to wild-type untreated cells(1) 187 repressed 0.047 0.096508588 -0.004535904 82. Expression in response to alpha-factor in fus3 deletion mutant cells(1) 188 repressed 0.081 0.112753454 -0.00913303 83. Expression in response to alpha-factor in fus3 tec1 double deletion mutant cells(1) 189 repressed 0.007 0.10370239 -0.000725917 84. Expression in rst1 rst2 tec1 triple deletion mutant cells(1) 190 induced 0.029 0.115788368 0.003357863 96. Heat-shock induced expression in med2 deleted cells(1) 202 repressed 0.286 0.10360857 -0.029632051 101. Young: Expression in spt3 deletion mutant(1) 207 repressed 0 0.101696695 0 102. Young: Expression in taf25_2 deletion mutant(1) 208 induced 0 0.103257095 0 103. Young: Expression in taf60 deletion mutant(1) 209 induced 0 0.111687827 0 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(2) 214 induced 0 0.100234783 0 112. Rosetta 2000: Expression in afg3 (haploid) deletion mutant (1) 231 induced -0.123 0.117361837 -0.014435506 114. Rosetta 2000: Expression in anp1 deletion mutant (1) 233 induced -0.229 0.102069642 -0.023373948 135. Rosetta 2000: Expression in ckb2 deletion mutant (1) 254 repressed -0.007 0.102937827 0.000720565 143. Rosetta 2000: Expression in cup5 deletion mutant (1) 262 induced -0.086 0.114782954 -0.009871334 151. Rosetta 2000: Expression in dot4 deletion mutant (1) 270 repressed -0.163 0.104887509 0.017096664 169. Rosetta 2000: Expression in fks1 (haploid) deletion mutant (1) 288 induced -0.149 0.116552465 -0.017366317 176. Rosetta 2000: Expression in gas1 deletion mutant (1) 295 induced 0.306 0.104930919 0.032108861 186. Rosetta 2000: Expression in hir2 deletion mutant (1) 305 induced -0.06 0.098214619 -0.005892877 188. Rosetta 2000: Expression in hmg1(haploid) deletion mutant (1) 307 induced 0.096 0.114183626 0.010961628 191. Rosetta 2000: Expression in hpt1 deletion mutant (1) 310 induced 0.02 0.099713406 0.001994268 201. Rosetta 2000: Expression in kre1 deletion mutant (1) 320 induced -0.242 0.104737211 -0.025346405 205. Rosetta 2000: Expression in mak10 deletion mutant (1) 324 induced -0.036 0.103616972 -0.003730211 207. Rosetta 2000: Expression in med2 (haploid) deletion mutant (1) 326 repressed -0.106 0.107198002 0.011362988 253. Rosetta 2000: Expression in rts1 deletion mutant (1) 372 induced 0.146 0.10565674 0.015425884 259. Rosetta 2000: Expression in sbp1 deletion mutant (1) 378 induced 0.13 0.119161688 0.015491019 260. Rosetta 2000: Expression in scs7 deletion mutant (1) 379 induced -0.166 0.109344193 -0.018151136 266. Rosetta 2000: Expression in sir2 deletion mutant (1) 385 induced -0.063 0.097184466 -0.006122621 270. Rosetta 2000: Expression in spf1 deletion mutant (1) 389 induced -0.126 0.09737584 -0.012269356 271. Rosetta 2000: Expression in ssn6 (haploid) deletion mutant (1) 390 induced -0.638 0.099671863 -0.063590649 274. Rosetta 2000: Expression in ste11 (haploid) deletion mutant (1) 393 induced -0.053 0.09657907 -0.005118691 280. Rosetta 2000: Expression in ste4 (haploid) deletion mutant (1) 399 induced -0.103 0.098912901 -0.010188029 281. Rosetta 2000: Expression in ste5 (haploid) deletion mutant (1) 400 induced -0.389 0.099179425 -0.038580796 285. Rosetta 2000: Expression in swi6 (haploid) deletion mutant (1) 404 induced -0.189 0.101602875 -0.019202943 289. Rosetta 2000: Expression in top3 (haploid) deletion mutant (1) 408 induced 0.017 0.115522778 0.001963887 290. Rosetta 2000: Expression in tup1 (haploid) deletion mutant (1) 409 induced 0.352 0.157208271 0.055337311 291. Rosetta 2000: Expression in ubp8 deletion mutant (1) 410 induced 0.01 0.105745426 0.001057454 295. Rosetta 2000: Expression in vac8 deletion mutant (1) 414 induced -0.076 0.099971994 -0.007597872 296. Rosetta 2000: Expression in vma8 deletion mutant (1) 415 induced 0.153 0.110140497 0.016851496 320. Rosetta 2000: Expression in yer030w deletion mutant (1) 439 repressed 0.11 0.097683439 -0.010745178 382. Rosetta 2000: Expression in yor080w (**3) deletion mutant (1) 501 induced -0.279 0.134284914 -0.037465491 386. Rosetta 2000: Expression in cells with CDC42 under tet promoter(1) 505 induced -0.126 0.103969847 -0.013100201 387. Rosetta 2000: Expression in cells with ERG11 under tet promoter(1) 506 induced 0.608 0.109672797 0.06668106 388. Rosetta 2000: Expression in cells with FKS1 under tet promoter(1) 507 induced -0.183 0.103284167 -0.018901003 389. Rosetta 2000: Expression in cells with HMG2 under tet promoter(1) 508 induced -0.156 0.148528753 -0.023170485 398. Rosetta 2000: Expression in response to Doxycycline(1) 517 induced -0.206 0.105342606 -0.021700577 402. Rosetta 2000: Expression in response to Itraconazole(1) 521 induced 0.003 0.104329724 0.000312989 403. Rosetta 2000: Expression in response to Lovastatin(1) 522 induced 0.017 0.10252894 0.001742992 406. Rosetta 2000: Expression in response to Terbinafine(1) 525 induced 0.113 0.114937453 0.012987932 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(1) 527 induced -0.39 0.10139143 -0.039542658 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(11) 537 repressed 0.32 0.111464712 -0.035668708 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(1) 540 induced 0.32 0.099952857 0.031984914 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(3) 542 repressed -0.15 0.102805732 0.01542086 Low-Pi vs High-Pi in WT (DBY7286)(1) 579 induced 0.536 0.097665702 0.052348816 PHO81c vs WT exp1(1) 583 induced -0.12 0.101869399 -0.012224328 PHO81c vs WT exp2(1) 584 induced -0.667 0.108910101 -0.072643037 430. Expression in strain PM38 (wild type), glucose versus ethanol: strain was shifted from medium containing dextrose as carbon source, ammonium sulfate as nirogen source, supplemented with leucine and uracil to same medium for 30 min, compared to a shift to a medium with synthetic ethanol instead of glucose for 30 min(1) 587 induced -0.246 0.110906927 -0.027283104 431. Expression in strain PM71 (gln3 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 588 induced 0.112 0.116425037 0.013039604 434. Expression in strain P40-1A (gln3 ure2 double deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 591 induced -0.495 0.11038835 -0.054642233 436. Expression in wild type versus strain MS221 under steady state conditions in YPD(1) 593 repressed -0.065 0.104631721 0.006801062 441. Expression in wild type versus strain TS19-4c under steady state conditions in YPD(1) 598 induced -1.353 0.126429705 -0.171059391 443. Expression in strain YHE710 (mks1 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 600 induced -0.355 0.105272125 -0.037371604 446. Expression in response to 0.1% MMS for 10 min(1) 603 repressed 0 0.09717093 0 454. Expression in response to tBuOOH (5mM) for 60 min(1) 611 induced 0 0.101368092 0 458. Expression of S arrested cells (with hydroxyurea) in response to 0.1% MMS for 60 min(1) 615 repressed 0 0.097939694 0 469. Expression in hda1 deletion(1) 626 induced 0.452 0.102890683 0.046506589 470. Expression in hda1 deletion(1) 627 induced 0.168 0.100473768 0.016879593 479. Expression in diploid cells in response to rapamycin (100nM) for: 15min,30min,90min,120min(2) 644 induced -1.048 0.121583738 -0.127419757 485. Expression in response to peroxide: 10,20,40,60,120 min(2) 672 induced 0 0.105629201 0 488. Brown enviromental changes :Heat Shock 05 minutes hs-1(1) 686 induced -0.29 0.113008308 -0.032772409 490. Brown enviromental changes :Heat Shock 15 minutes hs-1(1) 688 induced 0.16 0.113354182 0.018136669 492. Brown enviromental changes :Heat Shock 30 minutes hs-1(1) 690 induced 0.29 0.106426904 0.030863802 496. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 694 repressed -0.32 0.097827203 0.031304705 498. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 696 repressed -0.17 0.105969007 0.018014731 509. Brown enviromental changes :heat shock 21 to 37, 20 minutes(1) 707 induced 0.34 0.100119959 0.034040786 511. Brown enviromental changes :heat shock 29 to 37, 20 minutes(1) 709 induced 0.11 0.100992812 0.011109209 539. Brown enviromental changes :1 mM Menadione (105 min) redo(1) 737 induced 0.19 0.101667756 0.019316874 557. Brown enviromental changes :1.5 mM diamide (5 min)(1) 755 induced 0.18 0.126335418 0.022740375 558. Brown enviromental changes :1.5 mM diamide (10 min)(1) 756 induced -0.25 0.128293503 -0.032073376 559. Brown enviromental changes :1.5 mM diamide (20 min)(1) 757 induced -0.1 0.124122479 -0.012412248 560. Brown enviromental changes :1.5 mM diamide (30 min)(1) 758 induced -0.14 0.100966673 -0.014135334 566. Brown enviromental changes :1M sorbitol - 15 min(1) 764 induced 0.04 0.100772498 0.0040309 568. Brown enviromental changes :1M sorbitol - 45 min (1) 766 induced 0.04 0.097640963 0.003905639 575. Brown enviromental changes :Hypo-osmotic shock - 45 min(1) 773 repressed -0.12 0.097479462 0.011697535 578. Brown enviromental changes :aa starv 0.5 h(1) 776 induced 0.03 0.099166355 0.002974991 585. Brown enviromental changes :Nitrogen Depletion 2 h(1) 783 repressed 0.08 0.106289208 -0.008503137 586. Brown enviromental changes :Nitrogen Depletion 4 h(1) 784 repressed 0 0.118230489 0 604. Brown enviromental changes :YPD 8 h ypd-2(1) 795 induced 0.38 0.111072162 0.042207422 605. Brown enviromental changes :YPD 10 h ypd-2(1) 796 induced 0.6 0.118281367 0.07096882 606. Brown enviromental changes :YPD 12 h ypd-2(1) 797 induced 0.31 0.109412808 0.033917971 607. Brown enviromental changes :YPD 1 d ypd-2(1) 798 induced 0.53 0.109910848 0.058252749 608. Brown enviromental changes :YPD 2 d ypd-2(1) 799 induced 0.51 0.105194175 0.053649029 609. Brown enviromental changes :YPD 3 d ypd-2(1) 800 induced 0.95 0.105280993 0.100016944 610. Brown enviromental changes :YPD 5 d ypd-2(1) 801 induced 0.41 0.104810493 0.042972302 614. Brown enviromental changes :YPD stationary phase 12 h ypd-1(1) 805 induced 1.01 0.107412248 0.10848637 615. Brown enviromental changes :YPD stationary phase 1 d ypd-1(1) 806 induced 0.58 0.146186053 0.084787911 616. Brown enviromental changes :YPD stationary phase 2 d ypd-1(1) 807 induced 0.53 0.102800131 0.054484069 617. Brown enviromental changes :YPD stationary phase 3 d ypd-1(1) 808 induced 0.6 0.118152539 0.070891524 618. Brown enviromental changes :YPD stationary phase 5 d ypd-1(1) 809 induced 0.12 0.114354462 0.013722535 619. Brown enviromental changes :YPD stationary phase 7 d ypd-1(1) 810 induced -0.07 0.111227128 -0.007785899 620. Brown enviromental changes :YPD stationary phase 13 d ypd-1(1) 811 induced -0.4 0.119797423 -0.047918969 621. Brown enviromental changes :YPD stationary phase 22 d ypd-1(1) 812 induced 0.44 0.12034354 0.052951158 623. Brown enviromental changes :DBY7286 37degree heat - 20 min(1) 814 induced 0.28 0.095806105 0.026825709 626. Brown enviromental changes :DBYyap1- 37degree heat - 20 min (redo)(1) 817 induced 0.15 0.099127147 0.014869072 636. Brown enviromental changes :ethanol car-1(1) 827 induced 0.26 0.109332991 0.028426578 642. Brown enviromental changes :YP ethanol vs reference pool car-2(1) 833 induced 0.06 0.112320762 0.006739246 645. Brown enviromental changes :YP glucose vs reference pool car-2(1) 836 repressed 0.04 0.100119959 -0.004004798 678. Expression in gcr1 mutant YPGL+glucose versus gcr1 mutant YPGL(1) 866 bimodal 0.014 0.110945668 0.001553239 679. Expression in GCR1 YPGL+glucose versus GCR1 YPGL(1) 867 repressed -0.239 0.106139376 0.025367311 ( trp- 2% Glucose-203686) fus3 (+Vector) 5mM aF, 30 min. 896 repressed 0.24 0.111650485 -0.026796117 Addition of 1M NaCl (90) 917 induced 0.23 0.118803211 0.027324739 Addition of .5M NaCl in gpd1gpd2 deletion mutant (60) 918 induced -2.281 0.105702483 -0.241107364 DES459 (mec1-) + 0.02% MMS - 60 min 930 repressed -0.018 0.114524365 0.002061439 DES459 (mec1-) + 0.02% MMS - 90 min 931 repressed -0.225 0.125489171 0.028235063 dun1- + 0.02% MMS - 120 min 935 repressed -0.22 0.097400579 0.021428127 mec1_plus_gamma_5_min 948 induced 0.143 0.099227035 0.014189466 mec1_plus_gamma_30_min 951 repressed 0.349 0.119389937 -0.041667088 mec1_plus_gamma_45_min 952 repressed 0.174 0.108577763 -0.018892531 mec1_plus_gamma_60_min 953 repressed 0.117 0.128213219 -0.015000947 gal3+gal 977 bimodal 0.395 0.108774739 0.042966022 gal7-gal 990 repressed -0.053 0.100825243 0.005343738 gal1gal10+gal 993 induced 1.724 0.117728715 0.202964305 gal4gal80-gal 995 repressed 0.518 0.096681292 -0.050080909 sfp1::GALSFP1 t=10min GAL vs. t=0 RAFF (YT00270) 1001 induced -0.01 0.112647031 -0.00112647 YAL038W 1010 induced -0.2593 0.101618279 -0.02634962 YBL020W 1013 induced 0.23698 0.099980863 0.023693465 YBR088C 1018 induced -0.24265 0.10568568 -0.02564463 YDL132W 1037 induced -0.111 0.103269698 -0.011462936 YDR047W 1039 induced -0.28179 0.123902633 -0.034914523 YDR489W 1047 induced -0.090905 0.121992158 -0.011089697 YFL024C 1052 induced -0.19967 0.09887276 -0.019741924 YGR175C 1062 induced 0.053059 0.109111744 0.00578936 YIR022W 1076 induced -0.070926 0.099214432 -0.007036883 YJL081C 1082 induced -0.025043 0.099939787 -0.002502792 YKR079C 1094 induced 0.089166 0.100474701 0.008958927 YLR076C 1101 induced -0.059055 0.106333084 -0.0062795 YLR086W 1102 induced -0.26789 0.102675504 -0.027505741 YLR459W 1117 induced -0.035553 0.099389003 -0.003533577 YMR043W 1122 induced -0.18364 0.095583925 -0.017553032 YMR079W 1124 induced -0.10381 0.099620519 -0.010341606 YMR239C 1128 induced -0.13294 0.106160381 -0.014112961 YNL158W 1133 induced 0.060963 0.119980396 0.007314365 YNL272C 1136 induced -0.051406 0.100554985 -0.00516913 YNR043W 1139 induced -0.12468 0.096121639 -0.011984446 YPL063W 1167 induced -0.0545 0.12820435 -0.006987137 YPL076W 1168 induced 0.018567 0.118614171 0.002202309 YPL228W 1172 induced 0.039837 0.126320482 0.005032229 YGL073W 1191 induced 0.053892 0.099375467 0.005355543 YGR198W 1196 induced -0.013251 0.100112491 -0.001326591 YJL097W 1202 induced -0.35238 0.11543596 -0.040677323 ECM22OE+ 1230 induced 0.002287 0.116585138 0.00026663 GAT4OE+ 1232 induced NaN 0.132078043 0 HAC1OE+ 1237 repressed 0.0606995 0.113818148 -0.006908705 RFX1OE+ 1253 induced -0.0165465 0.118956777 -0.001968318 ROX1OE+ 1256 induced 0.444263 0.099903379 0.044383375 SUT1OE+ 1267 repressed NaN 0.113868559 0 SWI4OE+ 1268 induced -0.0612855 0.105043409 -0.006437638 UPC2OE+ 1270 induced -0.2167295 0.123059653 -0.026670657 YOX1OE+ 1274 induced -1.024596 0.098850355 -0.101281678