Cha4-primary_8mers_1.1111111_lteq600sum0.35thrbgdsub.txt_200 Significant Conditions: condindex ind/rep TFexpr area activator/repressor 2. Cell Cycle: Expression in response to Cln3p (set 2)(1) 3 induced -0.15 0.1059382 -0.01589073 -0.000774636926873857 4. Cell Cycle: Expression in response to Clb2p (set 2, 30 min)(1) 5 induced -0.18 0.109846901 -0.019772442 5. Expression during the cell cycle (alpha factor arrest and release)(2) 7 induced -0.36 0.118494679 -0.042658084 5. Expression during the cell cycle (alpha factor arrest and release)(3) 8 induced -0.6 0.143652446 -0.086191468 5. Expression during the cell cycle (alpha factor arrest and release)(4) 9 induced -0.5 0.110377147 -0.055188574 5. Expression during the cell cycle (alpha factor arrest and release)(13) 18 repressed -0.17 0.105025205 0.017854285 5. Expression during the cell cycle (alpha factor arrest and release)(16) 21 repressed 0.14 0.114657394 -0.016052035 6. Expression during the cell cycle (cdc15 arrest and release)(1) 24 repressed 0.03 0.109206497 -0.003276195 6. Expression during the cell cycle (cdc15 arrest and release)(2) 25 repressed -0.03 0.129986931 0.003899608 6. Expression during the cell cycle (cdc15 arrest and release)(3) 26 repressed 0.24 0.101054425 -0.024253062 6. Expression during the cell cycle (cdc15 arrest and release)(5) 28 induced 0.12 0.102908887 0.012349066 7. Expression during the cell Cycle (cdc28)(2) 49 repressed 0.3 0.113685586 -0.034105676 7. Expression during the cell Cycle (cdc28)(6) 53 repressed 0.04 0.099731609 -0.003989264 7. Expression during the cell Cycle (cdc28)(10) 57 induced -0.37 0.145820108 -0.05395344 7. Expression during the cell Cycle (cdc28)(16) 63 induced 0.06 0.109386202 0.006563172 8. Expression during the cell cycle (cell size selection and release)(2) 66 induced -0.35 0.119023992 -0.041658397 8. Expression during the cell cycle (cell size selection and release)(5) 69 repressed -0.19 0.106471714 0.020229626 8. Expression during the cell cycle (cell size selection and release)(6) 70 repressed -0.13 0.130329537 0.01694284 8. Expression during the cell cycle (cell size selection and release)(7) 71 repressed -0.19 0.098961445 0.018802675 8. Expression during the cell cycle (cell size selection and release)(9) 73 induced 0.26 0.105229649 0.027359709 8. Expression during the cell cycle (cell size selection and release)(12) 76 induced 0.13 0.132507001 0.01722591 8. Expression during the cell cycle (cell size selection and release)(13) 77 induced 0.09 0.1139073 0.010251657 8. Expression during the cell cycle (cell size selection and release)(14) 78 induced 0.29 0.109803025 0.031842877 9. Sporulation: time course: t0,t0.5,t2,t5,t7,t9,t11.5(2) 80 induced -0.124 0.135881721 -0.016849333 9. Sporulation: time course: t0,t0.5,t2,t5,t7,t9,t11.5(4) 82 repressed -0.401 0.102924757 0.041272828 10. Sporulation: Ectopic expression of Ndt80; deletion of Ndt80: early, mid,(3) 88 repressed -0.057 0.13065534 0.007447354 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(4) 92 induced -0.029 0.119533701 -0.003466477 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(5) 93 induced -0.322 0.14010969 -0.04511532 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(6) 94 induced -1.184 0.127497666 -0.150957237 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(7) 95 induced -0.713 0.151595407 -0.108087525 12. Expression in tup1-deleted cells(1) 96 induced -0.136 0.172676438 -0.023483996 14. Galactose-induced expression in med2-deleted cells(1) 98 repressed 0 0.100539115 0 15. evolved strain 1 versus evolved strain 1(1) 99 repressed -0.45 0.108007375 0.048603319 16. parental strain versus evolved strain 1(1) 100 repressed -0.4 0.102556479 0.041022591 17. parental strain versus evolved strain 2(1) 101 induced -0.06 0.105933999 -0.00635604 18. parental strain versus evolved strain 3(1) 102 bimodal -0.04 0.1573455 -0.00629382 23. Fink: Expression in diploid tec1/tec1 deletion mutant(1) 107 repressed 0 0.127237677 0 24. Fink: Expression in diploid ste12/ste12 deletion mutant(1) 108 bimodal 0 0.105935866 0 25. Fink: Expression in diploid ste7/ste7 deletion mutant(1) 109 repressed 0 0.110440161 0 26. Fink: Expression in diploid high copy TEC1(1) 110 repressed 0 0.116422237 0 27. Young: Expression in rpb1 mutant(1) 111 repressed 0 0.128367718 0 28. Young: Expression in srb4 mutant(1) 112 repressed 0 0.124942588 0 30. Young: Expression in med6 mutant(1) 114 repressed 0 0.139394604 0 31. Young: Expression in srb10 mutant(1) 115 induced 0 0.160781833 0 32. Young: Expression in swi2 mutant(1) 116 bimodal 0 0.1064073 0 33. Young: Expression in taf145 mutant(1) 117 induced 0 0.162278286 0 34. Young: Expression in taf17 mutant(1) 118 bimodal 0 0.125761763 0 35. Young: Expression in tfa1 mutant(1) 119 repressed 0 0.115884522 0 36. Young: Expression in kin28 mutant(1) 120 repressed 0 0.12729509 0 37. Young: Expression in gcn5 mutant(1) 121 induced 0 0.129487491 0 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(3) 124 induced 0 0.098805545 0 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(4) 125 induced 0 0.110486837 0 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(7) 128 repressed 0 0.101027353 0 39. Young: Expression in sir2 deletion mutant(1) 129 induced 0 0.105027072 0 40. Young: Expression in sir3 deletion mutant(1) 130 repressed 0 0.099750747 0 43. Young: Expression in fcp1 deletion mutant(1) 133 repressed 0 0.154262043 0 45. Expression in snf2 mutant cells in minimal medium(1) 135 bimodal 0.428 0.146014283 0.062494113 46. Expression in swi1 mutant cells in YPD(1) 136 induced 0.141 0.110748693 0.015615566 47. Expression in swi1 mutant cells in minimal medium(1) 137 bimodal 0.281 0.123666449 0.034750272 49. Expression in response to 50 nM alpha-factor: 0,15,30,45,60,90,120 min(4) 149 repressed -0.129 0.101161781 0.01304987 49. Expression in response to 50 nM alpha-factor: 0,15,30,45,60,90,120 min(7) 152 induced -0.116 0.099965459 -0.011595993 51. Expression in response to 50 nM alpha-factor in kss1 deletion mutant 30 min(1) 156 repressed -0.046 0.096701363 0.004448263 54. Expression in response to overproduction of Ste5p(1) 159 repressed -0.05 0.109974795 0.00549874 55. Expression in response to overproduction of Ste11p(1) 160 repressed -0.032 0.125119492 0.004003824 56. Expression in response to overproduction of Ste12p(1) 161 repressed -0.229 0.134925317 0.030897898 58. Expression in rst1 rst2 double deletion mutant cells(1) 163 repressed -0.029 0.119835698 0.003475235 59. Expression in sst2 deletion mutant cells(1) 164 induced -0.108 0.117576083 -0.012698217 60. Expression in response to alpha-factor in ste20 deletion mutant cells(1) 165 repressed -0.024 0.145604462 0.003494507 62. Expression in response to osmotic shock in hog1 deletion mutant cells(1) 167 repressed 0.095 0.102307692 -0.009719231 66. Expression in ste5 deletion mutant cells(1) 171 induced -0.069 0.114921117 -0.007929557 67. Expression in ste7 deletion mutant cells(1) 172 repressed -0.022 0.097507468 0.002145164 68. Expression in ste11 deletion mutant cells(1) 173 induced -0.018 0.098465739 -0.001772383 71. Expression in bni1 deletion mutant cells(1) 176 induced -0.05 0.100290795 -0.00501454 73. Expression in response to overproduction of activated Pkc1p(1) 178 repressed 0.185 0.131980956 -0.024416477 75. Expression in fus3 deletion mutant cells treated with alpha-factor compared to wild-type cells treated with alpha-factor(1) 180 repressed -0.003 0.098269698 0.000294809 76. Expression in tec1 deletion mutant cells treated with alpha-factor compared to wild-type cells treated with alpha-factor: 30,120 min(2) 182 repressed 0.059 0.105225915 -0.006208329 77. Expression in tec1 deletion mutant cells(1) 183 induced -0.018 0.107907954 -0.001942343 79. Expression in fus3 deletion mutant cells(1) 185 induced -0.01 0.102836072 -0.001028361 80. Expression in fus3 tec1 double deletion mutant cells(1) 186 repressed -0.004 0.114911781 0.000459647 81. Expression in fus3 tec1 double deletion mutant cells treated with alpha-factor compared to wild-type untreated cells(1) 187 repressed -0.021 0.144364264 0.00303165 82. Expression in response to alpha-factor in fus3 deletion mutant cells(1) 188 repressed -0.032 0.129709671 0.004150709 83. Expression in response to alpha-factor in fus3 tec1 double deletion mutant cells(1) 189 repressed 0.05 0.109166355 -0.005458318 84. Expression in rst1 rst2 tec1 triple deletion mutant cells(1) 190 induced -0.046 0.155527913 -0.007154284 88. Expression in response to DNA damage by MMS(1) 194 repressed 0 0.100210045 0 94. Expression in response to 1ug/mL FK506(1) 200 induced 0 0.103219287 0 95. Expression in response to 50ug/mL FK506(1) 201 induced 0 0.11998553 0 96. Heat-shock induced expression in med2 deleted cells(1) 202 repressed 0.136 0.109299851 -0.01486478 97. Church: mating type a GLUCOSE 30 C vs. mating type a GALACTOSE 30 C(1) 203 repressed 0 0.113463872 0 98. Church: mating type A glucose 30 C vs. mating type ALPHA glactose 30 C(1) 204 bimodal 0 0.102182132 0 99. Church: mating type a glucose 30 C vs. mating type a glactose 30 C FOLLOWED BY 30 C HEAT SHOCK(1) 205 induced 0 0.120892457 0 100. Young: Expression in spt20 deletion mutant(1) 206 repressed 0 0.129297517 0 101. Young: Expression in spt3 deletion mutant(1) 207 repressed 0 0.118808813 0 102. Young: Expression in taf25_2 deletion mutant(1) 208 bimodal 0 0.134227969 0 103. Young: Expression in taf60 deletion mutant(1) 209 induced 0 0.141086632 0 104. Young: Expression in taf61 deletion mutant(1) 210 induced 0 0.128855022 0 105. Young: Expression in taf90 deletion mutant(1) 211 induced 0 0.1129691 0 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(1) 213 induced -0.09 0.098498413 -0.008864857 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(2) 214 induced -0.42 0.154821229 -0.065024916 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(3) 215 induced -1.03 0.123238424 -0.126935577 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(5) 217 induced 0.37 0.109068801 0.040355456 108. Rosetta 2000: Expression in ade1 deletion mutant (1) 227 repressed -0.003 0.11924944 0.000357748 111. Rosetta 2000: Expression in aep2 deletion mutant (1) 230 induced 0.007 0.140361744 0.000982532 112. Rosetta 2000: Expression in afg3 (haploid) deletion mutant (1) 231 induced -0.03 0.150181572 -0.004505447 114. Rosetta 2000: Expression in anp1 deletion mutant (1) 233 induced -0.242 0.120433626 -0.029144937 117. Rosetta 2000: Expression in ard1 deletion mutant (1) 236 repressed 0.043 0.101530993 -0.004365833 121. Rosetta 2000: Expression in ase1 (**12) deletion mutant (1) 240 repressed 0.292 0.114631721 -0.033472463 123. Rosetta 2000: Expression in bim1 (**15) deletion mutant (1) 242 induced -0.149 0.130326736 -0.019418684 124. Rosetta 2000: Expression in bni1 (haploid) deletion mutant (1) 243 induced -0.01 0.095151232 -0.000951512 127. Rosetta 2000: Expression in bub3 (**2,8,13) deletion mutant (1) 246 induced -0.083 0.099714806 -0.008276329 129. Rosetta 2000: Expression in bul1 deletion mutant (1) 248 induced -0.103 0.097091113 -0.010000385 130. Rosetta 2000: Expression in cat8 deletion mutant (1) 249 induced -0.03 0.112317494 -0.003369525 131. Rosetta 2000: Expression in cbp2 deletion mutant (1) 250 induced -0.086 0.100702483 -0.008660414 132. Rosetta 2000: Expression in cem1 deletion mutant (1) 251 induced 0.166 0.138059186 0.022917825 134. Rosetta 2000: Expression in cka2 deletion mutant (1) 253 induced 0.146 0.119279313 0.01741478 135. Rosetta 2000: Expression in ckb2 deletion mutant (1) 254 bimodal 0 0.150203977 0 137. Rosetta 2000: Expression in clb2 deletion mutant (1) 256 induced -0.106 0.096808719 -0.010261724 139. Rosetta 2000: Expression in cmk2 deletion mutant (1) 258 induced 0.03 0.095559186 0.002866776 142. Rosetta 2000: Expression in cue1 deletion mutant (1) 261 induced -0.146 0.103977782 -0.015180756 143. Rosetta 2000: Expression in cup5 deletion mutant (1) 262 induced -0.09 0.11478342 -0.010330508 146. Rosetta 2000: Expression in dfr1 deletion mutant (1) 265 induced -0.017 0.097199403 -0.00165239 147. Rosetta 2000: Expression in dig1 deletion mutant (1) 266 repressed 0.007 0.09878314 -0.000691482 149. Rosetta 2000: Expression in dig1, dig2 (haploid) deletion mutant (1) 268 repressed -0.253 0.126447442 0.031991203 150. Rosetta 2000: Expression in dig2 deletion mutant (1) 269 induced -0.136 0.100629201 -0.013685571 151. Rosetta 2000: Expression in dot4 deletion mutant (1) 270 repressed -0.106 0.136934746 0.014515083 154. Rosetta 2000: Expression in ecm10 deletion mutant (1) 273 induced -0.033 0.115728622 -0.003819045 156. Rosetta 2000: Expression in ecm29 deletion mutant (1) 275 repressed 0.023 0.102015963 -0.002346367 158. Rosetta 2000: Expression in ecm34 deletion mutant (1) 277 induced 0.08 0.096721901 0.007737752 159. Rosetta 2000: Expression in eft2 deletion mutant (1) 278 repressed 0.113 0.137258215 -0.015510178 166. Rosetta 2000: Expression in erp2 deletion mutant (1) 285 repressed 0.093 0.124738611 -0.011600691 169. Rosetta 2000: Expression in fks1 (haploid) deletion mutant (1) 288 induced 0.073 0.123501214 0.009015589 170. Rosetta 2000: Expression in fpr1 deletion mutant (1) 289 induced 0.678 0.099867905 0.06771044 173. Rosetta 2000: Expression in fus3 (haploid) deletion mutant (1) 292 induced -0.033 0.102836072 -0.00339359 175. Rosetta 2000: Expression in gal83 deletion mutant (1) 294 repressed -0.149 0.111176718 0.016565331 176. Rosetta 2000: Expression in gas1 deletion mutant (1) 295 induced 0.236 0.098854556 0.023329675 180. Rosetta 2000: Expression in gpa2 deletion mutant (1) 299 induced 0.066 0.146697162 0.009682013 182. Rosetta 2000: Expression in hat2 deletion mutant (1) 301 induced -0.04 0.108883028 -0.004355321 183. Rosetta 2000: Expression in hda1 deletion mutant (1) 302 induced -0.106 0.122581684 -0.012993659 186. Rosetta 2000: Expression in hir2 deletion mutant (1) 305 induced -0.14 0.104208831 -0.014589236 187. Rosetta 2000: Expression in his1 deletion mutant (1) 306 induced -0.013 0.101709298 -0.001322221 188. Rosetta 2000: Expression in hmg1(haploid) deletion mutant (1) 307 bimodal -0.036 0.109184093 -0.003930627 191. Rosetta 2000: Expression in hpt1 deletion mutant (1) 310 induced -0.276 0.119426344 -0.032961671 194. Rosetta 2000: Expression in imp2 (**12) deletion mutant (1) 313 induced -0.116 0.107461258 -0.012465506 195. Rosetta 2000: Expression in isw1 deletion mutant (1) 314 induced -0.133 0.119648992 -0.015913316 196. Rosetta 2000: Expression in isw1, isw2 deletion mutant (1) 315 repressed 0.023 0.114420743 -0.002631677 197. Rosetta 2000: Expression in isw2 deletion mutant (1) 316 repressed -0.046 0.100717886 0.004633023 198. Rosetta 2000: Expression in jnm1 deletion mutant (1) 317 induced -0.036 0.107015963 -0.003852575 199. Rosetta 2000: Expression in kim4 deletion mutant (1) 318 induced 0.256 0.112928025 0.028909574 201. Rosetta 2000: Expression in kre1 deletion mutant (1) 320 induced -0.036 0.12331404 -0.004439305 202. Rosetta 2000: Expression in kss1 (haploid) deletion mutant (1) 321 repressed -0.053 0.099972928 0.005298565 204. Rosetta 2000: Expression in mad2 deletion mutant (1) 323 induced 0.057 0.103056385 0.005874214 205. Rosetta 2000: Expression in mak10 deletion mutant (1) 324 induced -0.04 0.103080657 -0.004123226 207. Rosetta 2000: Expression in med2 (haploid) deletion mutant (1) 326 repressed 0.093 0.112746453 -0.01048542 209. Rosetta 2000: Expression in mrpl33 deletion mutant (1) 328 induced -0.073 0.098916636 -0.007220914 211. Rosetta 2000: Expression in msu1 deletion mutant (1) 330 induced -0.017 0.099542102 -0.001692216 212. Rosetta 2000: Expression in npr2 deletion mutant (1) 331 repressed -0.12 0.154567774 0.018548133 213. Rosetta 2000: Expression in nrf1 deletion mutant (1) 332 induced -0.03 0.118806479 -0.003564194 220. Rosetta 2000: Expression in pep12 deletion mutant (1) 339 bimodal 0.033 0.132420183 0.004369866 221. Rosetta 2000: Expression in pet111 deletion mutant (1) 340 induced -0.02 0.101642084 -0.002032842 223. Rosetta 2000: Expression in pet127 deletion mutant (1) 342 induced -0.01 0.106762976 -0.00106763 225. Rosetta 2000: Expression in pfd2 (**14) deletion mutant (1) 344 induced -0.06 0.12136109 -0.007281665 227. Rosetta 2000: Expression in ppr1 deletion mutant (1) 346 repressed -0.06 0.10387416 0.00623245 229. Rosetta 2000: Expression in qcr2 (haploid) deletion mutant (1) 348 induced -0.096 0.111690627 -0.0107223 231. Rosetta 2000: Expression in rad57 deletion mutant (1) 350 induced -0.066 0.10790562 -0.007121771 237. Rosetta 2000: Expression in rip1 deletion mutant (1) 356 bimodal -0.007 0.104199029 -0.000729393 238. Rosetta 2000: Expression in rml2 (**13) deletion mutant (1) 357 induced 0.007 0.099978996 0.000699853 241. Rosetta 2000: Expression in rpd3 (haploid) deletion mutant (1) 360 induced -0.176 0.103754668 -0.018260822 242. Rosetta 2000: Expression in rpl12a deletion mutant (1) 361 repressed 0.289 0.118925037 -0.034369336 244. Rosetta 2000: Expression in rpl27a (**4) deletion mutant (1) 363 repressed 0.13 0.11573609 -0.015045692 245. Rosetta 2000: Expression in rpl34a (**9) deletion mutant (1) 364 repressed 0.146 0.127760922 -0.018653095 250. Rosetta 2000: Expression in rps27b (**11) deletion mutant (1) 369 repressed -0.076 0.149396938 0.011354167 252. Rosetta 2000: Expression in rtg1 deletion mutant (1) 371 induced 0.043 0.152043503 0.006537871 253. Rosetta 2000: Expression in rts1 deletion mutant (1) 372 induced 0.083 0.157153193 0.013043715 254. Rosetta 2000: Expression in rvs161 (haploid) deletion mutant (1) 373 induced 0.219 0.11692401 0.025606358 257. Rosetta 2000: Expression in sap30 deletion mutant (1) 376 induced 0.02 0.101793783 0.002035876 259. Rosetta 2000: Expression in sbp1 deletion mutant (1) 378 induced 0.03 0.182942961 0.005488289 260. Rosetta 2000: Expression in scs7 deletion mutant (1) 379 induced -0.013 0.110623133 -0.001438101 263. Rosetta 2000: Expression in she4 deletion mutant (1) 382 induced 0.073 0.134563574 0.009823141 264. Rosetta 2000: Expression in sin3 deletion mutant (1) 383 induced -0.309 0.145095687 -0.044834567 265. Rosetta 2000: Expression in sir1 deletion mutant (1) 384 induced -0.083 0.102292289 -0.00849026 266. Rosetta 2000: Expression in sir2 deletion mutant (1) 385 induced -0.113 0.102357636 -0.011566413 267. Rosetta 2000: Expression in sir3 deletion mutant (1) 386 induced -0.083 0.102633495 -0.00851858 268. Rosetta 2000: Expression in sir4 deletion mutant (1) 387 repressed 0.02 0.123549291 -0.002470986 269. Rosetta 2000: Expression in sod1 (haploid) deletion mutant (1) 388 induced -0.143 0.109861837 -0.015710243 270. Rosetta 2000: Expression in spf1 deletion mutant (1) 389 induced -0.09 0.099705937 -0.008973534 271. Rosetta 2000: Expression in ssn6 (haploid) deletion mutant (1) 390 induced -0.449 0.132049571 -0.059290257 272. Rosetta 2000: Expression in sst2 (haploid) deletion mutant (1) 391 induced -0.359 0.117576083 -0.042209814 274. Rosetta 2000: Expression in ste11 (haploid) deletion mutant (1) 393 induced -0.06 0.098465739 -0.005907944 277. Rosetta 2000: Expression in ste2 (haploid) deletion mutant (1) 396 induced 0.04 0.100327203 0.004013088 279. Rosetta 2000: Expression in ste24 (haploid) deletion mutant (1) 398 induced -0.096 0.097886949 -0.009397147 281. Rosetta 2000: Expression in ste5 (haploid) deletion mutant (1) 400 induced -0.229 0.114921117 -0.026316936 283. Rosetta 2000: Expression in swi4 deletion mutant (1) 402 induced -0.239 0.1131236 -0.02703654 285. Rosetta 2000: Expression in swi6 (haploid) deletion mutant (1) 404 induced 0.046 0.152696975 0.007024061 286. Rosetta 2000: Expression in tec1 (haploid) deletion mutant (1) 405 induced -0.03 0.151753641 -0.004552609 289. Rosetta 2000: Expression in top3 (haploid) deletion mutant (1) 408 repressed -0.093 0.111561333 0.010375204 290. Rosetta 2000: Expression in tup1 (haploid) deletion mutant (1) 409 induced -0.9 0.197282954 -0.177554658 291. Rosetta 2000: Expression in ubp8 deletion mutant (1) 410 induced -0.063 0.109456217 -0.006895742 292. Rosetta 2000: Expression in ubr1 deletion mutant (1) 411 induced -0.017 0.102860344 -0.001748626 293. Rosetta 2000: Expression in ubr2 deletion mutant (1) 412 repressed -0.017 0.130530713 0.002219022 295. Rosetta 2000: Expression in vac8 deletion mutant (1) 414 induced 0.253 0.163375653 0.04133404 296. Rosetta 2000: Expression in vma8 deletion mutant (1) 415 induced -0.01 0.127413648 -0.001274136 298. Rosetta 2000: Expression in vps8 deletion mutant (1) 417 induced 0.046 0.097303025 0.004475939 302. Rosetta 2000: Expression in yap1 deletion mutant (1) 421 induced 0.226 0.110417756 0.024954413 305. Rosetta 2000: Expression in yar014c deletion mutant (1) 424 repressed -0.216 0.105630601 0.02281621 308. Rosetta 2000: Expression in yel001c deletion mutant (1) 427 repressed 0.086 0.104519231 -0.008988654 309. Rosetta 2000: Expression in yel008w deletion mutant (1) 428 repressed -0.013 0.102647498 0.001334417 310. Rosetta 2000: Expression in yel010w deletion mutant (1) 429 repressed 0.033 0.111217793 -0.003670187 312. Rosetta 2000: Expression in yel028w deletion mutant (1) 431 repressed 0.146 0.097147125 -0.01418348 313. Rosetta 2000: Expression in yel033w deletion mutant (1) 432 repressed 0.166 0.10073469 -0.016721959 314. Rosetta 2000: Expression in yel044w deletion mutant (1) 433 induced 0.06 0.111505321 0.006690319 324. Rosetta 2000: Expression in yer044c (haploid) deletion mutant (1) 443 induced 0.113 0.109943055 0.012423565 325. Rosetta 2000: Expression in yer050c deletion mutant (1) 444 induced 0.196 0.138446602 0.027135534 332. Rosetta 2000: Expression in cells with CMD1 under tet promoter(1) 451 induced -0.166 0.111955284 -0.018584577 337. Rosetta 2000: Expression in yhr011w (**14) deletion mutant (1) 456 repressed -0.189 0.10942261 0.020680873 338. Rosetta 2000: Expression in yhr022c deletion mutant (1) 457 induced 0.013 0.131969754 0.001715607 339. Rosetta 2000: Expression in yhr031c deletion mutant (1) 458 repressed 0.106 0.106909074 -0.011332362 342. Rosetta 2000: Expression in yil037c (haploid) deletion mutant (1) 461 induced 0.279 0.104836165 0.02924929 344. Rosetta 2000: Expression in yjl107c (haploid) deletion mutant (1) 463 repressed -0.126 0.096679425 0.012181608 347. Rosetta 2000: Expression in yml011c deletion mutant (1) 466 induced -0.066 0.099522965 -0.006568516 353. Rosetta 2000: Expression in ymr014w deletion mutant (1) 472 repressed 0.08 0.118985717 -0.009518857 354. Rosetta 2000: Expression in ymr025w deletion mutant (1) 473 repressed 0.073 0.098738331 -0.007207898 356. Rosetta 2000: Expression in ymr030w deletion mutant (1) 475 induced -0.07 0.1048455 -0.007339185 359. Rosetta 2000: Expression in ymr034c deletion mutant (1) 478 repressed 0.053 0.11162388 -0.005916066 373. Rosetta 2000: Expression in ymr293c deletion mutant (1) 492 bimodal -0.023 0.138651512 -0.003188985 378. Rosetta 2000: Expression in yor021c deletion mutant (1) 497 induced 0.05 0.105695948 0.005284797 379. Rosetta 2000: Expression in yor051c (**14) deletion mutant (1) 498 repressed -0.063 0.110358943 0.006952613 381. Rosetta 2000: Expression in yor078w deletion mutant (1) 500 repressed 0.242 0.105160101 -0.025448744 382. Rosetta 2000: Expression in yor080w (**3) deletion mutant (1) 501 induced 0.003 0.15110997 0.00045333 386. Rosetta 2000: Expression in cells with CDC42 under tet promoter(1) 505 induced -0.09 0.131052558 -0.01179473 388. Rosetta 2000: Expression in cells with FKS1 under tet promoter(1) 507 induced -0.193 0.148855956 -0.028729199 389. Rosetta 2000: Expression in cells with HMG2 under tet promoter(1) 508 induced 0.076 0.11915422 0.009055721 391. Rosetta 2000: Expression in cells with KAR2 under tet promoter(1) 510 induced -0.116 0.120169903 -0.013939709 393. Rosetta 2000: Expression in cells with RHO1 under tet promoter(1) 512 induced -0.033 0.159834298 -0.005274532 397. Rosetta 2000: Expression in response to Cycloheximide white(1) 516 repressed 0.08 0.105312267 -0.008424981 398. Rosetta 2000: Expression in response to Doxycycline(1) 517 induced -0.076 0.154687267 -0.011756232 400. Rosetta 2000: Expression in response to Glucosamine(1) 519 induced -0.03 0.106405433 -0.003192163 401. Rosetta 2000: Expression in response to HU(1) 520 induced 0.229 0.131394698 0.030089386 403. Rosetta 2000: Expression in response to Lovastatin(1) 522 induced 0.193 0.128648712 0.024829201 406. Rosetta 2000: Expression in response to Terbinafine(1) 525 induced -0.063 0.120025672 -0.007561617 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(1) 527 induced -0.11 0.12290562 -0.013519618 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(2) 528 repressed 0.28 0.11634522 -0.032576662 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(4) 530 repressed 0 0.14178118 0 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(11) 537 bimodal 0.99 0.10782627 0.106748007 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(1) 540 bimodal 0.15 0.136536128 0.020480419 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(3) 542 repressed -0.2 0.115649272 0.023129854 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(4) 543 repressed -0.25 0.130692214 0.032673054 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(7) 546 induced 0.14 0.121762509 0.017046751 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(8) 547 induced 0.3 0.130322069 0.039096621 Expression in PDR1-3 mutant(1) 555 repressed 0.043 0.13933019 -0.005991198 Low-Pi vs High-Pi in WT (NBW7) exp1(1) 577 induced -0.168 0.097965833 -0.01645826 Low-Pi vs High-Pi in WT (NBW7) exp2(1) 578 induced 0.151 0.106717233 0.016114302 Low-Pi vs High-Pi in WT (DBY7286)(1) 579 induced -0.12 0.128933906 -0.015472069 pho85 vs WT(1) 582 induced -0.358 0.105370612 -0.037722679 PHO81c vs WT exp2(1) 584 induced -0.252 0.151736837 -0.038237683 428. Expression in strain PM38 (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 585 induced -0.185 0.16267177 -0.030094277 429. Expression in strain YHE711 (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 586 induced 0.076 0.134898712 0.010252302 430. Expression in strain PM38 (wild type), glucose versus ethanol: strain was shifted from medium containing dextrose as carbon source, ammonium sulfate as nirogen source, supplemented with leucine and uracil to same medium for 30 min, compared to a shift to a medium with synthetic ethanol instead of glucose for 30 min(1) 587 induced 0.179 0.150629201 0.026962627 431. Expression in strain PM71 (gln3 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 588 induced 0.432 0.167504201 0.072361815 432. Expression in strain MS221 in response to 30 min 50 nM treatment with rapamycin in YPD(1) 589 induced 0.181 0.12092233 0.021886942 433. Expression in strain PH2 (ure2 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 590 induced 0 0.099853435 0 434. Expression in strain P40-1A (gln3 ure2 double deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 591 bimodal 0.199 0.159538835 0.031748228 437. Expression in wild type versus strain PH2 (ure2 deletion) under steady state conditions in YPD(1) 594 induced -0.015 0.10492205 -0.001573831 439. Expression in strain Jk9-3da (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 596 induced 0.045 0.133781273 0.006020157 440. Expression in strain TS19-4c in response to 30 min 50 nM treatment with rapamycin in YPD(1) 597 induced -0.438 0.102003361 -0.044677472 441. Expression in wild type versus strain TS19-4c under steady state conditions in YPD(1) 598 induced -0.789 0.174221901 -0.13746108 442. Expression in strain PM38 (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 599 induced 0.259 0.138968447 0.035992828 443. Expression in strain YHE710 (mks1 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 600 induced 0.142 0.16248553 0.023072945 448. Expression in response to 0.1% MMS for 60 min(1) 605 repressed 0 0.097953697 0 450. Expression in response to low MNNG (8 microgram/ml) for 60 min(1) 607 induced 0 0.11326643 0 451. Expression in response to BCNU (200 micromolar) for 60 min(1) 608 induced 0 0.119966393 0 454. Expression in response to tBuOOH (5mM) for 60 min(1) 611 induced 0 0.114143484 0 458. Expression of S arrested cells (with hydroxyurea) in response to 0.1% MMS for 60 min(1) 615 repressed 0 0.101031553 0 459. Expression of G2 arrested cells (alpha nocodazole) in response to 0.1% MMS for 60 min(1) 616 repressed 0 0.105334205 0 460. Expression of stationary phase cells in response to 0.1% MMS for 60 min(1) 617 repressed 0 0.116659821 0 465. Expression in rpd3 deletion(1) 622 induced -0.224 0.124495892 -0.02788708 467. Expression in sin3 deletion(1) 624 induced -0.257 0.110634335 -0.028433024 469. Expression in hda1 deletion(1) 626 induced -0.358 0.184841766 -0.066173352 470. Expression in hda1 deletion(1) 627 induced -0.109 0.114136016 -0.012440826 471. Expression in sin3 deletion(1) 628 induced -2.039 0.104602315 -0.213284121 472. Expression in sap3 deletion(1) 629 induced -1.889 0.137246079 -0.259257844 473. Expression in ume6 deletion(1) 630 induced -0.729 0.114299851 -0.083324591 474. Expression in hda1 deletion(1) 631 induced -1.113 0.129143017 -0.143736178 475. Expression in hos2 deletion(1) 632 induced -0.549 0.114911781 -0.063086568 477. Expression in response to trichostatin A (TSA): 15min,30min,60min,120min(1) 634 induced -0.179 0.108296303 -0.019385038 477. Expression in response to trichostatin A (TSA): 15min,30min,60min,120min(2) 635 induced 0.346 0.122921957 0.042530997 477. Expression in response to trichostatin A (TSA): 15min,30min,60min,120min(3) 636 induced -0.465 0.144869772 -0.067364444 477. Expression in response to trichostatin A (TSA): 15min,30min,60min,120min(4) 637 induced -0.742 0.129910848 -0.096393849 478. Expression in haploid cells in response to rapamycin (100nM) for: 0min,15min,30min,60min,120min(2) 639 induced -1.219 0.145993745 -0.177966376 478. Expression in haploid cells in response to rapamycin (100nM) for: 0min,15min,30min,60min,120min(3) 640 induced -1.125 0.11085885 -0.124716206 478. Expression in haploid cells in response to rapamycin (100nM) for: 0min,15min,30min,60min,120min(4) 641 induced -1.185 0.13134382 -0.155642427 478. Expression in haploid cells in response to rapamycin (100nM) for: 0min,15min,30min,60min,120min(5) 642 induced 1.236 0.156676624 0.193652308 479. Expression in diploid cells in response to rapamycin (100nM) for: 15min,30min,90min,120min(1) 643 induced 1.237 0.111348021 0.137737502 479. Expression in diploid cells in response to rapamycin (100nM) for: 15min,30min,90min,120min(2) 644 induced -1.22 0.175803305 -0.214480032 479. Expression in diploid cells in response to rapamycin (100nM) for: 15min,30min,90min,120min(4) 646 repressed -2.117 0.103723394 0.219582426 480. Expression in haploid cells deprived to amino acids in response to rapamycin for: 15min,30min,60min,90min,120min(1) 647 induced -1.192 0.121081031 -0.144328588 480. Expression in haploid cells deprived to amino acids in response to rapamycin for: 15min,30min,60min,90min,120min(3) 649 repressed -1.24 0.117558346 0.145772349 480. Expression in haploid cells deprived to amino acids in response to rapamycin for: 15min,30min,60min,90min,120min(5) 651 repressed 1.546 0.095464899 -0.147588734 481. Expression in response to heat shock: 15,30,45,60,120 min(1) 652 induced 0 0.141561333 0 481. Expression in response to heat shock: 15,30,45,60,120 min(4) 655 repressed 0 0.104475822 0 482. Expression in response to acid: 10,20,40,60,80,100 min(1) 657 induced 0 0.119362397 0 482. Expression in response to acid: 10,20,40,60,80,100 min(2) 658 induced 0 0.127044436 0 482. Expression in response to acid: 10,20,40,60,80,100 min(3) 659 induced 0 0.127025299 0 482. Expression in response to acid: 10,20,40,60,80,100 min(4) 660 induced 0 0.132174664 0 482. Expression in response to acid: 10,20,40,60,80,100 min(5) 661 induced 0 0.118806012 0 482. Expression in response to acid: 10,20,40,60,80,100 min(6) 662 induced 0 0.104246173 0 483. Expression in response to alkali: 10,20,40,60,80,100 min(1) 663 induced 0 0.105505975 0 483. Expression in response to alkali: 10,20,40,60,80,100 min(4) 666 induced 0 0.101418969 0 483. Expression in response to alkali: 10,20,40,60,80,100 min(5) 667 induced 0 0.102854276 0 483. Expression in response to alkali: 10,20,40,60,80,100 min(6) 668 induced 0 0.100523245 0 485. Expression in response to peroxide: 10,20,40,60,120 min(1) 671 induced 0 0.121244399 0 485. Expression in response to peroxide: 10,20,40,60,120 min(2) 672 induced 0 0.133294436 0 485. Expression in response to peroxide: 10,20,40,60,120 min(3) 673 induced 0 0.123334111 0 485. Expression in response to peroxide: 10,20,40,60,120 min(4) 674 bimodal 0 0.119178958 0 485. Expression in response to peroxide: 10,20,40,60,120 min(5) 675 induced 0 0.128560493 0 486. Expression in response to NaCl: 15 30 45 60 120 min(2) 677 induced 0 0.133691187 0 486. Expression in response to NaCl: 15 30 45 60 120 min(3) 678 induced 1.728 0.106781647 0.184518686 487. Expression in response to sorbitol: 15 30 45 90 120 min(1) 681 induced 0 0.131418503 0 487. Expression in response to sorbitol: 15 30 45 90 120 min(2) 682 induced 1.597 0.135441561 0.216300173 487. Expression in response to sorbitol: 15 30 45 90 120 min(3) 683 induced 0.716 0.116815254 0.083639722 488. Brown enviromental changes :Heat Shock 05 minutes hs-1(1) 686 induced 0.43 0.168398058 0.072411165 489. Brown enviromental changes :Heat Shock 10 minutes hs-1(1) 687 induced 0.32 0.172942961 0.055341748 490. Brown enviromental changes :Heat Shock 15 minutes hs-1(1) 688 induced 0.39 0.173197816 0.067547148 491. Brown enviromental changes :Heat Shock 20 minutes hs-1(1) 689 induced 0 0.151988891 0 492. Brown enviromental changes :Heat Shock 30 minutes hs-1(1) 690 induced 0.08 0.153871826 0.012309746 493. Brown enviromental changes :Heat Shock 40 minutes hs-1(1) 691 induced 0 0.164443148 0 494. Brown enviromental changes :Heat Shock 60 minutes hs-1(1) 692 induced -0.1 0.128833084 -0.012883308 495. Brown enviromental changes :Heat Shock 80 minutes hs-1(1) 693 induced 0.07 0.114600448 0.008022031 496. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 694 repressed -0.05 0.144624253 0.007231213 497. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 695 repressed -0.32 0.161772778 0.051767289 498. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 696 repressed -0.11 0.169988798 0.018698768 500. Brown enviromental changes :Heat Shock 015 minutes hs-2(1) 698 induced 0.27 0.152432786 0.041156852 501. Brown enviromental changes :Heat Shock 030inutes hs-2(1) 699 induced 0.3 0.104104742 0.031231423 502. Brown enviromental changes :Heat Shock 060 minutes hs-2(1) 700 repressed 0.19 0.115840179 -0.022009634 504. Brown enviromental changes :37C to 25C shock - 30 min(1) 702 repressed -1.08 0.115169903 0.124383495 505. Brown enviromental changes :37C to 25C shock - 45 min(1) 703 repressed 0.31 0.110981143 -0.034404154 507. Brown enviromental changes :37C to 25C shock - 90 min(1) 705 induced -0.19 0.113477409 -0.021560708 508. Brown enviromental changes :heat shock 17 to 37, 20 minutes(1) 706 induced 0.65 0.151260736 0.098319478 509. Brown enviromental changes :heat shock 21 to 37, 20 minutes(1) 707 induced 0.38 0.168284634 0.063948161 510. Brown enviromental changes :heat shock 25 to 37, 20 minutes(1) 708 induced 0.21 0.152440254 0.032012453 511. Brown enviromental changes :heat shock 29 to 37, 20 minutes(1) 709 induced 0.04 0.161737771 0.006469511 512. Brown enviromental changes :heat shock 33 to 37, 20 minutes(1) 710 induced -0.13 0.168909167 -0.021958192 514. Brown enviromental changes :29C to 33C - 15 minutes(1) 712 induced 0.2 0.157644231 0.031528846 515. Brown enviromental changes :29C to 33C - 30 minutes(1) 713 repressed 1.39 0.097275019 -0.135212276 517. Brown enviromental changes :29C +1M sorbitol to 33C + 1M sorbitol - 5 minutes(1) 715 induced -0.24 0.167205004 -0.040129201 518. Brown enviromental changes :29C +1M sorbitol to 33C + 1M sorbitol - 15 minutes(1) 716 induced 0.17 0.148890497 0.025311384 520. Brown enviromental changes :29C +1M sorbitol to 33C + *NO sorbitol - 5 minutes(1) 718 induced -0.03 0.116175317 -0.00348526 521. Brown enviromental changes :29C +1M sorbitol to 33C + *NO sorbitol - 15 minutes(1) 719 induced -0.34 0.147653566 -0.050202212 522. Brown enviromental changes :29C +1M sorbitol to 33C + *NO sorbitol - 30 minutes(1) 720 repressed 0.18 0.110709485 -0.019927707 524. Brown enviromental changes :constant 0.32 mM H2O2 (20 min) redo(1) 722 induced -0.36 0.126217326 -0.045438237 525. Brown enviromental changes :constant 0.32 mM H2O2 (30 min) redo(1) 723 induced -0.35 0.132149459 -0.04625231 527. Brown enviromental changes :constant 0.32 mM H2O2 (50 min) redo(1) 725 induced 0 0.130764563 0 528. Brown enviromental changes :constant 0.32 mM H2O2 (60 min) redo(1) 726 induced -0.23 0.13907767 -0.031987864 529. Brown enviromental changes :constant 0.32 mM H2O2 (80 min) redo(1) 727 induced -0.06 0.128456404 -0.007707384 530. Brown enviromental changes :constant 0.32 mM H2O2 (100 min) redo(1) 728 induced -0.35 0.156809186 -0.054883215 531. Brown enviromental changes :constant 0.32 mM H2O2 (120 min) redo(1) 729 induced -0.06 0.146390497 -0.00878343 532. Brown enviromental changes :constant 0.32 mM H2O2 (160 min) redo(1) 730 induced 0.04 0.131823189 0.005272928 534. Brown enviromental changes :1 mM Menadione (20 min) redo(1) 732 induced 0.4 0.097297423 0.038918969 535. Brown enviromental changes :1 mM Menadione (30 min) redo(1) 733 induced 0.21 0.136435306 0.028651414 536. Brown enviromental changes :1mM Menadione (40 min) redo(1) 734 bimodal 0.13 0.125353342 0.016295934 537. Brown enviromental changes :1 mM Menadione (50 min)redo(1) 735 induced -0.01 0.136081031 -0.00136081 538. Brown enviromental changes :1 mM Menadione (80 min) redo(1) 736 induced 0.19 0.104167756 0.019791874 539. Brown enviromental changes :1 mM Menadione (105 min) redo(1) 737 induced 0.13 0.110243652 0.014331675 540. Brown enviromental changes :1 mM Menadione (120 min)redo(1) 738 induced 0.26 0.105145164 0.027337743 550. Brown enviromental changes :dtt 000 min dtt-2(1) 748 induced -0.32 0.097847741 -0.031311277 551. Brown enviromental changes :dtt 015 min dtt-2(1) 749 repressed -0.16 0.101237397 0.016197984 552. Brown enviromental changes :dtt 030 min dtt-2(1) 750 repressed 0 0.123450336 0 554. Brown enviromental changes :dtt 120 min dtt-2(1) 752 induced 0.12 0.110365945 0.013243913 555. Brown enviromental changes :dtt 240 min dtt-2(1) 753 induced 0.25 0.131007748 0.032751937 557. Brown enviromental changes :1.5 mM diamide (5 min)(1) 755 induced 0.01 0.194643391 0.001946434 558. Brown enviromental changes :1.5 mM diamide (10 min)(1) 756 induced -0.34 0.204822162 -0.069639535 559. Brown enviromental changes :1.5 mM diamide (20 min)(1) 757 induced -0.14 0.195636202 -0.027389068 560. Brown enviromental changes :1.5 mM diamide (30 min)(1) 758 induced -0.2 0.174296117 -0.034859223 561. Brown enviromental changes :1.5 mM diamide (40 min)(1) 759 induced -0.16 0.168949309 -0.027031889 562. Brown enviromental changes :1.5 mM diamide (50 min)(1) 760 induced -0.05 0.155584391 -0.00777922 563. Brown enviromental changes :1.5 mM diamide (60 min)(1) 761 induced 0.04 0.150268391 0.006010736 564. Brown enviromental changes :1.5 mM diamide (90 min)(1) 762 induced 0.23 0.126568801 0.029110824 565. Brown enviromental changes :1M sorbitol - 5 min(1) 763 induced 0.02 0.132514937 0.002650299 566. Brown enviromental changes :1M sorbitol - 15 min(1) 764 induced 0.54 0.128611837 0.069450392 567. Brown enviromental changes :1M sorbitol - 30 min(1) 765 induced 0.04 0.107973301 0.004318932 568. Brown enviromental changes :1M sorbitol - 45 min (1) 766 induced -0.11 0.136109037 -0.014971994 572. Brown enviromental changes :Hypo-osmotic shock - 5 min(1) 770 induced 0.35 0.105746826 0.037011389 573. Brown enviromental changes :Hypo-osmotic shock - 15 min(1) 771 repressed 0.12 0.13686053 -0.016423264 574. Brown enviromental changes :Hypo-osmotic shock - 30 min(1) 772 repressed 0.09 0.102076176 -0.009186856 575. Brown enviromental changes :Hypo-osmotic shock - 45 min(1) 773 repressed 0.07 0.133518484 -0.009346294 576. Brown enviromental changes :Hypo-osmotic shock - 60 min(1) 774 repressed 0.25 0.098096527 -0.024524132 578. Brown enviromental changes :aa starv 0.5 h(1) 776 induced 0.12 0.117050504 0.01404606 579. Brown enviromental changes :aa starv 1 h(1) 777 bimodal -0.14 0.108079724 -0.015131161 582. Brown enviromental changes :aa starv 6 h(1) 780 induced 0.09 0.100703417 0.009063308 585. Brown enviromental changes :Nitrogen Depletion 2 h(1) 783 repressed 0 0.150268857 0 586. Brown enviromental changes :Nitrogen Depletion 4 h(1) 784 repressed 0.2 0.130915329 -0.026183066 587. Brown enviromental changes :Nitrogen Depletion 8 h(1) 785 bimodal 0.21 0.103693521 0.021775639 588. Brown enviromental changes :Nitrogen Depletion 12 h(1) 786 induced 0.46 0.113088125 0.052020538 590. Brown enviromental changes :Nitrogen Depletion 2 d(1) 788 induced 0.43 0.098633308 0.042412323 591. Brown enviromental changes :Nitrogen Depletion 3 d(1) 789 induced 0.36 0.102773525 0.036998469 592. Brown enviromental changes :Nitrogen Depletion 5 d(1) 790 induced 0.55 0.103857823 0.057121803 603. Brown enviromental changes :YPD 6 h ypd-2(1) 794 induced 0.55 0.131378827 0.072258355 604. Brown enviromental changes :YPD 8 h ypd-2(1) 795 induced 0.57 0.160022872 0.091213037 605. Brown enviromental changes :YPD 10 h ypd-2(1) 796 induced 0.5 0.165393484 0.082696742 606. Brown enviromental changes :YPD 12 h ypd-2(1) 797 induced -0.06 0.13816981 -0.008290189 607. Brown enviromental changes :YPD 1 d ypd-2(1) 798 induced 0.02 0.121330751 0.002426615 608. Brown enviromental changes :YPD 2 d ypd-2(1) 799 induced 0.53 0.118003174 0.062541682 609. Brown enviromental changes :YPD 3 d ypd-2(1) 800 induced -0.21 0.126998693 -0.026669726 610. Brown enviromental changes :YPD 5 d ypd-2(1) 801 induced -0.23 0.132527539 -0.030481334 611. Brown enviromental changes :YPD stationary phase 2 h ypd-1(1) 802 induced 0.09 0.137594754 0.012383528 612. Brown enviromental changes :YPD stationary phase 4 h ypd-1(1) 803 induced 0.02 0.121160848 0.002423217 613. Brown enviromental changes :YPD stationary phase 8 h ypd-1(1) 804 induced 0.27 0.123883495 0.033448544 614. Brown enviromental changes :YPD stationary phase 12 h ypd-1(1) 805 induced 1.03 0.176076363 0.181358654 615. Brown enviromental changes :YPD stationary phase 1 d ypd-1(1) 806 induced 0.33 0.173384522 0.057216892 616. Brown enviromental changes :YPD stationary phase 2 d ypd-1(1) 807 induced 0.38 0.13645351 0.051852334 617. Brown enviromental changes :YPD stationary phase 3 d ypd-1(1) 808 induced 0.31 0.163692121 0.050744558 618. Brown enviromental changes :YPD stationary phase 5 d ypd-1(1) 809 induced 0.26 0.144096341 0.037465049 619. Brown enviromental changes :YPD stationary phase 7 d ypd-1(1) 810 induced 0.16 0.140350541 0.022456087 620. Brown enviromental changes :YPD stationary phase 13 d ypd-1(1) 811 induced -0.21 0.1525 -0.032025 621. Brown enviromental changes :YPD stationary phase 22 d ypd-1(1) 812 induced 0.11 0.136743372 0.015041771 622. Brown enviromental changes :YPD stationary phase 28 d ypd-1(1) 813 induced -0.28 0.134191561 -0.037573637 623. Brown enviromental changes :DBY7286 37degree heat - 20 min(1) 814 induced 0.2 0.136527259 0.027305452 626. Brown enviromental changes :DBYyap1- 37degree heat - 20 min (redo)(1) 817 induced 0.23 0.120054145 0.027612453 627. Brown enviromental changes :DBYyap1 + 37degree heat (repeat)(1) 818 bimodal 0.08 0.150417756 0.01203342 628. Brown enviromental changes :DBY7286 + 0.3 mM H2O2 (20 min)(1) 819 induced -0.45 0.125167102 -0.056325196 631. Brown enviromental changes :DBYyap1- + 0.3 mM H2O2 (20 min)(1) 822 induced -0.18 0.132441187 -0.023839414 632. Brown enviromental changes :DBYyap1 + 0.32 mM H2O2 (20 min)(1) 823 induced 0.66 0.117383308 0.077472984 633. Brown enviromental changes :MSN2 overexpression (repeat)(1) 824 induced -0.02 0.115491038 -0.002309821 634. Brown enviromental changes :MSN4 overexpression(1) 825 induced -0.09 0.117472461 -0.010572521 636. Brown enviromental changes :ethanol car-1(1) 827 induced 0.44 0.147699776 0.064987901 638. Brown enviromental changes :glucose car-1(1) 829 repressed -0.01 0.125756161 0.001257562 639. Brown enviromental changes :mannose car-1(1) 830 repressed -0.17 0.11706404 0.019900887 641. Brown enviromental changes :sucrose car-1(1) 832 repressed -0.21 0.124237304 0.026089834 642. Brown enviromental changes :YP ethanol vs reference pool car-2(1) 833 induced -0.22 0.128429798 -0.028254556 643. Brown enviromental changes :YP fructose vs reference pool car-2(1) 834 repressed -0.46 0.172626494 0.079408187 644. Brown enviromental changes :YP galactose vs reference pool car-2(1) 835 induced 0.33 0.099477689 0.032827637 645. Brown enviromental changes :YP glucose vs reference pool car-2(1) 836 repressed 0.64 0.146167849 -0.093547423 646. Brown enviromental changes :YP mannose vs reference pool car-2(1) 837 repressed 0.62 0.124097274 -0.07694031 647. Brown enviromental changes :YP raffinose vs reference pool car-2(1) 838 induced -0.61 0.116875934 -0.071294319 648. Brown enviromental changes :YP sucrose vs reference pool car-2(1) 839 repressed -0.36 0.14642037 0.052711333 650. Brown enviromental changes :21 deg growth ct-1(1) 841 repressed -0.43 0.107396378 0.046180442 651. Brown enviromental changes :25 deg growth ct-1(1) 842 repressed -0.31 0.101285941 0.031398642 654. Brown enviromental changes :steady state 15 dec C ct-2(1) 845 induced -0.17 0.141585605 -0.024069553 660. Brown enviromental changes :steady state 36 dec C ct-2(1) 851 induced 0.03 0.100362211 0.003010866 661. Brown enviromental changes :steady state 36 dec C ct-2(1) 852 induced 0.15 0.129254574 0.019388186 668. Expression in Rho0 containing rtg2 deletion vs Rho0(1) 856 induced 0.241 0.111996359 0.026991123 676. Expression in gcr1 mutant YPGL versus GCR1 YPGL(1) 864 bimodal -0.322 0.105842046 -0.034081139 677. Expression in gcr1 mutant YPGL+glucose versus GCR1 YPGL+glucose(1) 865 induced -0.189 0.164605583 -0.031110455 678. Expression in gcr1 mutant YPGL+glucose versus gcr1 mutant YPGL(1) 866 repressed -0.164 0.15864031 0.026017011 679. Expression in GCR1 YPGL+glucose versus GCR1 YPGL(1) 867 repressed -0.214 0.192568148 0.041209584 680. Expression in GCR1 YPD versus GCR1 YPGL(1) 868 repressed -0.057 0.140498973 0.008008441 681. Expression in response to 0.4M NaCl for 10 min in wild type(1) 869 induced 0.678 0.108431665 0.073516669 682. Expression in response to 0.4M NaCl for 10 min in hog1 mutant(1) 870 induced 0.379 0.103002707 0.039038026 (Rich Media 2% Glucose YPD-185009) kss1 5mM aF, 30 min. 883 induced -0.14 0.106480116 -0.014907216 Addition of 1M NaCl (10) 915 induced -1.63 0.123906833 -0.201968139 Addition of 1M NaCl (30) 916 induced -1.81 0.098895164 -0.179000247 Addition of 1M NaCl (90) 917 bimodal 1.44 0.173590366 0.249970127 Addition of .5M NaCl in gpd1gpd2 deletion mutant (60) 918 induced -0.1 0.144821229 -0.014482123 DES460 + 0.02% MMS - 15 min 920 induced 0.04 0.099536968 0.003981479 DES460 + 0.02% MMS - 90 min 924 induced -0.18 0.115840646 -0.020851316 DES459 (mec1-) + 0.02% MMS - 15 min 927 repressed -0.27 0.100105022 0.027028356 DES459 (mec1-) + 0.02% MMS - 45 min 929 repressed -0.3 0.109387603 0.032816281 DES459 (mec1-) + 0.02% MMS - 60 min 930 repressed -0.25 0.13273665 0.033184163 DES459 (mec1-) + 0.02% MMS - 90 min 931 repressed -0.34 0.135589059 0.04610028 dun1- + 0.02% MMS - 90 min 934 repressed -0.06 0.111803585 0.006708215 dun1- + 0.02% MMS - 120 min 935 repressed -0.28 0.114776886 0.032137528 wt_plus_gamma_5_min 936 induced -0.26 0.162903753 -0.042354976 wt_plus_gamma_10_min 937 induced -0.1 0.174924384 -0.017492438 wt_plus_gamma_20_min 938 induced 0.1 0.154317588 0.015431759 wt_plus_gamma_30_min 939 induced 0.04 0.120231983 0.004809279 DES460 (wt) - mock irradiation - 5 min 944 induced 0.28 0.134163088 0.037565665 mec1_plus_gamma_5_min 948 induced 0.25 0.130162901 0.032540725 mec1_plus_gamma_10_min 949 induced -0.42 0.129928585 -0.054570006 mec1_plus_gamma_30_min 951 repressed 0.04 0.1249986 -0.004999944 mec1_plus_gamma_45_min 952 repressed -0.21 0.147152259 0.030901974 mec1_plus_gamma_60_min 953 repressed 0.3 0.142798264 -0.042839479 mec1_plus_gamma_90_min 954 repressed -0.05 0.131558999 0.00657795 DES459 (mec1) - mock irradiation - 5 min 956 induced 0.45 0.106681759 0.048006791 DES460 (wild type) + heat 20 min 960 bimodal 0.57 0.099990198 0.056994413 DES459 (mec1) + heat 20 min 961 induced 0.17 0.111947349 0.019031049 MHY1 (dun1) + heat 20 min 962 induced -0.29 0.113603902 -0.032945132 DES460 + 0.02% MMS - 5 min 966 induced 0.37 0.129310586 0.047844917 wt-gal 973 induced 0.023 0.123381255 0.002837769 gal1+gal 975 repressed -0.027 0.104989264 0.00283471 gal3+gal 977 induced 0.013 0.151380228 0.001967943 gal4+gal 978 induced -0.309 0.124367999 -0.038429712 gal5+gal 979 repressed 0.046 0.10482963 -0.004822163 gal7+gal 981 induced -0.94 0.165419156 -0.155494007 gal10+gal 982 induced -0.116 0.151572535 -0.017582414 gal1-gal 984 induced -0.535 0.103989451 -0.055634356 gal2-gal 985 induced -0.266 0.154371266 -0.041062757 gal3-gal 986 induced -1.013 0.137275485 -0.139060067 gal4-gal 987 induced -0.777 0.160009335 -0.124327254 gal5-gal 988 induced 0.136 0.115040142 0.015645459 gal6-gal 989 induced -1.116 0.120330004 -0.134288284 gal7-gal 990 bimodal -0.658 0.125558252 -0.08261733 gal10-gal 991 induced 0.226 0.174871639 0.03952099 gal80-gal 992 repressed -0.831 0.106278006 0.088317023 gal1gal10+gal 993 induced -0.943 0.130471901 -0.123035002 gal2gal80-gal 994 repressed -0.811 0.137570482 0.111569661 gal4gal80-gal 995 repressed -0.043 0.123757468 0.005321571 BY4741 GAL t=30min vs. t=0 (YT00261) 996 repressed 0 0.101683159 0 BY4741 GAL t=60min vs. t=0 (YT00259) 997 induced 0 0.14004621 0 BY4741 GAL t=90min vs. t=0 (YT00262) 998 repressed 0 0.147144324 0 sfp1D GLU vs. BY4741 GLU (YT00238) 999 repressed 0 0.109793689 0 sfp1::GALSFP1 t=0 RAFF vs. BY4741 t=0 RAF (YT00293) 1000 repressed 0 0.113961912 0 sfp1::GALSFP1 t=10min GAL vs. t=0 RAFF (YT00270) 1001 induced 0 0.16692121 0 sfp1::GALSFP1 t=20min GAL vs. t=0 RAFF (YT00234) 1002 repressed 0 0.110691748 0 sfp1::GALSFP1 t=40min GAL vs. t=0 RAFF (YT00268) 1004 repressed 0 0.168217886 0 sfp1::GALSFP1 t=60min GAL vs. t=0 RAFF (YT00267) 1006 repressed 0 0.157247479 0 YAL003W 1008 induced -0.0044103 0.097771658 -0.000431202 YAL038W 1010 induced 0.099565 0.109346994 0.010887133 YBL020W 1013 induced 0.14943 0.120004201 0.017932228 YBL084C 1015 induced 0.049483 0.109095874 0.005398391 YBR002C 1016 induced -0.0020356 0.09879761 -0.000201112 YBR088C 1018 induced 0.030158 0.123860624 0.003735389 YBR142W 1019 induced 0.13479 0.100428491 0.013536756 YBR143C 1020 induced 0.1011 0.121330751 0.012266539 YBR196C 1024 induced 0.017383 0.109654126 0.001906118 YBR243C 1026 induced -0.0091145 0.104696602 -0.000954257 YCR013C 1028 induced -0.013908 0.108233757 -0.001505315 YCR042C 1029 induced 0.061234 0.111915609 0.00685304 YDL031W 1031 induced 0.11739 0.103709858 0.0121745 YDL047W 1032 induced -0.042777 0.150180639 -0.006424277 YDL055C 1033 induced 0.14597 0.134241038 0.019595164 YDL060W 1034 induced 0.080534 0.098541355 0.00793593 YDL132W 1037 induced -0.064712 0.129823096 -0.008401112 YDR047W 1039 induced 0.30001 0.128387789 0.038517621 YDR062W 1040 induced 0.039909 0.095869586 0.003826059 YDR141C 1042 induced 0.019306 0.162746453 0.003141983 YDR489W 1047 induced 0.069447 0.131650485 0.009142731 YER172C 1050 induced 0.036877 0.108884429 0.004015331 YFL005W 1051 induced 0.18793 0.102744586 0.01930879 YFL024C 1052 induced -0.17411 0.146119772 -0.025440914 YGL116W 1055 induced -0.13145 0.104013723 -0.013672604 YGR048W 1057 induced 0.1887 0.121735437 0.022971477 YHR090C 1068 induced 0.093434 0.097345034 0.009095336 YHR118C 1069 induced -0.015884 0.136338219 -0.002165596 YJL039C 1079 repressed -0.039839 0.097332898 0.003877645 YJL081C 1082 induced -0.042029 0.121907674 -0.005123658 YJL091C 1083 induced 0.16141 0.096845594 0.015631847 YJL194W 1084 induced 0.48192 0.116571602 0.056178186 YKL052C 1089 induced -0.071026 0.110701083 -0.007862655 YKR079C 1094 induced -0.016669 0.13800224 -0.002300359 YKR086W 1095 induced 0.14991 0.111965553 0.016784756 YLL003W 1096 induced 0.16827 0.107459391 0.018082192 YLR076C 1101 induced 0.0088789 0.163055452 0.001447753 YLR086W 1102 induced 0.055671 0.137826736 0.007672952 YLR101C 1103 induced -0.011591 0.143417196 -0.001662349 YLR163C 1105 induced 0.044502 0.127200336 0.005660669 YLR291C 1109 induced 0.10929 0.126612211 0.013837448 YLR359W 1112 induced -0.095019 0.107038835 -0.010170723 YLR378C 1113 induced -0.14217 0.125332804 -0.017818565 YLR440C 1115 induced 0.12819 0.132398712 0.016972191 YLR457C 1116 induced 0.038596 0.12231236 0.004720768 YLR459W 1117 induced 0.046835 0.139460885 0.006531651 YML031W 1118 induced -0.025241 0.126971154 -0.003204879 YML046W 1119 induced 0.084378 0.119094007 0.010048914 YMR001C 1121 induced -0.065128 0.111775579 -0.00727972 YMR043W 1122 induced 0.09596 0.107394511 0.010305577 YMR076C 1123 induced 0.061708 0.099461819 0.00613759 YMR079W 1124 induced 0.04854 0.134878174 0.006546987 YMR200W 1126 induced 0.079108 0.105810773 0.008370479 YMR239C 1128 induced -0.00039932 0.103471341 -0.0000413 YNL150W 1132 induced -0.10656 0.118639843 -0.012642262 YNL158W 1133 induced 0.2485 0.113730396 0.028262003 YNL182C 1134 induced -0.13207 0.121152446 -0.016000604 YNL272C 1136 induced -0.030624 0.114852502 -0.003517243 YNR035C 1138 induced -0.14122 0.13506068 -0.019073269 YOR169C 1154 induced 0.084963 0.104880508 0.008910963 YOR204W 1155 induced 0.0082801 0.112737117 0.000933475 YOR232W 1157 induced -0.18107 0.107734317 -0.019507453 YOR261C 1160 induced -0.0006722 0.112229276 -0.0000754 YOR335C 1164 induced 0.045389 0.120893391 0.00548723 YPL010W 1166 induced 0.16132 0.121635549 0.019622247 YPL063W 1167 induced 0.0047557 0.159181292 0.000757018 YPL228W 1172 induced 0.42177 0.097401979 0.041081233 YPL231W 1173 induced 0.1133 0.114654126 0.012990313 YPL243W 1174 induced 0.042898 0.125716019 0.005392966 YPR105C 1176 induced 0.033809 0.096869866 0.003275073 YPR169W 1178 induced -0.071503 0.151448376 -0.010829013 YPR178W 1179 induced 0.080811 0.124666729 0.010074443 YPR180W 1180 induced -0.0035283 0.121380695 -0.000428268 YBR029C 1182 induced 0.19334 0.111231796 0.021505555 YDR412W 1186 induced -0.003598 0.114537435 -0.000412106 YFR037C 1190 induced -0.005923 0.119128547 -0.000705598 YGL073W 1191 induced 0.18664 0.110542849 0.020631717 YGL122C 1192 induced -0.060887 0.131320482 -0.00799571 YGR198W 1196 induced 0.0085443 0.15071742 0.001287775 YHR205W 1201 induced -0.029503 0.096425971 -0.002844855 YJL097W 1202 induced -0.17959 0.152473861 -0.027382781 YKL033W 1204 induced 0.15489 0.113191281 0.017532197 YLR147C 1210 induced -0.13851 0.109308719 -0.015140351 YLR229C 1211 induced 0.0049031 0.121616878 0.0005963 YMR235C 1212 induced -0.17753 0.118237491 -0.020990702 YNL149C 1213 induced 0.16869 0.108748133 0.018344723 YNL222W 1214 induced -0.022077 0.104180825 -0.0023 YNL245C 1215 induced 0.079246 0.13012696 0.010312041 YNL258C 1216 induced -0.020713 0.103799944 -0.002150008 YOR077W 1220 induced -0.062661 0.125705751 -0.007876848 YPL075W 1221 induced 0.00013959 0.108287901 0.0000151 ADR1OE+ 1224 induced -0.013517 0.129338592 -0.00174827 BYE1OE+ 1225 induced -0.06575 0.100611931 -0.006615234 CUP2OE+ 1229 repressed 0.231924 0.101666355 -0.023578868 GAT4OE+ 1232 induced -0.054967 0.146698096 -0.008063554 GIS1OE+ 1234 induced -0.1225395 0.106602875 -0.013063063 HAC1OE+ 1237 repressed 0.127126 0.13101475 -0.016655381 HAP4OE+ 1238 repressed -0.009119 0.107238611 0.000977909 MGA1OE+ 1245 induced 0.080189 0.143900299 0.011539221 MIG1OE+ 1246 induced 0.0746325 0.118537155 0.008846724 MSN4OE+ 1249 induced -0.114819 0.102643764 -0.011785454 RFX1OE+ 1253 induced 0.0203615 0.144296583 0.002938095 ROX1OE+ 1256 bimodal -0.03691 0.13349888 -0.004927444 RSC30OE+ 1257 repressed 0.0742735 0.103175411 -0.007663199 SFP1OE+ 1258 repressed -0.3214155 0.125822909 0.040441433 SIP4OE+ 1259 induced 0.036971 0.101223861 0.003742347 SKN7OE+ 1260 induced 0.0774475 0.178995986 0.013862792 SOK2OE+ 1261 bimodal -0.0845645 0.135153099 -0.011429154 STP2OE+ 1265 induced 0.2454445 0.107858476 0.02647327 SUT1OE+ 1267 repressed -0.2231345 0.152364638 0.033997807 SWI4OE+ 1268 induced 0.041135 0.144982263 0.005963845 TOS8OE+ 1269 induced 0.069239 0.132580751 0.009179759 UPC2OE+ 1270 induced 0.067522 0.137067774 0.00925509 XBP1OE+ 1271 induced 0.0054025 0.125789302 0.000679577 YHP1OE+ 1273 induced -0.079993 0.132868745 -0.01062857 YOX1OE+ 1274 induced 0.06536 0.148160007 0.009683738 YPR015COE+ 1275 induced -0.0586115 0.102350635 -0.005998924 WT/cst6+ 1282 induced 0.069389 0.108580097 0.007534264 WT/gis1+ 1288 induced -0.0060375 0.121033887 -0.000730742 WT/sok2+ 1312 induced -0.0418835 0.138999253 -0.005821775