Fhl1-avgv9v11-0.35bgdsub_lteq600.txt_200 Significant Conditions: condindex ind/rep TFexpr area activator/repressor 1. Cell cycle: Expression in response to Cln3p (set 1)(1) 2 induced 0.65 0.142184932785661 0.0924202063106797 -0.0000142842770001836 2. Cell Cycle: Expression in response to Cln3p (set 2)(1) 3 induced 0.15 0.175318801344287 0.0262978202016431 3. Cell Cycle: Expression in response to Clb2p (set 1, 40 min)(1) 4 repressed -0.07 0.121351755041075 0.00849462285287525 4. Cell Cycle: Expression in response to Clb2p (set 2, 30 min)(1) 5 repressed 0.29 0.104768483943241 -0.0303828603435399 5. Expression during the cell cycle (alpha factor arrest and release)(1) 6 repressed -0.72 0.159538368185213 0.114867625093353 5. Expression during the cell cycle (alpha factor arrest and release)(3) 8 induced -0.72 0.131469846900672 -0.0946582897684838 5. Expression during the cell cycle (alpha factor arrest and release)(4) 9 induced 0.05 0.151467046303211 0.00757335231516055 5. Expression during the cell cycle (alpha factor arrest and release)(5) 10 induced -0.08 0.135295463032114 -0.0108236370425691 5. Expression during the cell cycle (alpha factor arrest and release)(8) 13 repressed 0.26 0.167862677371173 -0.043644296116505 5. Expression during the cell cycle (alpha factor arrest and release)(9) 14 repressed 0 0.190421956684093 0 5. Expression during the cell cycle (alpha factor arrest and release)(10) 15 repressed -0.22 0.138121265870052 0.0303866784914114 5. Expression during the cell cycle (alpha factor arrest and release)(12) 17 induced -0.1 0.164162621359223 -0.0164162621359223 5. Expression during the cell cycle (alpha factor arrest and release)(13) 18 induced 0.03 0.162637696041822 0.00487913088125466 5. Expression during the cell cycle (alpha factor arrest and release)(15) 20 induced 0.35 0.108357449589246 0.0379251073562361 5. Expression during the cell cycle (alpha factor arrest and release)(18) 23 repressed 0.19 0.15057645631068 -0.0286095266990292 6. Expression during the cell cycle (cdc15 arrest and release)(3) 26 induced 0.46 0.118084858103062 0.0543190347274085 6. Expression during the cell cycle (cdc15 arrest and release)(11) 34 induced -0.06 0.106759241971621 -0.00640555451829726 6. Expression during the cell cycle (cdc15 arrest and release)(12) 35 induced -0.16 0.101138909634055 -0.0161822255414488 7. Expression during the cell Cycle (cdc28)(1) 48 repressed -0.49 0.127678771471247 0.062562598020911 7. Expression during the cell Cycle (cdc28)(3) 50 induced 0.04 0.185002333831217 0.00740009335324868 7. Expression during the cell Cycle (cdc28)(4) 51 induced 0.42 0.146959017923824 0.0617227875280061 7. Expression during the cell Cycle (cdc28)(7) 54 repressed 0.4 0.115516710231516 -0.0462066840926064 7. Expression during the cell Cycle (cdc28)(8) 55 repressed 0.25 0.118391990291262 -0.0295979975728155 7. Expression during the cell Cycle (cdc28)(9) 56 repressed 0 0.17239497759522 0 7. Expression during the cell Cycle (cdc28)(10) 57 induced -0.42 0.113454536967886 -0.0476509055265121 7. Expression during the cell Cycle (cdc28)(11) 58 induced -0.37 0.149311053024645 -0.0552450896191186 7. Expression during the cell Cycle (cdc28)(12) 59 induced -1.21 0.121657486930545 -0.147205559185959 7. Expression during the cell Cycle (cdc28)(16) 63 repressed 0.28 0.111952949962659 -0.0313468259895445 7. Expression during the cell Cycle (cdc28)(17) 64 repressed -0.51 0.115723487677371 0.0590189787154592 8. Expression during the cell cycle (cell size selection and release)(2) 66 repressed 0.11 0.134550037341299 -0.0148005041075429 8. Expression during the cell cycle (cell size selection and release)(7) 71 induced 0.11 0.123528752800597 0.0135881628080657 8. Expression during the cell cycle (cell size selection and release)(8) 72 induced 0.23 0.128970780433159 0.0296632794996266 9. Sporulation: time course: t0,t0.5,t2,t5,t7,t9,t11.5(4) 82 repressed 0.916 0.108054518297237 -0.0989779387602691 10. Sporulation: Ectopic expression of Ndt80; deletion of Ndt80: early, mid,(2) 87 induced 0.786 0.11101428304705 0.0872572264749813 10. Sporulation: Ectopic expression of Ndt80; deletion of Ndt80: early, mid,(3) 88 repressed 0.889 0.101702296489918 -0.0904133415795371 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(7) 95 repressed -1.029 0.107380041075429 0.110494062266616 12. Expression in tup1-deleted cells(1) 96 induced -0.105 0.131783047050037 -0.0138372199402539 18. parental strain versus evolved strain 3(1) 102 induced 0.19 0.0977795929798357 0.0185781226661688 26. Fink: Expression in diploid high copy TEC1(1) 110 repressed 0 0.0992083644510829 0 27. Young: Expression in rpb1 mutant(1) 111 repressed 0 0.134322722180732 0 28. Young: Expression in srb4 mutant(1) 112 repressed 0 0.133541822255415 0 29. Young: Expression in srb5 mutant(1) 113 repressed 0 0.115753360716953 0 30. Young: Expression in med6 mutant(1) 114 repressed 0 0.151692961165049 0 34. Young: Expression in taf17 mutant(1) 118 repressed 0 0.109287714712472 0 35. Young: Expression in tfa1 mutant(1) 119 repressed -0.153 0.11337145257655 0.0173458322442121 36. Young: Expression in kin28 mutant(1) 120 repressed 0 0.114403939507095 0 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(3) 124 induced 0 0.104084671396565 0 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(7) 128 repressed 0 0.102867811799851 0 40. Young: Expression in sir3 deletion mutant(1) 130 induced 0 0.107323095593727 0 43. Young: Expression in fcp1 deletion mutant(1) 133 repressed 0 0.134095407020164 0 45. Expression in snf2 mutant cells in minimal medium(1) 135 repressed -0.239 0.108787808065721 0.0260002861277073 47. Expression in swi1 mutant cells in minimal medium(1) 137 repressed -0.038 0.115153099327857 0.00437581777445857 48. Expression in response to 0.15,0.5,1.5,5,15.8,50,158,500 nM alpha-factor(3) 140 repressed -0.1 0.16240571321882 0.016240571321882 48. Expression in response to 0.15,0.5,1.5,5,15.8,50,158,500 nM alpha-factor(4) 141 repressed -0.112 0.167009428678118 0.0187050560119492 48. Expression in response to 0.15,0.5,1.5,5,15.8,50,158,500 nM alpha-factor(5) 142 repressed -0.153 0.207691374159821 0.0317767802464526 48. Expression in response to 0.15,0.5,1.5,5,15.8,50,158,500 nM alpha-factor(6) 143 repressed -0.157 0.204354929051531 0.0320837238610904 48. Expression in response to 0.15,0.5,1.5,5,15.8,50,158,500 nM alpha-factor(7) 144 repressed -0.119 0.188753267363704 0.0224616388162808 48. Expression in response to 0.15,0.5,1.5,5,15.8,50,158,500 nM alpha-factor(8) 145 repressed -0.122 0.195478902165795 0.023848426064227 49. Expression in response to 50 nM alpha-factor: 0,15,30,45,60,90,120 min(2) 147 repressed -0.061 0.18197068707991 0.0111002119118745 49. Expression in response to 50 nM alpha-factor: 0,15,30,45,60,90,120 min(3) 148 repressed -0.106 0.19801717699776 0.0209898207617626 49. Expression in response to 50 nM alpha-factor: 0,15,30,45,60,90,120 min(4) 149 repressed -0.072 0.170031273338312 0.0122422516803585 49. Expression in response to 50 nM alpha-factor: 0,15,30,45,60,90,120 min(5) 150 repressed -0.131 0.143486277072442 0.0187967022964899 49. Expression in response to 50 nM alpha-factor: 0,15,30,45,60,90,120 min(6) 151 repressed -0.195 0.136540328603435 0.0266253640776698 49. Expression in response to 50 nM alpha-factor: 0,15,30,45,60,90,120 min(7) 152 repressed -0.097 0.112878080657207 0.0109491738237491 50. Expression in response to 50 nM alpha-factor in bni1 deletion mutant: 60,90,120 min(1) 153 repressed -0.109 0.183320575056012 0.0199819426811053 50. Expression in response to 50 nM alpha-factor in bni1 deletion mutant: 60,90,120 min(2) 154 repressed -0.136 0.15673497012696 0.0213159559372666 50. Expression in response to 50 nM alpha-factor in bni1 deletion mutant: 60,90,120 min(3) 155 repressed -0.12 0.162755321135175 0.019530638536221 51. Expression in response to 50 nM alpha-factor in kss1 deletion mutant 30 min(1) 156 repressed -0.072 0.2002963965646 0.0144213405526512 52. Expression in response to 50 nM alpha-factor in fus3 deletion mutant 30 min(1) 157 repressed 0.036 0.153574495892457 -0.00552868185212845 53. Expression in response to overproduction of Ste4p(1) 158 repressed -0.16 0.126083831217326 0.0201734129947722 54. Expression in response to overproduction of Ste5p(1) 159 repressed -0.054 0.167959764749813 0.0090698272964899 55. Expression in response to overproduction of Ste11p(1) 160 repressed -0.059 0.0969655526512323 0.00572096760642271 56. Expression in response to overproduction of Ste12p(1) 161 repressed 0.458 0.109877240477969 -0.0503237761389098 59. Expression in sst2 deletion mutant cells(1) 164 repressed -0.062 0.10028146004481 0.00621745052277822 61. Expression in response to alpha-factor in rst1 rst2 double deletion mutant cells(1) 166 repressed -0.196 0.144335791635549 0.0282898151605676 63. Expression in response to alpha-factor in fus3 loss-of-function mutant cells(1) 168 induced -0.117 0.105963405526512 -0.0123977184466019 71. Expression in bni1 deletion mutant cells(1) 176 induced -0.036 0.0983201082897685 -0.00353952389843167 73. Expression in response to overproduction of activated Pkc1p(1) 178 repressed 0.135 0.104297983569828 -0.0140802277819268 74. Expression in response to overproduction of activated Rho1p(1) 179 repressed 0.011 0.100628734129948 -0.00110691607542943 75. Expression in fus3 deletion mutant cells treated with alpha-factor compared to wild-type cells treated with alpha-factor(1) 180 bimodal 0.073 0.143929238237491 0.0105068343913368 76. Expression in tec1 deletion mutant cells treated with alpha-factor compared to wild-type cells treated with alpha-factor: 30,120 min(1) 181 repressed 0.027 0.106916542195668 -0.00288674663928304 77. Expression in tec1 deletion mutant cells(1) 183 induced 0.011 0.101778846153846 0.00111956730769231 78. Expression in kss1 deletion mutant cells(1) 184 induced -0.05 0.0994417475728155 -0.00497208737864078 79. Expression in fus3 deletion mutant cells(1) 185 repressed -0.048 0.138763536221061 0.00666064973861093 82. Expression in response to alpha-factor in fus3 deletion mutant cells(1) 188 repressed -0.066 0.163043315907394 0.010760858849888 84. Expression in rst1 rst2 tec1 triple deletion mutant cells(1) 190 induced -0.026 0.113096060492905 -0.00294049757281553 87. Expression in response to a-factor in wild-type alpha cells(1) 193 repressed -0.17 0.184628454070202 0.0313868371919343 88. Expression in response to DNA damage by MMS(1) 194 repressed 0 0.116314880507842 0 92. Expression in cna1 cna2 double mutant cells(1) 198 repressed 0.222 0.0961991224794623 -0.0213562051904406 94. Expression in response to 1ug/mL FK506(1) 200 induced 0.122 0.11712145257655 0.0142888172143391 96. Heat-shock induced expression in med2 deleted cells(1) 202 repressed 0.074 0.102541075429425 -0.00758803958177745 99. Church: mating type a glucose 30 C vs. mating type a glactose 30 C FOLLOWED BY 30 C HEAT SHOCK(1) 205 repressed 0 0.103755601194922 0 102. Young: Expression in taf25_2 deletion mutant(1) 208 repressed 0 0.101727501867065 0 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(3) 215 repressed -0.27 0.112418782673637 0.030353071321882 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(4) 216 repressed 0.75 0.113520817774459 -0.0851406133308443 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(14) 226 repressed 1.01 0.0963932972367438 -0.0973572302091112 111. Rosetta 2000: Expression in aep2 deletion mutant (1) 230 repressed -0.066 0.109686799850635 0.00723932879014191 114. Rosetta 2000: Expression in anp1 deletion mutant (1) 233 induced -0.286 0.113733196415235 -0.0325276941747572 121. Rosetta 2000: Expression in ase1 (**12) deletion mutant (1) 240 repressed -0.193 0.0969594846900672 0.018713180545183 133. Rosetta 2000: Expression in cin5 deletion mutant (1) 252 repressed 0.007 0.0972904219566841 -0.000681032953696789 134. Rosetta 2000: Expression in cka2 deletion mutant (1) 253 repressed -0.086 0.1023356982823 0.0088008700522778 137. Rosetta 2000: Expression in clb2 deletion mutant (1) 256 repressed -0.083 0.108615104555639 0.00901505367811804 141. Rosetta 2000: Expression in cnb1 deletion mutant (1) 260 induced 0.017 0.0964539768483943 0.0016397176064227 147. Rosetta 2000: Expression in dig1 deletion mutant (1) 266 repressed -0.133 0.110604929051531 0.0147104555638536 148. Rosetta 2000: Expression in dig1, dig2 deletion mutant (1) 267 induced -0.06 0.100659540702016 -0.00603957244212096 151. Rosetta 2000: Expression in dot4 deletion mutant (1) 270 repressed 0.11 0.0984984129947722 -0.0108348254294249 162. Rosetta 2000: Expression in erg3 (haploid) deletion mutant (1) 281 bimodal -0.508 0.16088358849888 -0.081728862957431 163. Rosetta 2000: Expression in erg4 (haploid **7) deletion mutant (1) 282 repressed 0.249 0.111564600448096 -0.0277795855115759 164. Rosetta 2000: Expression in erg5 deletion mutant (1) 283 repressed -0.02 0.11028146004481 0.0022056292008962 168. Rosetta 2000: Expression in far1 (haploid) deletion mutant (1) 287 induced -0.106 0.096512789395071 -0.0102303556758775 169. Rosetta 2000: Expression in fks1 (haploid) deletion mutant (1) 288 induced -0.133 0.101860530246453 -0.0135474505227783 173. Rosetta 2000: Expression in fus3 (haploid) deletion mutant (1) 292 repressed -0.16 0.138763536221061 0.0222021657953698 175. Rosetta 2000: Expression in gal83 deletion mutant (1) 294 induced 0.173 0.0997376773711725 0.0172546181852128 176. Rosetta 2000: Expression in gas1 deletion mutant (1) 295 repressed -0.259 0.102222740851382 0.0264756898805079 179. Rosetta 2000: Expression in gln3 deletion mutant (1) 298 induced 0.036 0.133236090365945 0.00479649925317402 183. Rosetta 2000: Expression in hda1 deletion mutant (1) 302 induced -0.007 0.0986123039581777 -0.000690286127707244 196. Rosetta 2000: Expression in isw1, isw2 deletion mutant (1) 315 induced -0.083 0.102577483196415 -0.00851393110530245 197. Rosetta 2000: Expression in isw2 deletion mutant (1) 316 repressed -0.06 0.0984255974607916 0.0059055358476475 200. Rosetta 2000: Expression in kin3 deletion mutant (1) 319 induced 0.027 0.117094380134429 0.00316154826362958 201. Rosetta 2000: Expression in kre1 deletion mutant (1) 320 induced -0.189 0.110039208364451 -0.0207974103808812 206. Rosetta 2000: Expression in mbp1 deletion mutant (1) 325 induced 0.036 0.129706870799104 0.00466944734876774 207. Rosetta 2000: Expression in med2 (haploid) deletion mutant (1) 326 repressed -0.239 0.102074775952203 0.0243958714525765 215. Rosetta 2000: Expression in ost3 deletion mutant (1) 334 repressed -0.173 0.0959316654219567 0.0165961781179985 220. Rosetta 2000: Expression in pep12 deletion mutant (1) 339 induced -0.07 0.105449029126214 -0.00738143203883498 222. Rosetta 2000: Expression in pet117 deletion mutant (1) 341 repressed -0.013 0.0991481516056759 0.00128892597087379 229. Rosetta 2000: Expression in qcr2 (haploid) deletion mutant (1) 348 bimodal 0.076 0.111276605675878 0.00845702203136673 237. Rosetta 2000: Expression in rip1 deletion mutant (1) 356 repressed -0.01 0.10665141896938 0.0010665141896938 238. Rosetta 2000: Expression in rml2 (**13) deletion mutant (1) 357 repressed 0.163 0.116860063480209 -0.0190481903472741 242. Rosetta 2000: Expression in rpl12a deletion mutant (1) 361 repressed 0.336 0.105554051530993 -0.0354661613144137 245. Rosetta 2000: Expression in rpl34a (**9) deletion mutant (1) 364 repressed 0.027 0.128525485436893 -0.00347018810679611 248. Rosetta 2000: Expression in rps24a (**9) deletion mutant (1) 367 repressed 0.266 0.113210418222554 -0.0301139712471994 272. Rosetta 2000: Expression in sst2 (haploid) deletion mutant (1) 391 repressed -0.206 0.10028146004481 0.0206579807692309 273. Rosetta 2000: Expression in stb4 deletion mutant (1) 392 induced -0.11 0.100807505601195 -0.0110888256161315 276. Rosetta 2000: Expression in ste18 (haploid) deletion mutant (1) 395 repressed -0.003 0.113931105302465 0.000341793315907395 279. Rosetta 2000: Expression in ste24 (haploid) deletion mutant (1) 398 repressed -0.136 0.110505041075429 0.0150286855862583 285. Rosetta 2000: Expression in swi6 (haploid) deletion mutant (1) 404 induced -0.239 0.117618091859597 -0.0281107239544437 290. Rosetta 2000: Expression in tup1 (haploid) deletion mutant (1) 409 induced 0.425 0.110362210604929 0.0469039395070948 292. Rosetta 2000: Expression in ubr1 deletion mutant (1) 411 repressed 0.05 0.0992531740104556 -0.00496265870052278 293. Rosetta 2000: Expression in ubr2 deletion mutant (1) 412 repressed 0.309 0.10147498132935 -0.0313557692307691 304. Rosetta 2000: Expression in yap7 deletion mutant (1) 423 induced 0.053 0.10266570201643 0.00544128220687079 313. Rosetta 2000: Expression in yel033w deletion mutant (1) 432 repressed 0.256 0.104702669902913 -0.0268038834951457 324. Rosetta 2000: Expression in yer044c (haploid) deletion mutant (1) 443 repressed -0.345 0.109542102315161 0.0377920252987305 325. Rosetta 2000: Expression in yer050c deletion mutant (1) 444 repressed -0.046 0.100151699029126 0.0046069781553398 329. Rosetta 2000: Expression in yer083c deletion mutant (1) 448 repressed -0.259 0.141035287528006 0.0365281394697536 336. Rosetta 2000: Expression in yhl045w deletion mutant (1) 455 repressed 0.083 0.105458364451083 -0.00875304424943989 337. Rosetta 2000: Expression in yhr011w (**14) deletion mutant (1) 456 repressed -0.11 0.124175224047797 0.0136592746452577 338. Rosetta 2000: Expression in yhr022c deletion mutant (1) 457 induced 0.053 0.103916168782674 0.00550755694548172 342. Rosetta 2000: Expression in yil037c (haploid) deletion mutant (1) 461 induced -0.007 0.118209951456311 -0.000827469660194177 344. Rosetta 2000: Expression in yjl107c (haploid) deletion mutant (1) 463 repressed 0.176 0.100711818521285 -0.0177252800597462 353. Rosetta 2000: Expression in ymr014w deletion mutant (1) 472 repressed 0.04 0.102998506348021 -0.00411994025392084 355. Rosetta 2000: Expression in ymr029c deletion mutant (1) 474 repressed -0.203 0.103488144137416 0.0210080932598955 364. Rosetta 2000: Expression in ymr141c deletion mutant (1) 483 repressed 0.166 0.102718913368185 -0.0170513396191187 377. Rosetta 2000: Expression in yor015w deletion mutant (1) 496 repressed 0.013 0.0969856235997013 -0.00126081310679612 381. Rosetta 2000: Expression in yor078w deletion mutant (1) 500 repressed 0.066 0.09961071695295 -0.0065743073188947 382. Rosetta 2000: Expression in yor080w (**3) deletion mutant (1) 501 induced -0.312 0.0979368932038835 -0.0305563106796117 386. Rosetta 2000: Expression in cells with CDC42 under tet promoter(1) 505 induced 0.113 0.102527539208364 0.0115856119305451 387. Rosetta 2000: Expression in cells with ERG11 under tet promoter(1) 506 bimodal -0.262 0.139277445855116 -0.0364906908140404 388. Rosetta 2000: Expression in cells with FKS1 under tet promoter(1) 507 induced -0.03 0.101366691560866 -0.00304100074682598 389. Rosetta 2000: Expression in cells with HMG2 under tet promoter(1) 508 bimodal -0.246 0.114375933532487 -0.0281364796489918 393. Rosetta 2000: Expression in cells with RHO1 under tet promoter(1) 512 induced -0.1 0.0981235997012696 -0.00981235997012696 395. Rosetta 2000: Expression in response to 2-deoxy-D-glucose(1) 514 induced -0.027 0.0976699029126214 -0.00263708737864078 399. Rosetta 2000: Expression in response to FR901,228(1) 518 repressed 0.076 0.0965183905899925 -0.00733539768483943 402. Rosetta 2000: Expression in response to Itraconazole(1) 521 repressed -0.428 0.14783000373413 0.0632712415982076 403. Rosetta 2000: Expression in response to Lovastatin(1) 522 induced -0.289 0.109559372666169 -0.0316626587005228 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(2) 528 induced -0.18 0.122462658700523 -0.0220432785660941 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(3) 529 induced -0.06 0.123963312173264 -0.00743779873039584 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(4) 530 repressed -0.08 0.0979382935026139 0.00783506348020911 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(5) 531 repressed 0.19 0.101669156086632 -0.0193171396564601 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(6) 532 repressed 0.26 0.122543409260642 -0.0318612864077669 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(7) 533 repressed 0.11 0.14134428678118 -0.0155478715459298 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(9) 535 induced -0.12 0.113278099327857 -0.0135933719193428 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(11) 537 induced 0.16 0.130720220313667 0.0209152352501867 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(12) 538 induced 0.24 0.098562359970127 0.0236549663928305 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(1) 540 bimodal -0.36 0.109134615384615 -0.0392884615384614 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(3) 542 induced -0.19 0.12323282300224 -0.0234142363704256 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(11) 550 induced 0.01 0.0983621172516804 0.000983621172516804 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(13) 552 repressed -0.05 0.109945855115758 0.0054972927557879 pho80 vs WT(1) 581 induced -0.184 0.107444454817028 -0.0197697796863332 PHO81c vs WT exp2(1) 584 induced -0.6 0.109637789395071 -0.0657826736370426 449. Expression in response to 0.1% MMS for 60 min(1) 606 repressed 0 0.10810212845407 0 461. Expression of rpn4 deletion in response to 0.1% MMS for 60 min(1) 618 repressed 0 0.101021751306945 0 469. Expression in hda1 deletion(1) 626 induced -0.065 0.0978440067214339 -0.0063598604368932 474. Expression in hda1 deletion(1) 631 induced -0.62 0.100964805825243 -0.0625981796116507 475. Expression in hos2 deletion(1) 632 bimodal -0.379 0.100149365197909 -0.0379566094100075 476. Expression in hos3 deletion(1) 633 induced -0.23 0.0957612957430919 -0.0220250980209111 478. Expression in haploid cells in response to rapamycin (100nM) for: 0min,15min,30min,60min,120min(4) 641 repressed -1.804 0.107099047796863 0.193206682225541 479. Expression in diploid cells in response to rapamycin (100nM) for: 15min,30min,90min,120min(4) 646 repressed 1.061 0.10682645631068 -0.113342870145631 480. Expression in haploid cells deprived to amino acids in response to rapamycin for: 15min,30min,60min,90min,120min(3) 649 repressed 1.048 0.0984923450336072 -0.10321997759522 481. Expression in response to heat shock: 15,30,45,60,120 min(1) 652 repressed 0 0.0969338125466766 0 481. Expression in response to heat shock: 15,30,45,60,120 min(2) 653 repressed 0 0.102763256161314 0 486. Expression in response to NaCl: 15 30 45 60 120 min(2) 677 repressed -0.245 0.101235997012696 0.0248028192681105 486. Expression in response to NaCl: 15 30 45 60 120 min(3) 678 repressed 0.606 0.105126026885736 -0.063706372292756 488. Brown enviromental changes :Heat Shock 05 minutes hs-1(1) 686 induced -0.54 0.10817354368932 -0.0584137135922328 492. Brown enviromental changes :Heat Shock 30 minutes hs-1(1) 690 repressed -0.66 0.105295929798357 0.0694953136669156 502. Brown enviromental changes :Heat Shock 060 minutes hs-2(1) 700 induced 0.09 0.098628640776699 0.00887657766990291 507. Brown enviromental changes :37C to 25C shock - 90 min(1) 705 induced -0.03 0.10390496639283 -0.0031171489917849 519. Brown enviromental changes :29C +1M sorbitol to 33C + 1M sorbitol - 30 minutes(1) 717 repressed -0.09 0.0979550970873786 0.00881595873786407 560. Brown enviromental changes :1.5 mM diamide (30 min)(1) 758 repressed -0.87 0.0998478342046303 0.0868676157580284 567. Brown enviromental changes :1M sorbitol - 30 min(1) 765 repressed -0.21 0.132954163554892 0.0279203743465273 570. Brown enviromental changes :1M sorbitol - 90 min(1) 768 induced -0.33 0.111955283793876 -0.0369452436519791 585. Brown enviromental changes :Nitrogen Depletion 2 h(1) 783 repressed 0.33 0.107124719940254 -0.0353511575802838 586. Brown enviromental changes :Nitrogen Depletion 4 h(1) 784 repressed 0.33 0.0990062546676624 -0.0326720640403286 587. Brown enviromental changes :Nitrogen Depletion 8 h(1) 785 repressed 0.17 0.125093820014937 -0.0212659494025393 588. Brown enviromental changes :Nitrogen Depletion 12 h(1) 786 repressed 0.08 0.141896938013443 -0.0113517550410754 590. Brown enviromental changes :Nitrogen Depletion 2 d(1) 788 repressed 0.41 0.0969916915608663 -0.0397665935399552 591. Brown enviromental changes :Nitrogen Depletion 3 d(1) 789 repressed 0.35 0.0965772031366692 -0.0338020210978342 592. Brown enviromental changes :Nitrogen Depletion 5 d(1) 790 repressed 0.67 0.0999747946228529 -0.0669831123973114 611. Brown enviromental changes :YPD stationary phase 2 h ypd-1(1) 802 induced -0.33 0.0963839619118745 -0.0318067074309186 616. Brown enviromental changes :YPD stationary phase 2 d ypd-1(1) 807 repressed -0.42 0.099167289021658 0.0416502613890964 617. Brown enviromental changes :YPD stationary phase 3 d ypd-1(1) 808 repressed -0.46 0.116464245705751 0.0535735530246455 623. Brown enviromental changes :DBY7286 37degree heat - 20 min(1) 814 repressed -0.3 0.101856329350261 0.0305568988050783 624. Brown enviromental changes :DBYmsn2-4- 37degree heat - 20 min(1) 815 repressed -0.11 0.117162528005975 0.0128878780806573 625. Brown enviromental changes :DBYmsn2/4 (real strain) + 37degrees (20 min)(1) 816 repressed -0.02 0.107018764002987 0.00214037528005974 626. Brown enviromental changes :DBYyap1- 37degree heat - 20 min (redo)(1) 817 repressed -0.42 0.123927371172517 0.0520494958924571 627. Brown enviromental changes :DBYyap1 + 37degree heat (repeat)(1) 818 repressed 0.21 0.162517270351008 -0.0341286267737117 629. Brown enviromental changes :DBYmsn2msn4 (good strain) + 0.32 mM H2O2(1) 820 repressed -0.43 0.0974556572068708 0.0419059325989544 (Rich Media 2% Glucose YPD-185769) wt 5mM aF, 30 min. 876 repressed 0.02 0.141630414488424 -0.00283260828976848 Rich Media 2% Glucose YPD-Average wt 5mM aF, 30 min. 877 repressed 0.19 0.140716952949963 -0.026736221060493 Rich Media 2% Glucose YPD-Average fus3 5mM aF, 30 min. 881 repressed -0.05 0.10461071695295 0.0052305358476475 (Rich Media 2% Glucose YPD-185009) kss1 5mM aF, 30 min. 883 repressed 0.38 0.146010548917102 -0.0554840085884988 Rich Media 2% Glucose YPD-Average kss1 5mM aF, 30 min. 885 repressed 0.11 0.129873039581777 -0.0142860343539955 ( trp- 2% Glucose-203686) fus3 (+Vector) 5mM aF, 30 min. 896 repressed -0.32 0.0993693988050784 0.0317982076176251 ( trp- 2% Glucose-203792) fus3 (+Fus3K42R) 5mM aF, 30 min. 899 repressed 0.06 0.101748039581777 -0.00610488237490662 trp- 2% Glucose-Average fus3 (+Fus3K42R) 5mM aF, 30 min. 901 repressed -0.01 0.0968633308439134 0.000968633308439134 ( trp- 2% Glucose-228688) wt 5mM aF, 30 min. 907 repressed 0.32 0.14356282673637 -0.0459401045556384 ( trp- 2% Glucose-228721) wt 5mM aF, 30 min. 908 repressed -0.28 0.166892737117252 0.0467299663928306 trp- 2% Glucose-Average wt 5mM aF, 30 min. 909 repressed 0.02 0.178625840179238 -0.00357251680358476 Addition of 1M NaCl (90) 917 repressed -0.83 0.11008355115758 0.0913693474607914 DES459 (mec1-) + 0.02% MMS - 15 min 927 repressed -0.083 0.100660941000747 0.008354858103062 DES459 (mec1-) + 0.02% MMS - 30 min 928 repressed -0.2 0.0996172516803585 0.0199234503360717 DES459 (mec1-) + 0.02% MMS - 90 min 931 repressed -0.24 0.116656553398058 0.0279975728155339 dun1- + 0.02% MMS - 90 min 934 repressed -0.53 0.0961841859596714 0.0509776185586258 wt_plus_gamma_20_min 938 repressed -0.16 0.106454910380881 0.017032785660941 wt_plus_gamma_30_min 939 repressed -0.07 0.141528659447349 0.00990700616131443 wt_plus_gamma_45_min 940 repressed -0.22 0.111439040328603 0.0245165888722927 wt_plus_gamma_60_min 941 repressed -0.11 0.118982916355489 0.0130881207991038 mec1_plus_gamma_20_min 950 repressed -0.45 0.10954070201643 0.0492933159073935 mec1_plus_gamma_30_min 951 repressed -0.11 0.112247946228529 0.0123472740851382 mec1_plus_gamma_45_min 952 repressed -0.38 0.156001680358476 0.0592806385362209 mec1_plus_gamma_60_min 953 repressed 0.1 0.10097787528006 -0.010097787528006 mec1_plus_gamma_90_min 954 repressed -0.2 0.104462285287528 0.0208924570575056 DES459 (mec1) - mock irradiation - 5 min 956 induced 0.35 0.095974141150112 0.0335909494025392 DES460 (wild type) + heat 20 min 960 repressed -0.14 0.0996648618371919 0.0139530806572069 MHY1 (dun1) + heat 20 min 962 repressed -0.84 0.103508215085885 0.0869469006721434 DES459 (mec1) - log phase (IR time = 0 sample) 964 repressed -0.01 0.105236183719193 0.00105236183719193 100 microM CuSO4 30 min (B) 970 induced -0.12 0.0963414861837192 -0.0115609783420463 gal1+gal 975 repressed 0.535 0.115098020911128 -0.0615774411874535 gal3+gal 977 repressed 0.226 0.0998426997759522 -0.0225644501493652 gal7+gal 981 repressed -0.173 0.0972610156833458 0.0168261557132188 gal5-gal 988 repressed 0.678 0.100547983569828 -0.0681715328603434 gal6-gal 989 repressed 0.08 0.129129947722181 -0.0103303958177745 gal7-gal 990 repressed 0.143 0.112156926811053 -0.0160384405339806 gal80-gal 992 repressed 0.558 0.116473114264376 -0.0649919977595218 gal1gal10+gal 993 repressed -0.027 0.103847087378641 0.00280387135922331 BY4741 GAL t=30min vs. t=0 (YT00261) 996 repressed 0 0.114063666915609 0 BY4741 GAL t=60min vs. t=0 (YT00259) 997 induced 0 0.103845220313667 0 sfp1::GALSFP1 t=20min GAL vs. t=0 RAFF (YT00234) 1002 repressed -0.07 0.113883961911875 0.00797187733383125 YBL020W 1013 induced -0.13628 0.11154359596714 -0.0152011612584018 YBR196C 1024 induced -0.20331 0.095679144884242 -0.0194525269464152 YER023W 1049 induced -0.009602 0.102354835698282 -0.000982811132374904 YGR094W 1059 repressed -0.056995 0.0969538834951456 0.00552588658980582 YHR188C 1070 induced -0.04845 0.1075 -0.005208375 YJR007W 1086 repressed -0.094822 0.108476008215086 0.0102859120509709 YJR076C 1087 induced 0.1171 0.0983989917849141 0.0115225219380134 YKL125W 1091 repressed 0.033235 0.104766150112024 -0.00348190299897312 YLR060W 1100 repressed -0.079561 0.120408420463032 0.00957981434045929 YLR359W 1112 induced -0.0158 0.104507561613144 -0.00165121947348768 YMR239C 1128 induced -0.33841 0.100869118745332 -0.0341351184746078 YNL158W 1133 induced -0.043636 0.12754574309186 -0.0055655860455564 YNR043W 1139 induced 0.065845 0.10167289021658 0.00669465145631071 YOR145C 1151 repressed 0.036205 0.103513816280807 -0.00374771771844662 YOR335C 1164 induced 0.13575 0.0976330283793876 0.0132536836025019 YPL010W 1166 induced 0.048429 0.0954508961911874 0.00462259145164302 YPL076W 1168 induced -0.007489 0.104361930545183 -0.000781566497852875 YDR365C 1185 repressed 0.094696 0.103215085884989 -0.00977405577296492 YFR037C 1190 induced -0.0069314 0.0975079350261389 -0.000675866500840179 YLR229C 1211 induced -0.0087724 0.100101288274832 -0.000878128541262136 CUP2OE+ 1229 repressed -0.0707885 0.108019510828977 0.00764653914231704 GAT4OE+ 1232 induced 0.1041515 0.128922703510082 0.0134274929546303 GIS1OE+ 1234 induced 0.066337 0.10457710978342 0.00693733173170273 HAC1OE+ 1237 repressed 0.09335 0.123124533233757 -0.0114936751773712 HAP4OE+ 1238 repressed -0.133915 0.131729368932039 0.017640538440534 MBP1OE+ 1242 repressed -0.0730365 0.100161967886482 0.00731547956754104 MET4OE+ 1244 repressed 0.071468 0.157647031366692 -0.0112667180377147 MGA1OE+ 1245 induced NaN 0.0981016616878267 0 MOT3OE+ 1247 induced 0.134414 0.115631067961165 0.015542434368932 ROX1OE+ 1256 repressed -0.0955505 0.0994524831964152 0.00950273449565907 SOK2OE+ 1261 repressed 0.0600115 0.128619772218073 -0.00771866546046489 SWI4OE+ 1268 induced 0.047596 0.15771144510829 0.00750643394137417 XBP1OE+ 1271 repressed 0.006308 0.106743371919343 -0.000673337190067216 YAP1OE+ 1272 repressed -0.050484 0.10771284540702 0.005437775287528 YOX1OE+ 1274 induced -0.112445 0.108234223300971 -0.0121703972390777 WT/cst6+ 1282 induced 0.113336 0.108471340552651 0.0122937078528753