Input Cluster (n=200) YAL001C TFC3 YAL017W PSK1 YAL018C YBL031W SHE1 YBL052C SAS3 YBL063W KIP1 YBL098W BNA4 YBR029C CDS1 YBR030W YBR040W FIG1 YBR082C UBC4 YBR112C CYC8 YBR249C ARO4 YBR250W YCL014W BUD3 YCL016C DCC1 YCL027W FUS1 YCL068C YCL073C YCR004C YCP4 YCR021C HSP30 YCR042C TAF2 YCR075C ERS1 YCR084C TUP1 YCR086W CSM1 YCR090C YDL028C MPS1 YDL055C PSA1 YDL139C SCM3 YDL215C GDH2 YDL240W LRG1 YDR001C NTH1 YDR002W YRB1 YDR033W MRH1 YDR035W ARO3 YDR038C ENA5 YDR039C ENA2 YDR113C PDS1 YDR115W YDR146C SWI5 YDR161W TCI1 YDR216W ADR1 YDR222W YDR225W HTA1 YDR247W YDR263C DIN7 YDR292C SRP101 YDR312W SSF2 YDR322W MRPL35 YDR335W MSN5 YDR367W YDR403W DIT1 YDR451C YHP1 YDR452W PPN1 YDR464W SPP41 YDR479C YDR480W DIG2 YEL001C YEL007W YEL009C GCN4 YEL027W CUP5 YEL061C CIN8 YEL070W YER103W SSA4 YER114C BOI2 YER124C DSE1 YER159C BUR6 YFL058W THI5 YFR011C YFR012W YGL001C ERG26 YGL008C PMA1 YGL021W ALK1 YGL028C SCW11 YGL133W ITC1 YGL139W YGL184C STR3 YGR041W BUD9 YGR070W ROM1 YGR111W YGR138C TPO2 YGR163W GTR2 YGR195W SKI6 YGR240C PFK1 YGR263C YHL015W RPS20 YHL022C SPO11 YHL024W RIM4 YHL028W WSC4 YHL033C RPL8A YHR001W OSH7 YHR002W LEU5 YHR052W CIC1 YHR061C GIC1 YHR085W IPI1 YHR103W SBE22 YHR123W EPT1 YHR129C ARP1 YHR138C YHR172W SPC97 YIL124W AYR1 YIL147C SLN1 YIR007W YIR042C YJL038C YJL062W LAS21 YJL118W YJL121C RPE1 YJR001W YJR076C CDC11 YJR094C IME1 YJR122W CAF17 YJR138W IML1 YJR145C RPS4A YKL007W CAP1 YKL008C LAC1 YKL069W YKL096W CWP1 YKL108W SLD2 YKL121W YKL140W TGL1 YKL149C DBR1 YKL160W YKR009C FOX2 YKR096W YKR099W BAS1 YKR106W YLL029W YLL032C YLL042C APG10 YLR042C YLR083C EMP70 YLR206W ENT2 YLR272C YCS4 YLR286C CTS1 YLR293C GSP1 YLR300W EXG1 YLR372W SUR4 YLR446W YLR455W YML019W OST6 YML092C PRE8 YML118W NGL3 YMR003W YMR132C YMR133W REC114 YMR144W YMR177W MMT1 YMR187C YMR197C VTI1 YMR198W CIK1 YMR204C YMR215W GAS3 YMR256C COX7 YMR257C PET111 YMR307W GAS1 YNL093W YPT53 YNL122C YNL126W SPC98 YNL190W YNL191W YNL332W THI12 YNR001C CIT1 YNR009W YNR018W YOL023W IFM1 YOL088C MPD2 YOL123W HRP1 YOL128C YGK3 YOL132W GAS4 YOR030W DFG16 YOR058C ASE1 YOR073W YOR081C YOR083W WHI5 YOR177C MPC54 YOR178C GAC1 YOR233W KIN4 YOR242C SSP2 YOR312C RPL20B YOR315W YOR356W YOR372C NDD1 YOR373W NUD1 YOR389W YPL016W SWI1 YPL017C YPL032C SVL3 YPL034W YPL116W HOS3 YPL117C IDI1 YPL128C TBF1 YPL140C MKK2 YPL181W RXT1 YPL216W YPL217C BMS1 YPL250C ICY2 YPL253C VIK1 YPR001W CIT3 YPR171W Genes Not Found: MIPS Functional Classification Category p-value In Category from Cluster k f cell differentiation 9.37756e-06 SAS3 FIG1 UBC4 BUD3 FUS1 CSM1 LRG1 SWI5 SSF2 MSN5 DIT1 DIG2 BOI2 BUD9 ROM1 RIM4 GIC1 SBE22 AYR1 CDC11 IME1 CAP1 DBR1 EXG1 SUR4 DFG16 SWI1 SVL3 MKK2 29 382 fungal cell differentiation 9.37756e-06 SAS3 FIG1 UBC4 BUD3 FUS1 CSM1 LRG1 SWI5 SSF2 MSN5 DIT1 DIG2 BOI2 BUD9 ROM1 RIM4 GIC1 SBE22 AYR1 CDC11 IME1 CAP1 DBR1 EXG1 SUR4 DFG16 SWI1 SVL3 MKK2 29 382 CELL FATE 2.9517e-05 SAS3 FIG1 UBC4 BUD3 FUS1 CSM1 LRG1 SWI5 SSF2 MSN5 DIT1 DIG2 BOI2 BUD9 ROM1 RIM4 GIC1 SBE22 AYR1 CDC11 IME1 CAP1 LAC1 DBR1 EXG1 SUR4 DFG16 SWI1 SVL3 MKK2 30 427 pheromone response, mating-type determination, sex-specific proteins 0.00170709 SAS3 FIG1 UBC4 FUS1 SWI5 SSF2 MSN5 DIG2 GIC1 CDC11 CAP1 EXG1 SWI1 13 160 centrosome 0.00271949 SPC97 CIK1 SPC98 MPC54 NUD1 5 31 budding, cell polarity and filament formation 0.00292659 BUD3 BOI2 BUD9 ROM1 GIC1 SBE22 CDC11 CAP1 DBR1 SUR4 DFG16 SVL3 MKK2 13 170 MIPS Phenotypes Category p-value In Category from Cluster k f Spindle mutants 0.00119827 MPS1 ARP1 SPC97 SPC98 ASE1 5 26 MIPS Subcellular Localization Category p-value In Category from Cluster k f cytoskeleton 0.00103586 KIP1 BUD3 CIN8 SPC97 CDC11 CAP1 CIK1 SPC98 ASE1 MPC54 NUD1 11 115 MIPS Protein Complexes Category p-value In Category from Cluster k f Microtubules 0.000443623 KIP1 CIN8 ARP1 CIK1 SPC98 ASE1 6 32 Tubulin-associated motorproteins 0.000783414 KIP1 CIN8 ARP1 CIK1 4 14 Tup1/Ssn6 complex 0.00101352 CYC8 TUP1 2 2 Kinesin-related motorproteins 0.00159254 KIP1 CIN8 CIK1 3 8 Cytoskeleton 0.00212059 KIP1 CIN8 ARP1 CDC11 CAP1 CIK1 SPC98 ASE1 8 73 gamma-tubulin complex 0.0029765 SPC97 SPC98 2 3 Spindle pole body (SPB) 0.00314095 ARP1 SPC97 CIK1 SPC98 NUD1 5 32 MIPS Protein Classes Category p-value In Category from Cluster k f GO Molecular Function Category p-value In Category from Cluster k f microtubule binding [GO:0008017] 4.98453e-05 KIP1 CIN8 CIK1 ASE1 VIK1 5 14 microtubule motor [GO:0003777] 6.37246e-05 KIP1 CIN8 CIK1 VIK1 4 8 tubulin binding [GO:0015631] 0.000330073 KIP1 CIN8 CIK1 ASE1 VIK1 5 20 2-dehydro-3-deoxyphosphoheptonate aldolase [GO:0003849] 0.00101352 ARO4 ARO3 2 2 general transcriptional repressor [GO:0016565] 0.00101352 CYC8 TUP1 2 2 motor [GO:0003774] 0.00172766 KIP1 CIN8 CIK1 VIK1 4 17 cytoskeletal protein binding [GO:0008092] 0.00207275 KIP1 CIN8 CAP1 ENT2 CIK1 ASE1 VIK1 7 57 citrate (SI)-synthase [GO:0004108] 0.0029765 CIT1 CIT3 2 3 structural constituent of cytoskeleton [GO:0005200] 0.00436537 KIP1 ARP1 SPC97 CDC11 SPC98 NUD1 6 49 GO Biological Process Category p-value In Category from Cluster k f mitotic anaphase B [GO:0000092] 6.37246e-05 KIP1 CIN8 ARP1 ASE1 4 8 M phase [GO:0000279] 0.000929311 KIP1 BUD3 MPS1 PDS1 YHP1 CIN8 SCW11 SPO11 RIM4 ARP1 CDC11 IME1 YCS4 CTS1 REC114 CIK1 SPC98 ASE1 GAC1 19 270 mitotic anaphase [GO:0000090] 0.000996582 KIP1 CIN8 ARP1 YCS4 CIK1 ASE1 6 37 cytoskeleton organization and biogenesis [GO:0007010] 0.00116364 KIP1 BUD3 MPS1 CIN8 BOI2 BUD9 ROM1 GIC1 SPC97 CDC11 CAP1 ENT2 CIK1 SPC98 ASE1 NUD1 VIK1 17 233 negative regulation of transcription [GO:0016481] 0.0013264 CYC8 TUP1 YHP1 SPP41 BUR6 GAC1 6 39 microtubule-based process [GO:0007017] 0.00200172 KIP1 MPS1 CIN8 SPC97 CIK1 SPC98 ASE1 NUD1 VIK1 9 89 nuclear division [GO:0000280] 0.00290622 KIP1 MPS1 PDS1 YHP1 CIN8 SPO11 RIM4 ARP1 IME1 YCS4 REC114 CIK1 SPC98 ASE1 GAC1 15 211 sodium transport [GO:0006814] 0.0029765 ENA5 ENA2 2 3 microtubule cytoskeleton organization and biogenesis [GO:0000226] 0.00378224 KIP1 MPS1 CIN8 SPC97 CIK1 SPC98 ASE1 NUD1 8 80 mitosis [GO:0007067] 0.00400314 KIP1 MPS1 PDS1 CIN8 ARP1 YCS4 CIK1 SPC98 ASE1 GAC1 10 117 M phase of mitotic cell cycle [GO:0000087] 0.0045195 KIP1 MPS1 PDS1 CIN8 ARP1 YCS4 CIK1 SPC98 ASE1 GAC1 10 119 GO Cellular Component Category p-value In Category from Cluster k f microtubule cytoskeleton [GO:0015630] 2.66684e-06 KIP1 MPS1 PDS1 CIN8 ARP1 SPC97 CIK1 SPC98 ASE1 MPC54 NUD1 VIK1 12 73 spindle [GO:0005819] 2.74381e-06 KIP1 MPS1 PDS1 CIN8 SPC97 CIK1 SPC98 ASE1 MPC54 NUD1 VIK1 11 61 kinesin [GO:0005871] 1.43638e-05 KIP1 CIN8 CIK1 VIK1 4 6 cytoskeleton [GO:0005856] 2.99563e-05 KIP1 BUD3 MPS1 PDS1 CIN8 GIC1 ARP1 SPC97 CDC11 CAP1 ENT2 CIK1 SPC98 ASE1 MPC54 NUD1 VIK1 17 172 microtubule organizing center [GO:0005815] 6.16862e-05 KIP1 MPS1 SPC97 CIK1 SPC98 MPC54 NUD1 VIK1 8 44 spindle pole body [GO:0005816] 6.16862e-05 KIP1 MPS1 SPC97 CIK1 SPC98 MPC54 NUD1 VIK1 8 44 microtubule associated protein [GO:0005875] 6.37246e-05 KIP1 CIN8 CIK1 VIK1 4 8 cell wall (sensu Fungi) [GO:0009277] 9.41178e-05 FIG1 CDC11 CWP1 YLR042C CTS1 EXG1 GAS3 YNL190W GAS4 SSP2 10 73 spindle pole [GO:0030615] 0.000117707 KIP1 MPS1 SPC97 CIK1 SPC98 MPC54 NUD1 VIK1 8 48 external protective structure [GO:0030312] 0.000148408 FIG1 SCW11 CDC11 CWP1 YLR042C CTS1 EXG1 GAS3 YNL190W GAS4 SSP2 11 92 cell wall [GO:0005618] 0.000148408 FIG1 SCW11 CDC11 CWP1 YLR042C CTS1 EXG1 GAS3 YNL190W GAS4 SSP2 11 92 extracellular [GO:0005576] 0.00030825 FIG1 CDC11 CWP1 YLR042C CTS1 EXG1 GAS3 YNL190W GAS4 SSP2 10 84 spindle microtubule [GO:0005876] 0.00325479 KIP1 CIN8 ASE1 3 10 microtubule [GO:0005874] 0.00326287 KIP1 CIN8 CIK1 ASE1 4 20 SMART Domains Category p-value In Category from Cluster k f DDT 0.00101352 ITC1 YPL216W 2 2 PFam-A Domains Category p-value In Category from Cluster k f PF03198 (GAS1) 0.000305393 GAS3 GAS1 GAS4 3 5 PF00793 (DAHP_synth_1) 0.00101352 ARO4 ARO3 2 2 PF02791 (DDT) 0.00101352 ITC1 YPL216W 2 2 PF00690 (Cation_ATPase_N) 0.00101923 ENA5 ENA2 PMA1 3 7 PF01036 (Bac_rhodopsin) 0.0029765 HSP30 MRH1 2 3 PF00285 (citrate_synt) 0.0029765 CIT1 CIT3 2 3 Yeast Two Hybrid - Uetz Category p-value In Category from Cluster k f Yeast Two Hybrid - Ito (core) Category p-value In Category from Cluster k f Yeast Two Hybrid - Ito (full) Category p-value In Category from Cluster k f Synthetic Genetic Array Analysis Category p-value In Category from Cluster k f MDS Proteomics Complexes Category p-value In Category from Cluster k f YER177W (BMH1) 0.000783414 NTH1 ADR1 BOI2 SVL3 4 14 YBR017C (KAP104) 0.0046866 YRB1 ADR1 AYR1 GSP1 HRP1 5 35 Cellzome Complexes Category p-value In Category from Cluster k f YLR212C (TUB4) 0.000125104 PFK1 SPC97 SPC98 3 4 Proteome Localization--Observed Category p-value In Category from Cluster k f Proteome Localization--Predicted+Observed Category p-value In Category from Cluster k f Deletions Consortium (Essentiality, Morphology) Category p-value In Category from Cluster k f Yeast Fitness Data Category p-value In Category from Cluster k f Published Complexes Category p-value In Category from Cluster k f