Mcm1-avgv9v11-0.35bgdsub_lteq600.txt_200 Significant Conditions: condindex ind/rep TFexpr area activator/repressor 1. Cell cycle: Expression in response to Cln3p (set 1)(1) 2 repressed 0.42 0.10644930918596 -0.0447087098581032 0.00460335755711102 2. Cell Cycle: Expression in response to Cln3p (set 2)(1) 3 repressed 0.03 0.138319641523525 -0.00414958924570575 3. Cell Cycle: Expression in response to Clb2p (set 1, 40 min)(1) 4 induced -0.32 0.213169809559373 -0.0682143390589994 4. Cell Cycle: Expression in response to Clb2p (set 2, 30 min)(1) 5 induced 0.33 0.203027912621359 0.0669992111650485 5. Expression during the cell cycle (alpha factor arrest and release)(1) 6 induced -0.27 0.111104368932039 -0.0299981796116505 5. Expression during the cell cycle (alpha factor arrest and release)(2) 7 induced 0.74 0.0980204443614638 0.0725351288274832 5. Expression during the cell cycle (alpha factor arrest and release)(3) 8 induced -0.49 0.130344473487677 -0.0638687920089617 5. Expression during the cell cycle (alpha factor arrest and release)(4) 9 repressed 0 0.108789675130695 0 5. Expression during the cell cycle (alpha factor arrest and release)(5) 10 repressed -0.36 0.13330143764003 0.0479885175504108 5. Expression during the cell cycle (alpha factor arrest and release)(6) 11 repressed 0.81 0.139012789395071 -0.112600359410008 5. Expression during the cell cycle (alpha factor arrest and release)(8) 13 repressed -0.29 0.132814133681852 0.0385160987677371 5. Expression during the cell cycle (alpha factor arrest and release)(10) 15 induced 0.16 0.131868932038835 0.0210990291262136 5. Expression during the cell cycle (alpha factor arrest and release)(12) 17 induced -0.02 0.114579443614638 -0.00229158887229276 5. Expression during the cell cycle (alpha factor arrest and release)(14) 19 repressed -0.36 0.104329723674384 0.0375587005227782 5. Expression during the cell cycle (alpha factor arrest and release)(16) 21 repressed 0 0.106413834951456 0 6. Expression during the cell cycle (cdc15 arrest and release)(2) 25 repressed 0.61 0.113143203883495 -0.0690173543689319 6. Expression during the cell cycle (cdc15 arrest and release)(3) 26 repressed 0.28 0.157917755787901 -0.0442169716206123 6. Expression during the cell cycle (cdc15 arrest and release)(4) 27 repressed 0.17 0.106703230022405 -0.0181395491038089 6. Expression during the cell cycle (cdc15 arrest and release)(5) 28 induced -0.09 0.100702483196415 -0.00906322348767735 6. Expression during the cell cycle (cdc15 arrest and release)(7) 30 induced -0.11 0.0995948469006721 -0.0109554331590739 6. Expression during the cell cycle (cdc15 arrest and release)(8) 31 induced 0.09 0.13082710978342 0.0117744398805078 6. Expression during the cell cycle (cdc15 arrest and release)(9) 32 induced -0.58 0.129215365944735 -0.0749449122479463 6. Expression during the cell cycle (cdc15 arrest and release)(10) 33 induced 0.23 0.12585931665422 0.0289476428304706 6. Expression during the cell cycle (cdc15 arrest and release)(12) 35 repressed -0.16 0.118764936519791 0.0190023898431666 6. Expression during the cell cycle (cdc15 arrest and release)(14) 37 repressed 0.07 0.141623879761016 -0.00991367158327112 7. Expression during the cell Cycle (cdc28)(1) 48 repressed -0.34 0.095832710978342 0.0325831217326363 7. Expression during the cell Cycle (cdc28)(3) 50 repressed 0.3 0.101833457804332 -0.0305500373412996 7. Expression during the cell Cycle (cdc28)(4) 51 repressed 0.11 0.147654032860344 -0.0162419436146378 7. Expression during the cell Cycle (cdc28)(8) 55 induced 0.22 0.122915888722928 0.0270414955190442 7. Expression during the cell Cycle (cdc28)(9) 56 induced -0.24 0.163908233756535 -0.0393379761015684 7. Expression during the cell Cycle (cdc28)(10) 57 induced 0.38 0.117446788648245 0.0446297796863331 8. Expression during the cell cycle (cell size selection and release)(1) 65 repressed -0.3 0.10733429798357 0.032200289395071 8. Expression during the cell cycle (cell size selection and release)(4) 68 repressed 0 0.117747386109037 0 8. Expression during the cell cycle (cell size selection and release)(5) 69 repressed -0.01 0.115654406273338 0.00115654406273338 8. Expression during the cell cycle (cell size selection and release)(6) 70 repressed -0.11 0.130650672143391 0.014371573935773 8. Expression during the cell cycle (cell size selection and release)(7) 71 repressed -0.04 0.118958177744586 0.00475832710978344 8. Expression during the cell cycle (cell size selection and release)(8) 72 repressed 0.25 0.100439227035101 -0.0251098067587752 8. Expression during the cell cycle (cell size selection and release)(9) 73 induced 0.02 0.126677091112771 0.00253354182225542 8. Expression during the cell cycle (cell size selection and release)(10) 74 induced 0.12 0.110356142643764 0.0132427371172517 8. Expression during the cell cycle (cell size selection and release)(11) 75 bimodal 0.21 0.127374906646751 0.0267487303958177 8. Expression during the cell cycle (cell size selection and release)(12) 76 induced 0.05 0.188696321882002 0.0094348160941001 8. Expression during the cell cycle (cell size selection and release)(13) 77 induced 0.28 0.129184092606423 0.0361715459297984 8. Expression during the cell cycle (cell size selection and release)(14) 78 induced 0.04 0.0993871359223301 0.0039754854368932 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(4) 92 induced -0.234 0.123026045556385 -0.0287880946601941 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(5) 93 induced -0.304 0.0963960978342046 -0.0293044137415982 12. Expression in tup1-deleted cells(1) 96 induced -0.761 0.17740431292009 -0.135004682132189 15. evolved strain 1 versus evolved strain 1(1) 99 repressed 0 0.100367811799851 0 27. Young: Expression in rpb1 mutant(1) 111 repressed -1.495 0.126632281553398 0.18931526092233 28. Young: Expression in srb4 mutant(1) 112 repressed -1.495 0.107079443614638 0.160083768203884 29. Young: Expression in srb5 mutant(1) 113 repressed -1.587 0.136385362210605 0.21644356982823 30. Young: Expression in med6 mutant(1) 114 repressed -0.352 0.0965706684092606 0.0339928752800597 32. Young: Expression in swi2 mutant(1) 116 repressed -0.317 0.107869212098581 0.0341945402352502 33. Young: Expression in taf145 mutant(1) 117 induced -0.524 0.107356702763256 -0.0562549122479461 36. Young: Expression in kin28 mutant(1) 120 repressed -0.604 0.103293035847648 0.0623889936519794 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(3) 124 induced 0.072 0.124558905899925 0.0089682412247946 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(4) 125 induced -0.528 0.0977506534727409 -0.0516123450336072 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(6) 127 induced -0.263 0.101857262882748 -0.0267884601381627 40. Young: Expression in sir3 deletion mutant(1) 130 repressed -0.257 0.100147964899178 0.0257380269790887 41. Young: Expression in sir4 deletion mutant(1) 131 repressed 0.015 0.103101194921583 -0.00154651792382375 43. Young: Expression in fcp1 deletion mutant(1) 133 repressed -2.33 0.117653099327857 0.274131721433907 46. Expression in swi1 mutant cells in YPD(1) 136 repressed -0.582 0.103930171769978 0.0604873599701272 47. Expression in swi1 mutant cells in minimal medium(1) 137 repressed -0.546 0.121485250186707 0.066330946601942 48. Expression in response to 0.15,0.5,1.5,5,15.8,50,158,500 nM alpha-factor(2) 139 induced -0.006 0.112841206123973 -0.000677047236743838 48. Expression in response to 0.15,0.5,1.5,5,15.8,50,158,500 nM alpha-factor(3) 140 induced -0.055 0.098602501867065 -0.00542313760268858 48. Expression in response to 0.15,0.5,1.5,5,15.8,50,158,500 nM alpha-factor(4) 141 induced -0.042 0.100297796863331 -0.0042125074682599 48. Expression in response to 0.15,0.5,1.5,5,15.8,50,158,500 nM alpha-factor(5) 142 induced 0.01 0.117029032860344 0.00117029032860344 48. Expression in response to 0.15,0.5,1.5,5,15.8,50,158,500 nM alpha-factor(6) 143 induced -0.003 0.118882561613144 -0.000356647684839432 49. Expression in response to 50 nM alpha-factor: 0,15,30,45,60,90,120 min(3) 148 induced -0.014 0.106931478715459 -0.00149704070201643 49. Expression in response to 50 nM alpha-factor: 0,15,30,45,60,90,120 min(7) 152 induced 0.096 0.102366971620612 0.00982722927557875 50. Expression in response to 50 nM alpha-factor in bni1 deletion mutant: 60,90,120 min(2) 154 repressed -0.056 0.102925224047797 0.00576381254667663 50. Expression in response to 50 nM alpha-factor in bni1 deletion mutant: 60,90,120 min(3) 155 repressed 0.006 0.118618838685586 -0.000711713032113516 51. Expression in response to 50 nM alpha-factor in kss1 deletion mutant 30 min(1) 156 induced -0.051 0.104341392830471 -0.00532141103435402 53. Expression in response to overproduction of Ste4p(1) 158 repressed -0.036 0.132978435399552 0.00478722367438387 54. Expression in response to overproduction of Ste5p(1) 159 repressed -0.138 0.123677184466019 0.0170674514563106 55. Expression in response to overproduction of Ste11p(1) 160 repressed -0.088 0.11195855115758 0.00985235250186704 56. Expression in response to overproduction of Ste12p(1) 161 repressed 0.03 0.107111183719193 -0.00321333551157579 57. Expression in response to alpha-factor in far1 deletion mutant cells(1) 162 repressed -0.022 0.096062359970127 0.00211337191934279 60. Expression in response to alpha-factor in ste20 deletion mutant cells(1) 165 repressed 0.031 0.0981502053771471 -0.00304265636669156 61. Expression in response to alpha-factor in rst1 rst2 double deletion mutant cells(1) 166 induced 0.034 0.104258308439134 0.00354478248693056 62. Expression in response to osmotic shock in hog1 deletion mutant cells(1) 167 induced 0.142 0.11096713965646 0.0157573338312173 63. Expression in response to alpha-factor in fus3 loss-of-function mutant cells(1) 168 induced 0.256 0.107372106049291 0.0274872591486185 68. Expression in ste11 deletion mutant cells(1) 173 induced 0.021 0.102307225541449 0.00214845173637043 70. Expression in ste18 deletion mutant cells(1) 175 repressed -0.03 0.0995822442120986 0.00298746732636296 71. Expression in bni1 deletion mutant cells(1) 176 induced -0.015 0.114002520537715 -0.00171003780806572 72. Expression in response to overproduction of activated Bni1p(1) 177 bimodal -0.022 0.137671769977595 -0.00302877893950709 73. Expression in response to overproduction of activated Pkc1p(1) 178 induced 0.296 0.123437733383122 0.0365375690814041 74. Expression in response to overproduction of activated Rho1p(1) 179 induced 0.005 0.122883215085885 0.000614416075429425 75. Expression in fus3 deletion mutant cells treated with alpha-factor compared to wild-type cells treated with alpha-factor(1) 180 repressed 0.047 0.110337471994025 -0.00518586118371917 79. Expression in fus3 deletion mutant cells(1) 185 induced 0.021 0.104077669902913 0.00218563106796117 80. Expression in fus3 tec1 double deletion mutant cells(1) 186 repressed 0.014 0.118413928304705 -0.00165779499626587 81. Expression in fus3 tec1 double deletion mutant cells treated with alpha-factor compared to wild-type untreated cells(1) 187 repressed -0.05 0.0961925877520538 0.00480962938760269 82. Expression in response to alpha-factor in fus3 deletion mutant cells(1) 188 repressed -0.153 0.132993838685586 0.0203480573188947 87. Expression in response to a-factor in wild-type alpha cells(1) 193 induced 0.008 0.109500560119492 0.000876004480955936 94. Expression in response to 1ug/mL FK506(1) 200 induced 0.02 0.0966514189693801 0.0019330283793876 99. Church: mating type a glucose 30 C vs. mating type a glactose 30 C FOLLOWED BY 30 C HEAT SHOCK(1) 205 induced 0 0.115227315160568 0 100. Young: Expression in spt20 deletion mutant(1) 206 repressed -1.4 0.0973949775952203 0.136352968633308 102. Young: Expression in taf25_2 deletion mutant(1) 208 induced -1.722 0.0970402352501867 -0.167103285100821 103. Young: Expression in taf60 deletion mutant(1) 209 induced -1.068 0.102462191934279 -0.10942962098581 105. Young: Expression in taf90 deletion mutant(1) 211 induced -0.47 0.103998319641524 -0.0488792102315163 106. Young: Expression in tsm1 deletion mutant(1) 212 induced -0.035 0.134826362957431 -0.00471892270351009 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(8) 220 repressed -0.4 0.124205097087379 0.0496820388349516 121. Rosetta 2000: Expression in ase1 (**12) deletion mutant (1) 240 repressed 0.013 0.126554798356983 -0.00164521237864078 124. Rosetta 2000: Expression in bni1 (haploid) deletion mutant (1) 243 induced -0.066 0.101032020164302 -0.00666811333084393 127. Rosetta 2000: Expression in bub3 (**2,8,13) deletion mutant (1) 246 induced -0.093 0.100105955937267 -0.00930985390216583 130. Rosetta 2000: Expression in cat8 deletion mutant (1) 249 induced -0.007 0.0976652352501867 -0.000683656646751307 136. Rosetta 2000: Expression in cla4 (haploid) deletion mutant (1) 255 induced 0.146 0.111987023898432 0.0163501054891711 149. Rosetta 2000: Expression in dig1, dig2 (haploid) deletion mutant (1) 268 induced -0.199 0.113340646004481 -0.0225547885548917 154. Rosetta 2000: Expression in ecm10 deletion mutant (1) 273 induced 0.09 0.101708831217326 0.00915379480955934 161. Rosetta 2000: Expression in erg2 deletion mutant (1) 280 repressed -0.419 0.0972787528005975 0.0407597974234504 162. Rosetta 2000: Expression in erg3 (haploid) deletion mutant (1) 281 repressed -0.057 0.14051997759522 0.00800963872292754 163. Rosetta 2000: Expression in erg4 (haploid **7) deletion mutant (1) 282 bimodal -0.01 0.100580657206871 -0.00100580657206871 168. Rosetta 2000: Expression in far1 (haploid) deletion mutant (1) 287 induced -0.193 0.102259615384615 -0.0197361057692307 169. Rosetta 2000: Expression in fks1 (haploid) deletion mutant (1) 288 induced 0 0.115403286034354 0 170. Rosetta 2000: Expression in fpr1 deletion mutant (1) 289 induced 0.681 0.104655993278566 0.0712707314227035 173. Rosetta 2000: Expression in fus3 (haploid) deletion mutant (1) 292 induced 0.07 0.104077669902913 0.00728543689320391 176. Rosetta 2000: Expression in gas1 deletion mutant (1) 295 induced -0.13 0.10709858103062 -0.0139228155339806 180. Rosetta 2000: Expression in gpa2 deletion mutant (1) 299 induced 0.206 0.101211725168036 0.0208496153846154 200. Rosetta 2000: Expression in kin3 deletion mutant (1) 319 induced 0.03 0.121990291262136 0.00365970873786408 202. Rosetta 2000: Expression in kss1 (haploid) deletion mutant (1) 321 repressed -0.04 0.0977184466019417 0.00390873786407767 207. Rosetta 2000: Expression in med2 (haploid) deletion mutant (1) 326 repressed -0.169 0.142918222554145 0.0241531796116505 214. Rosetta 2000: Expression in nta1 deletion mutant (1) 333 induced 0.216 0.0959111277072442 0.0207168035847647 215. Rosetta 2000: Expression in ost3 deletion mutant (1) 334 induced -0.472 0.10005927931292 -0.0472279798356982 220. Rosetta 2000: Expression in pep12 deletion mutant (1) 339 induced -0.06 0.121694828230022 -0.00730168969380132 229. Rosetta 2000: Expression in qcr2 (haploid) deletion mutant (1) 348 induced -0.136 0.139550037341299 -0.0189788050784167 237. Rosetta 2000: Expression in rip1 deletion mutant (1) 356 induced -0.292 0.100284727408514 -0.0292831404032861 249. Rosetta 2000: Expression in rps24a (haploid) deletion mutant (1) 368 repressed 0.455 0.0964843166542196 -0.0439003640776699 250. Rosetta 2000: Expression in rps27b (**11) deletion mutant (1) 369 repressed -0.113 0.0990347274085138 0.0111909241971621 252. Rosetta 2000: Expression in rtg1 deletion mutant (1) 371 induced -0.03 0.125344940253921 -0.00376034820761763 253. Rosetta 2000: Expression in rts1 deletion mutant (1) 372 induced -0.379 0.104035660941001 -0.0394295154966394 254. Rosetta 2000: Expression in rvs161 (haploid) deletion mutant (1) 373 induced -0.223 0.122637229275579 -0.0273481021284541 259. Rosetta 2000: Expression in sbp1 deletion mutant (1) 378 induced 0.05 0.105138162808066 0.0052569081404033 260. Rosetta 2000: Expression in scs7 deletion mutant (1) 379 induced 0.057 0.138081590739358 0.00787065067214341 263. Rosetta 2000: Expression in she4 deletion mutant (1) 382 induced -0.066 0.109778286034354 -0.00724536687826736 269. Rosetta 2000: Expression in sod1 (haploid) deletion mutant (1) 388 repressed 0.046 0.124903846153846 -0.00574557692307692 271. Rosetta 2000: Expression in ssn6 (haploid) deletion mutant (1) 390 induced 0.326 0.114258775205377 0.0372483607169529 274. Rosetta 2000: Expression in ste11 (haploid) deletion mutant (1) 393 induced 0.07 0.102307225541449 0.00716150578790143 279. Rosetta 2000: Expression in ste24 (haploid) deletion mutant (1) 398 repressed 0.043 0.113793876026886 -0.0048931366691561 282. Rosetta 2000: Expression in ste7 (haploid) deletion mutant (1) 401 repressed 0.096 0.106224794622853 -0.0101975802837939 283. Rosetta 2000: Expression in swi4 deletion mutant (1) 402 repressed -0.14 0.108482076176251 0.0151874906646751 285. Rosetta 2000: Expression in swi6 (haploid) deletion mutant (1) 404 induced 0.286 0.156959484690067 0.0448904126213592 289. Rosetta 2000: Expression in top3 (haploid) deletion mutant (1) 408 induced -0.013 0.118368651979089 -0.00153879247572816 290. Rosetta 2000: Expression in tup1 (haploid) deletion mutant (1) 409 induced -0.369 0.148606702763256 -0.0548358733196415 291. Rosetta 2000: Expression in ubp8 deletion mutant (1) 410 repressed 0.023 0.0962047236743839 -0.00221270864451083 311. Rosetta 2000: Expression in yel020c deletion mutant (1) 430 repressed 0.01 0.0978435399551904 -0.000978435399551904 324. Rosetta 2000: Expression in yer044c (haploid) deletion mutant (1) 443 repressed -0.329 0.10270210978342 0.0337889941187452 334. Rosetta 2000: Expression in yhl029c deletion mutant (1) 453 repressed 0.05 0.100510175504108 -0.0050255087752054 336. Rosetta 2000: Expression in yhl045w deletion mutant (1) 455 induced 0.076 0.0989833831217326 0.00752273711725168 339. Rosetta 2000: Expression in yhr031c deletion mutant (1) 458 induced 0.036 0.105706684092606 0.00380544062733382 342. Rosetta 2000: Expression in yil037c (haploid) deletion mutant (1) 461 induced -0.106 0.0982823002240478 -0.0104179238237491 344. Rosetta 2000: Expression in yjl107c (haploid) deletion mutant (1) 463 repressed -0.166 0.099119212098581 0.0164537892083644 358. Rosetta 2000: Expression in ymr031w-a deletion mutant (1) 477 repressed -0.256 0.109738610903659 0.0280930843913367 368. Rosetta 2000: Expression in ymr237w deletion mutant (1) 487 repressed -0.083 0.103920369678865 0.0086253906833458 373. Rosetta 2000: Expression in ymr293c deletion mutant (1) 492 induced -0.163 0.0983952576549664 -0.0160384269977595 377. Rosetta 2000: Expression in yor015w deletion mutant (1) 496 repressed -0.12 0.0957388909634055 0.0114886669156087 382. Rosetta 2000: Expression in yor080w (**3) deletion mutant (1) 501 induced -0.166 0.115518110530246 -0.0191760063480208 386. Rosetta 2000: Expression in cells with CDC42 under tet promoter(1) 505 induced 0.253 0.108733196415235 0.0275094986930545 387. Rosetta 2000: Expression in cells with ERG11 under tet promoter(1) 506 bimodal -0.322 0.108919902912621 -0.035072208737864 388. Rosetta 2000: Expression in cells with FKS1 under tet promoter(1) 507 induced 0.203 0.146026885735624 0.0296434578043317 389. Rosetta 2000: Expression in cells with HMG2 under tet promoter(1) 508 induced 0.239 0.115878920836445 0.0276950620799104 397. Rosetta 2000: Expression in response to Cycloheximide white(1) 516 repressed -0.033 0.103564693801344 0.00341763489544435 398. Rosetta 2000: Expression in response to Doxycycline(1) 517 induced -0.166 0.102880414488424 -0.0170781488050784 399. Rosetta 2000: Expression in response to FR901,228(1) 518 repressed 0.153 0.103885362210605 -0.0158944604182226 401. Rosetta 2000: Expression in response to HU(1) 520 induced 0.06 0.128351381628081 0.00770108289768486 404. Rosetta 2000: Expression in response to MMS(1) 523 induced 0.136 0.113704723674384 0.0154638424197162 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(1) 527 induced 0.09 0.138921769977595 0.0125029592979836 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(4) 530 repressed 0.4 0.117497666168783 -0.0469990664675132 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(1) 540 induced -0.03 0.11466859596714 -0.0034400578790142 Expression in PDR1-3 mutant(1) 555 repressed 0.029 0.126172050037341 -0.00365898945108289 Low-Pi vs High-Pi in WT (NBW7) exp1(1) 577 induced 0.345 0.109002987303958 0.0376060306198655 Low-Pi vs High-Pi in WT (DBY7286)(1) 579 induced 0.176 0.114850634802091 0.020213711725168 PHO81c vs WT exp2(1) 584 induced -0.074 0.109886109036594 -0.00813157206870796 430. Expression in strain PM38 (wild type), glucose versus ethanol: strain was shifted from medium containing dextrose as carbon source, ammonium sulfate as nirogen source, supplemented with leucine and uracil to same medium for 30 min, compared to a shift to a medium with synthetic ethanol instead of glucose for 30 min(1) 587 induced 0 0.112261015683346 0 436. Expression in wild type versus strain MS221 under steady state conditions in YPD(1) 593 repressed 0 0.097903286034354 0 440. Expression in strain TS19-4c in response to 30 min 50 nM treatment with rapamycin in YPD(1) 597 induced 0 0.0985371545929798 0 441. Expression in wild type versus strain TS19-4c under steady state conditions in YPD(1) 598 induced 0.15 0.107088312173264 0.0160632468259896 460. Expression of stationary phase cells in response to 0.1% MMS for 60 min(1) 617 repressed -0.168 0.122141990291262 0.020519854368932 479. Expression in diploid cells in response to rapamycin (100nM) for: 15min,30min,90min,120min(2) 644 induced -1.855 0.0968829350261389 -0.179717844473488 482. Expression in response to acid: 10,20,40,60,80,100 min(2) 658 induced -0.098 0.102844006721434 -0.0100787126587005 483. Expression in response to alkali: 10,20,40,60,80,100 min(6) 668 induced -0.153 0.0962000560119492 -0.0147186085698282 486. Expression in response to NaCl: 15 30 45 60 120 min(2) 677 induced -0.562 0.102552744585512 -0.0576346424570578 486. Expression in response to NaCl: 15 30 45 60 120 min(3) 678 induced 0.326 0.109633121732636 0.0357403976848393 486. Expression in response to NaCl: 15 30 45 60 120 min(4) 679 induced 0.372 0.103366318147872 0.0384522703510084 486. Expression in response to NaCl: 15 30 45 60 120 min(5) 680 induced -0.039 0.115610997012696 -0.00450882888349514 487. Expression in response to sorbitol: 15 30 45 90 120 min(5) 685 induced 0.898 0.105292662434653 0.0945528108663184 490. Brown enviromental changes :Heat Shock 15 minutes hs-1(1) 688 induced -0.27 0.103090459297984 -0.0278344240104557 491. Brown enviromental changes :Heat Shock 20 minutes hs-1(1) 689 induced -0.09 0.10682645631068 -0.0096143810679612 492. Brown enviromental changes :Heat Shock 30 minutes hs-1(1) 690 induced -0.32 0.109724607916355 -0.0351118745332336 496. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 694 repressed 0.04 0.106860063480209 -0.00427440253920836 497. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 695 repressed 0.39 0.101249066467513 -0.0394871359223301 498. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 696 repressed 0.19 0.107084578043316 -0.02034606982823 508. Brown enviromental changes :heat shock 17 to 37, 20 minutes(1) 706 induced -0.3 0.129676997759522 -0.0389030993278566 509. Brown enviromental changes :heat shock 21 to 37, 20 minutes(1) 707 induced 0.11 0.121245799103809 0.013337037901419 510. Brown enviromental changes :heat shock 25 to 37, 20 minutes(1) 708 induced 0.44 0.122605489171023 0.0539464152352501 511. Brown enviromental changes :heat shock 29 to 37, 20 minutes(1) 709 induced 0.07 0.103941374159821 0.00727589619118747 512. Brown enviromental changes :heat shock 33 to 37, 20 minutes(1) 710 induced -0.67 0.103588498879761 -0.0694042942494399 514. Brown enviromental changes :29C to 33C - 15 minutes(1) 712 induced 0.16 0.102573282300224 0.0164117251680358 516. Brown enviromental changes :33C vs. 30C - 90 minutes(1) 714 induced -0.09 0.101262602688574 -0.00911363424197166 517. Brown enviromental changes :29C +1M sorbitol to 33C + 1M sorbitol - 5 minutes(1) 715 induced 0.25 0.109223300970874 0.0273058252427185 527. Brown enviromental changes :constant 0.32 mM H2O2 (50 min) redo(1) 725 induced -0.62 0.105891990291262 -0.0656530339805824 546. Brown enviromental changes :2.5mM DTT 060 min dtt-1(1) 744 induced 0.34 0.0998020911127707 0.033932710978342 548. Brown enviromental changes :2.5mM DTT 120 min dtt-1(1) 746 induced 0.15 0.114658793876027 0.017198819081404 551. Brown enviromental changes :dtt 015 min dtt-2(1) 749 repressed 0.07 0.099718073188947 -0.00698026512322629 554. Brown enviromental changes :dtt 120 min dtt-2(1) 752 induced -0.23 0.113159540702016 -0.0260266943614637 555. Brown enviromental changes :dtt 240 min dtt-2(1) 753 induced 0.26 0.118799010455564 0.0308877427184466 556. Brown enviromental changes :dtt 480 min dtt-2(1) 754 induced 0.18 0.149086538461538 0.0268355769230768 558. Brown enviromental changes :1.5 mM diamide (10 min)(1) 756 induced -0.2 0.105663274831964 -0.0211326549663928 559. Brown enviromental changes :1.5 mM diamide (20 min)(1) 757 induced -0.09 0.106018017176998 -0.00954162154592982 560. Brown enviromental changes :1.5 mM diamide (30 min)(1) 758 induced -0.36 0.1103071321882 -0.039710567587752 561. Brown enviromental changes :1.5 mM diamide (40 min)(1) 759 induced -0.06 0.103665048543689 -0.00621990291262134 562. Brown enviromental changes :1.5 mM diamide (50 min)(1) 760 induced -0.32 0.0989969193427931 -0.0316790141896938 565. Brown enviromental changes :1M sorbitol - 5 min(1) 763 induced 0.26 0.121274738610904 0.031531432038835 566. Brown enviromental changes :1M sorbitol - 15 min(1) 764 induced -0.06 0.110218913368185 -0.0066131348020911 567. Brown enviromental changes :1M sorbitol - 30 min(1) 765 induced -0.07 0.107567214339059 -0.00752970500373413 568. Brown enviromental changes :1M sorbitol - 45 min (1) 766 induced -0.1 0.107003360716953 -0.0107003360716953 571. Brown enviromental changes :1M sorbitol - 120 min(1) 769 induced -0.18 0.111120238984317 -0.0200016430171771 578. Brown enviromental changes :aa starv 0.5 h(1) 776 induced -0.09 0.0978155339805825 -0.00880339805825242 586. Brown enviromental changes :Nitrogen Depletion 4 h(1) 784 repressed 0.01 0.121303211351755 -0.00121303211351755 589. Brown enviromental changes :Nitrogen Depletion 1 d(1) 787 repressed 0.18 0.109497759522031 -0.0197095967139656 590. Brown enviromental changes :Nitrogen Depletion 2 d(1) 788 repressed 0.28 0.125339805825243 -0.035095145631068 591. Brown enviromental changes :Nitrogen Depletion 3 d(1) 789 repressed 0.08 0.123315440627334 -0.00986523525018672 592. Brown enviromental changes :Nitrogen Depletion 5 d(1) 790 repressed 0.46 0.140429424943988 -0.0645975354742345 606. Brown enviromental changes :YPD 12 h ypd-2(1) 797 induced 0.32 0.103175410754294 0.0330161314413741 610. Brown enviromental changes :YPD 5 d ypd-2(1) 801 induced -0.51 0.113672983569828 -0.0579732216206123 611. Brown enviromental changes :YPD stationary phase 2 h ypd-1(1) 802 induced 0.14 0.107355769230769 0.0150298076923077 612. Brown enviromental changes :YPD stationary phase 4 h ypd-1(1) 803 induced 0.04 0.125967606422704 0.00503870425690816 613. Brown enviromental changes :YPD stationary phase 8 h ypd-1(1) 804 induced -0.01 0.120480769230769 -0.00120480769230769 616. Brown enviromental changes :YPD stationary phase 2 d ypd-1(1) 807 induced -0.15 0.111945481702763 -0.0167918222554144 617. Brown enviromental changes :YPD stationary phase 3 d ypd-1(1) 808 induced -0.03 0.0966014749813293 -0.00289804424943988 621. Brown enviromental changes :YPD stationary phase 22 d ypd-1(1) 812 induced -0.76 0.0999813293502614 -0.0759858103061987 623. Brown enviromental changes :DBY7286 37degree heat - 20 min(1) 814 induced 0.4 0.111037621359223 0.0444150485436892 626. Brown enviromental changes :DBYyap1- 37degree heat - 20 min (redo)(1) 817 induced 0.18 0.112745985810306 0.0202942774458551 627. Brown enviromental changes :DBYyap1 + 37degree heat (repeat)(1) 818 induced 0.42 0.0992251680358476 0.041674570575056 634. Brown enviromental changes :MSN4 overexpression(1) 825 induced 0.34 0.098729929051531 0.0335681758775205 640. Brown enviromental changes :raffinose car-1(1) 831 induced 0.12 0.106027819268111 0.0127233383121733 654. Brown enviromental changes :steady state 15 dec C ct-2(1) 845 induced 0.07 0.109340926064227 0.00765386482449589 678. Expression in gcr1 mutant YPGL+glucose versus gcr1 mutant YPGL(1) 866 induced -0.31 0.104743278566094 -0.0324704163554891 trp- 2% Glucose-Average fus3 (+Vector) 5mM aF, 30 min. 897 induced 0 0.106591206123973 0 ( trp- 2% Glucose-203792) fus3 (+Fus3K42R) 5mM aF, 30 min. 899 induced -0.32 0.102478061986557 -0.0327929798356982 trp- 2% Glucose-Average fus3 (+Fus3K42R) 5mM aF, 30 min. 901 induced -0.2 0.100598861090366 -0.0201197722180732 ( trp- 2% Glucose-228585) wt vs fus3 (+Fus3T180A,Y182F) + 5mM aF, 30 min. 911 induced -0.19 0.107449589245706 -0.0204154219566841 Addition of 1M NaCl (90) 917 induced 0.77 0.10215786034354 0.0786615524645258 DES460 + 0.02% MMS - 120 min 925 induced 0.384 0.103822815533981 0.0398679611650487 wt_plus_gamma_5_min 936 induced 0.335 0.106840926064227 0.035791710231516 wt_plus_gamma_10_min 937 induced 0.377 0.120347740851382 0.045371098300971 wt_plus_gamma_20_min 938 induced 0.074 0.103613704256908 0.00766741411501119 DES460 (wt) - mock irradiation - 5 min 944 induced -0.257 0.103961911874533 -0.026718211351755 mec1_plus_gamma_20_min 950 repressed 0.014 0.105840179238237 -0.00148176250933532 mec1_plus_gamma_30_min 951 repressed 0.095 0.125627800597461 -0.0119346410567588 mec1_plus_gamma_45_min 952 repressed -0.233 0.132391243465273 0.0308471597274086 DES459 (mec1) + heat 20 min 961 induced 0.067 0.100127893950709 0.0067085688946975 gal1+gal 975 repressed -0.455 0.135848114264376 0.0618108919902911 gal5+gal 979 induced 0.767 0.101966486183719 0.0782082949029125 gal80-gal 992 repressed 0.063 0.0985520911127707 -0.00620878174010455 gal1gal10+gal 993 repressed -0.691 0.0974603248693054 0.06734508448469 gal2gal80-gal 994 repressed -0.498 0.100554518297237 0.050076150112024 BY4741 GAL t=90min vs. t=0 (YT00262) 998 repressed 0.12 0.0985642270351008 -0.0118277072442121 sfp1::GALSFP1 t=10min GAL vs. t=0 RAFF (YT00270) 1001 induced -0.05 0.108348114264376 -0.0054174057132188 sfp1::GALSFP1 t=20min GAL vs. t=0 RAFF (YT00234) 1002 repressed -0.34 0.109521097834205 0.0372371732636297 sfp1::GALSFP1 t=40min GAL vs. t=0 RAFF (YT00268) 1004 repressed -0.4 0.105299197162061 0.0421196788648244 YAL038W 1010 induced 0.067508 0.116327949962659 0.00785306724607918 YBL020W 1013 induced 0.012905 0.127282486930545 0.00164258049383868 YBL084C 1015 induced -0.14351 0.111896938013443 -0.0160583295743092 YBR002C 1016 induced 0.027422 0.103529219566841 0.00283897825896191 YBR088C 1018 induced -0.051336 0.125421956684093 -0.0064386615683346 YBR143C 1020 induced 0.038507 0.122151325616131 0.00470368109550036 YBR196C 1024 induced -0.20505 0.117001493651979 -0.0239911562733383 YBR243C 1026 induced 0.07409 0.114961725168036 0.00851751421769979 YCR042C 1029 induced 0.14785 0.100441094100075 0.0148502157626961 YDL047W 1032 induced -0.043578 0.100677744585512 -0.00438733475354744 YDL055C 1033 induced -0.12909 0.0987682038834952 -0.0127499874393204 YDR047W 1039 induced 0.34431 0.158722460791636 0.0546497304751682 YDR141C 1042 induced 0.082121 0.112359503360717 0.00922707477548544 YDR489W 1047 induced 0.16758 0.144838965646004 0.0242721138629573 YER172C 1050 induced 0.065992 0.0987476661687827 0.00651655598581031 YFL005W 1051 induced 0.12227 0.118330377147125 0.014468255213779 YFL024C 1052 induced 0.24513 0.143772404779686 0.0352429295836444 YGL116W 1055 induced 0.076881 0.0992541075429425 0.00763075504200896 YGR048W 1057 induced 0.62285 0.107910754294249 0.067212213312173 YGR175C 1062 induced 0.079744 0.107568614637789 0.00857795160567584 YGR280C 1064 induced -0.086683 0.109572442120986 -0.00949806800037343 YHR118C 1069 induced 0.075458 0.112224607916356 0.00846824446415239 YIL106W 1073 induced 0.076495 0.106960884988798 0.0081819728972181 YJL009W 1077 repressed -0.037099 0.10977641896938 0.00407259536734503 YJL011C 1078 repressed 0.14114 0.110236650485437 -0.0155588008495146 YJL081C 1082 induced 0.12453 0.132175130694548 0.0164597690253921 YJL091C 1083 induced 0.18962 0.115909727408514 0.0219788025112024 YJR007W 1086 repressed 0.19892 0.119532766990291 -0.0237774580097087 YJR076C 1087 repressed 0.34804 0.118133868558626 -0.0411153116131442 YKL052C 1089 induced 0.28042 0.122824402539208 0.0344424189600447 YKR079C 1094 induced 0.058634 0.112862677371173 0.00661759022498136 YKR086W 1095 induced -0.014002 0.119182692307692 -0.0016687960576923 YLL003W 1096 induced 0.12929 0.112398711725168 0.014532029438947 YLR060W 1100 repressed 0.0081382 0.133647778192681 -0.00108765234848768 YLR076C 1101 induced -0.03196 0.126301344286781 -0.00403659096340552 YLR086W 1102 induced -0.037931 0.146868932038835 -0.00557088546116505 YLR101C 1103 induced 0.1349 0.0974584578043316 0.0131471459578043 YLR163C 1105 induced 0.028299 0.102620425690814 0.00290405542662435 YLR359W 1112 induced 0.0031695 0.108646377893951 0.000344354694734878 YLR424W 1114 induced 0.25841 0.101694361463779 0.0262788399458551 YLR457C 1116 induced -0.04789 0.0992186333084391 -0.00475158034914115 YLR459W 1117 induced -0.018407 0.122941560866318 -0.00226298531086632 YML031W 1118 induced 0.16904 0.118405526512323 0.0200152702016431 YML046W 1119 induced 0.23974 0.0979541635548917 0.0234835311706497 YML130C 1120 induced 0.22328 0.112717046303211 0.025167462098581 YMR001C 1121 induced 0.29016 0.116251867064974 0.0337316417475729 YMR076C 1123 induced 0.15034 0.127351568334578 0.0191460347834205 YMR079W 1124 induced 0.46686 0.115099887976102 0.053735533700523 YMR200W 1126 induced 0.19982 0.13422283420463 0.0268204067307692 YMR239C 1128 induced -0.095013 0.169725074682599 -0.0161260885208178 YNL131W 1131 induced 0.029415 0.109070201643017 0.00320829998132935 YNL150W 1132 induced -0.090137 0.104344660194175 -0.00940531463592235 YNL158W 1133 induced 0.060874 0.119964525765497 0.00730272054144886 YNL272C 1136 induced 0.092603 0.0973090926064227 0.00901111390263256 YNR035C 1138 induced 0.47837 0.105973207617625 0.0506944033280433 YNR043W 1139 induced 0.07303 0.106141243465273 0.00775149501026889 YOR168W 1153 repressed 0.16275 0.0986837191934279 -0.0160607752987304 YOR204W 1155 induced 0.085515 0.109303117998506 0.00934705613564224 YOR232W 1157 induced 0.071133 0.11193287901419 0.00796212148291638 YOR236W 1158 induced -0.017306 0.14435072815534 -0.00249813370145631 YOR259C 1159 induced 0.16415 0.0962355302464526 0.0157970622899552 YOR261C 1160 induced 0.4001 0.112368371919343 0.0449585856049291 YOR335C 1164 induced 0.008033 0.117856142643764 0.000946738393857356 YPL010W 1166 induced 0.00492 0.116114637789395 0.000571284017923823 YPL063W 1167 induced 0.1071 0.11346853995519 0.0121524806292009 YPL076W 1168 induced 0.10771 0.138268297236744 0.0148928782953697 YPL228W 1172 induced 0.13164 0.106859596713966 0.0140669973114265 YPL231W 1173 induced 0.095719 0.113174477221807 0.0108329477851941 YPL243W 1174 induced 0.13059 0.136680825242718 0.0178491489684465 YPR178W 1179 induced -0.021026 0.109033793876027 -0.00229254455003734 YPR180W 1180 induced 0.15093 0.0991654219566841 0.0149670371359223 YBR029C 1182 induced 0.033396 0.11433999253174 0.00381849839058999 YDR054C 1183 induced 0.0028917 0.101546863330844 0.000293643064693802 YFR037C 1190 induced 0.19167 0.118011575802838 0.02261927873413 YGL073W 1191 induced 0.074856 0.110421489917849 0.00826571104929051 YGL122C 1192 induced 0.22633 0.102303024645258 0.0231542435679612 YGR198W 1196 induced 0.071854 0.124567307692308 0.0089506593269231 YHR205W 1201 induced 0.088656 0.139873039581777 0.012400584197162 YJL097W 1202 induced 0.2477 0.11115571321882 0.0275332701643017 YLR229C 1211 induced 0.355 0.0964805825242718 0.0342506067961165 YNL149C 1213 induced -0.01211 0.108439600448096 -0.00131320356142644 YNL245C 1215 induced -0.11786 0.0955302464525765 -0.0112591948469007 YNL258C 1216 induced 0.061404 0.114668129200896 0.00704108180545182 YOR077W 1220 induced 0.17858 0.12207430918596 0.0218000301344287 YPL075W 1221 induced 0.094586 0.0997362770724421 0.00943365550317401 YPR019W 1222 induced 0.1459 0.102029499626587 0.014886103995519 CUP2OE+ 1229 repressed NaN 0.125552651232263 0 GAT4OE+ 1232 induced -0.2272715 0.137954630321135 -0.0313531557650298 GIS1OE+ 1234 induced -0.1438015 0.106188853622106 -0.0152701164341393 HAC1OE+ 1237 repressed 0.042292 0.123407393577296 -0.005219145489171 HAP4OE+ 1238 repressed 0.086814 0.138339712471994 -0.0120098237985437 HMS1OE+ 1239 induced -0.031853 0.10339712471994 -0.00329350861370425 MBP1OE+ 1242 induced NaN 0.117365571321882 0 MET4OE+ 1244 repressed -0.001012 0.1151535660941 0.000116535408887229 MIG1OE+ 1246 induced NaN 0.129540235250187 0 MOT3OE+ 1247 induced 0.0566055 0.110772031366692 0.00627030622152728 RFX1OE+ 1253 induced NaN 0.106722367438387 0 ROX1OE+ 1256 repressed -0.046716 0.105556852128454 0.00493119390403286 SKN7OE+ 1260 induced NaN 0.103447068707991 0 SOK2OE+ 1261 induced 0.1201265 0.104418409260642 0.0125434180400485 STE12OE+ 1264 induced 0.254238 0.102809932785661 0.0261381916915609 SWI4OE+ 1268 induced -0.1021985 0.118263629574309 -0.01208636554705 UPC2OE+ 1270 induced -0.0258435 0.116122106049291 -0.00300100164768485 XBP1OE+ 1271 repressed -0.1802345 0.112572815533981 0.0202895051213593 YHP1OE+ 1273 repressed 0.019317 0.107377240477969 -0.00207420615431293 YOX1OE+ 1274 repressed -0.1398325 0.129990664675131 0.0181769196181853 YPR015COE+ 1275 induced -0.028347 0.14009428678118 -0.00397125274738611 ZAP1OE+ 1277 induced NaN 0.0965141896938014 0 WT/cst6+ 1282 induced 0.000809 0.152923823749066 0.000123715373412994 WT/mot3+ 1299 induced -0.0131715 0.109992064973861 -0.00144876048380321 WT/sok2+ 1312 induced -0.0733605 0.118629107542942 -0.008702690643904 WT/zap1+ 1328 repressed 0.0924125 0.0987546676624347 -0.00912616572535475