Input Cluster (n=187) YAL001C TFC3 YAL062W GDH3 YAR027W UIP3 YBL030C PET9 YBL097W BRN1 YBL098W BNA4 YBR054W YRO2 YBR057C MUM2 YBR118W TEF2 YBR195C MSI1 YBR203W YBR240C THI2 YBR249C ARO4 YBR275C RIF1 YCR004C YCP4 YCR026C YCR034W FEN1 YCR042C TAF2 YDL003W MCD1 YDL004W ATP16 YDL005C MED2 YDL007W RPT2 YDL028C MPS1 YDL046W YDL077C VAM6 YDL117W CYK3 YDL131W LYS21 YDL139C SCM3 YDL241W YDR023W SES1 YDR032C PST2 YDR033W MRH1 YDR040C ENA1 YDR132C YDR161W TCI1 YDR189W SLY1 YDR191W HST4 YDR240C SNU56 YDR247W YDR248C YDR253C MET32 YDR254W CHL4 YDR322W MRPL35 YDR367W YDR382W RPP2B YDR414C ERD1 YDR419W RAD30 YDR427W RPN9 YDR464W SPP41 YDR506C YDR524C AGE1 YEL009C GCN4 YEL023C YEL027W CUP5 YER026C CHO1 YER037W PHM8 YER045C ACA1 YER064C YFR001W LOC1 YFR011C YFR012W YGL001C ERG26 YGL033W HOP2 YGL036W YGL037C PNC1 YGL105W ARC1 YGL113W SLD3 YGL184C STR3 YGL205W POX1 YGL224C SDT1 YGL263W COS12 YGR004W YGR052W YGR059W SPR3 YGR066C YGR074W SMD1 YGR138C TPO2 YGR163W GTR2 YGR195W SKI6 YGR218W CRM1 YGR253C PUP2 YGR256W GND2 YGR273C YGR285C ZUO1 YHL022C SPO11 YHR001W OSH7 YHR052W CIC1 YHR079C IRE1 YHR085W IPI1 YHR216W IMD2 YIL045W PIG2 YIL060W YIL061C SNP1 YIL106W MOB1 YIL107C PFK26 YIR007W YJR001W YJR010W MET3 YJR055W HIT1 YJR076C CDC11 YJR094C IME1 YKL014C YKL048C ELM1 YKL061W YKL072W STB6 YKL109W HAP4 YKL140W TGL1 YKL149C DBR1 YKL152C GPM1 YKL166C TPK3 YKL188C PXA2 YKL208W CBT1 YKR014C YPT52 YKR046C YKR089C YKR090W PXL1 YLL012W YLL015W BPT1 YLL042C APG10 YLR012C YLR018C POM34 YLR049C YLR061W RPL22A YLR083C EMP70 YLR191W PEX13 YLR238W YLR272C YCS4 YLR354C TAL1 YLR361C DCR2 YLR362W STE11 YLR404W YLR411W CTR3 YML016C PPZ1 YML035C AMD1 YML066C SMA2 YML073C RPL6A YML092C PRE8 YML118W NGL3 YML125C YMR023C MSS1 YMR024W MRPL3 YMR044W IOC4 YMR098C YMR132C YMR133W REC114 YMR192W YMR204C YMR257C PET111 YMR284W YKU70 YNL014W HEF3 YNL231C PDR16 YNL308C KRI1 YOL023W IFM1 YOL041C NOP12 YOL048C YOL088C MPD2 YOL104C NDJ1 YOL115W TRF4 YOL122C SMF1 YOL123W HRP1 YOL132W GAS4 YOR001W RRP6 YOR018W ROD1 YOR046C DBP5 YOR058C ASE1 YOR114W YOR128C ADE2 YOR177C MPC54 YOR193W YOR233W KIN4 YOR308C SNU66 YPL016W SWI1 YPL054W LEE1 YPL065W VPS28 YPL088W YPL110C YPL125W KAP120 YPL128C TBF1 YPL140C MKK2 YPL178W CBC2 YPL203W TPK2 YPR001W CIT3 YPR007C SPO69 YPR035W GLN1 YPR036W VMA13 YPR066W UBA3 YPR104C FHL1 Genes Not Found: YBR012W-A YBR012W-B YCL019W YCL020W YER138C YFL002W-A YJL113W YJL114W YJR028W YJR029W YML045W YMR050C YMR051C MIPS Functional Classification Category p-value In Category from Cluster k f meiosis 0.000246875 MUM2 MPS1 HOP2 PUP2 SPO11 IME1 YKR046C REC114 NDJ1 MPC54 SPO69 11 104 chromosome 0.00178858 RIF1 HOP2 ZUO1 YCS4 NDJ1 TBF1 6 44 MIPS Phenotypes Category p-value In Category from Cluster k f MIPS Subcellular Localization Category p-value In Category from Cluster k f nucleus 0.00252531 TFC3 THI2 RIF1 TAF2 MCD1 MED2 RPT2 LYS21 SNU56 CHL4 RPN9 GCN4 ACA1 HOP2 SMD1 CRM1 PUP2 ZUO1 SPO11 SNP1 IME1 HAP4 DBR1 POM34 YCS4 PRE8 REC114 YKU70 NDJ1 TRF4 HRP1 ASE1 SNU66 SWI1 KAP120 TBF1 CBC2 SPO69 FHL1 39 836 chromosome structure 0.00435644 RIF1 HOP2 ZUO1 NDJ1 4 23 MIPS Protein Complexes Category p-value In Category from Cluster k f MIPS Protein Classes Category p-value In Category from Cluster k f Protein Kinases 0.00246342 MPS1 YDR247W YGR052W IRE1 ELM1 TPK3 STE11 KIN4 MKK2 TPK2 10 117 PKA family (cAMP dependent) 0.0026049 TPK3 TPK2 2 3 GO Molecular Function Category p-value In Category from Cluster k f binding [GO:0005488] 0.000597347 TFC3 TEF2 THI2 TAF2 ATP16 MED2 RPT2 VAM6 ENA1 SLY1 HST4 SNU56 MET32 GCN4 CUP5 ACA1 LOC1 ARC1 SLD3 SMD1 GTR2 SKI6 CRM1 SPO11 OSH7 IRE1 SNP1 IME1 HAP4 DBR1 PXA2 YPT52 PEX13 RPL6A MSS1 YKU70 HEF3 PDR16 IFM1 NOP12 HRP1 RRP6 DBP5 ASE1 SNU66 SWI1 TBF1 CBC2 SPO69 VMA13 FHL1 51 1106 cAMP-dependent protein kinase [GO:0004691] 0.0026049 TPK3 TPK2 2 3 cyclic-nucleotide dependent protein kinase [GO:0004690] 0.0026049 TPK3 TPK2 2 3 nucleic acid binding [GO:0003676] 0.00304844 TFC3 TEF2 THI2 TAF2 MED2 HST4 SNU56 MET32 GCN4 ACA1 LOC1 ARC1 SLD3 SMD1 SKI6 SPO11 IRE1 SNP1 IME1 HAP4 DBR1 RPL6A YKU70 HEF3 IFM1 NOP12 HRP1 RRP6 DBP5 SNU66 SWI1 TBF1 CBC2 FHL1 34 707 GO Biological Process Category p-value In Category from Cluster k f mitotic prophase [GO:0000088] 8.60242e-05 BRN1 MCD1 YCS4 TRF4 4 9 mitotic chromosome condensation [GO:0007076] 8.60242e-05 BRN1 MCD1 YCS4 TRF4 4 9 chromosome condensation [GO:0030261] 0.00048694 BRN1 MCD1 YCS4 TRF4 SPO69 5 23 GO Cellular Component Category p-value In Category from Cluster k f chromosome [GO:0005694] 4.37973e-05 BRN1 RIF1 MCD1 MPS1 CHL4 HOP2 SLD3 SPO11 YCS4 YKU70 NDJ1 TBF1 SPO69 13 118 mitotic chromosome [GO:0005708] 0.000444329 BRN1 MCD1 YCS4 SPO69 4 13 commitment complex [GO:0000243] 0.000607636 SNU56 SMD1 SNP1 CBC2 4 14 cAMP-dependent protein kinase complex [GO:0005952] 0.0026049 TPK3 TPK2 2 3 SMART Domains Category p-value In Category from Cluster k f PFam-A Domains Category p-value In Category from Cluster k f PF00069 (pkinase) 0.00203022 MPS1 YDR247W YGR052W IRE1 ELM1 TPK3 STE11 KIN4 MKK2 TPK2 10 114 PF01036 (Bac_rhodopsin) 0.0026049 YRO2 MRH1 2 3 Yeast Two Hybrid - Uetz Category p-value In Category from Cluster k f Yeast Two Hybrid - Ito (core) Category p-value In Category from Cluster k f Yeast Two Hybrid - Ito (full) Category p-value In Category from Cluster k f YGR092W (DBF2) 0.0026049 MOB1 YKL061W 2 3 Synthetic Genetic Array Analysis Category p-value In Category from Cluster k f MDS Proteomics Complexes Category p-value In Category from Cluster k f Cellzome Complexes Category p-value In Category from Cluster k f YFL017W-A (SMX2) 0.00134672 SNU56 SMD1 SNP1 SNU66 4 17 YBR119W (MUD1) 0.00192304 SNU56 SNP1 CBC2 3 9 YPL203W (TPK2) 0.0026049 TPK3 TPK2 2 3 YBR057C (MUM2) 0.0026049 MUM2 YGL036W 2 3 Proteome Localization--Observed Category p-value In Category from Cluster k f Proteome Localization--Predicted+Observed Category p-value In Category from Cluster k f Deletions Consortium (Essentiality, Morphology) Category p-value In Category from Cluster k f Yeast Fitness Data Category p-value In Category from Cluster k f Published Complexes Category p-value In Category from Cluster k f