Input Cluster (n=199) YAL028W YAL029C MYO4 YAL034C FUN19 YAL068C YBL081W YBL082C RHK1 YBL086C YBR018C GAL7 YBR026C MRF1' YBR037C SCO1 YBR038W CHS2 YBR066C NRG2 YBR126C TPS1 YBR150C TBS1 YBR151W APD1 YBR158W CST13 YBR205W KTR3 YBR218C PYC2 YCL049C YCR010C ADY2 YCR018C SRD1 YCR104W PAU3 YDL019C OSH2 YDL022W GPD1 YDL024C DIA3 YDL078C MDH3 YDL111C RRP42 YDL182W LYS20 YDL204W RTN2 YDL218W YDL241W YDR012W RPL4B YDR034C-A YDR034W-B YDR043C NRG1 YDR074W TPS2 YDR111C YDR188W CCT6 YDR258C HSP78 YDR284C DPP1 YDR402C DIT2 YDR403W DIT1 YDR406W PDR15 YDR435C PPM1 YDR490C PKH1 YDR492W YEL013W VAC8 YEL040W UTR2 YEL062W NPR2 YEL063C CAN1 YER011W TIR1 YER028C YER048C CAJ1 YER091C MET6 YER092W IES5 YER109C FLO8 YER146W LSM5 YER168C CCA1 YER169W RPH1 YFL067W YFL068W YGL012W ERG4 YGL013C PDR1 YGL166W CUP2 YGL167C PMR1 YGL179C YGL226C-A OST5 YGL259W YPS5 YGR052W YGR067C YGR088W CTT1 YGR125W YGR130C YGR194C XKS1 YGR195W SKI6 YGR231C PHB2 YGR232W NAS6 YGR237C YHL002W HSE1 YHL017W YHL019C APM2 YHR031C RRM3 YHR032W YHR033W YHR087W YHR097C YHR156C LIN1 YHR157W REC104 YHR161C YAP1801 YIL001W YIL002C INP51 YIL029C YIL089W YIL099W SGA1 YIL101C XBP1 YIL144W TID3 YIL176C YIR013C GAT4 YIR014W YIR035C YIR039C YPS6 YIR041W YJL036W SNX4 YJL037W YJL048C YJL076W NET1 YJL223C PAU1 YJR012C YJR015W YJR036C HUL4 YJR058C APS2 YJR115W YJR148W BAT2 YJR150C DAN1 YKL035W UGP1 YKL090W CUE2 YKR066C CCP1 YKR076W ECM4 YKR098C UBP11 YKR099W BAS1 YLL025W YLL026W HSP104 YLR012C YLR013W GAT3 YLR018C POM34 YLR019W PSR2 YLR023C YLR054C YLR163C MAS1 YLR164W YLR174W IDP2 YLR178C TFS1 YLR189C UGT51 YLR206W ENT2 YLR227C ADY4 YLR258W GSY2 YLR262C YPT6 YLR263W RED1 YLR348C DIC1 YLR408C YLR421C RPN13 YLR454W YLR461W PAU4 YML003W YML004C GLO1 YML035C AMD1 YML082W YML083C YML100W TSL1 YML101C CUE4 YML103C NUP188 YML121W GTR1 YMR084W YMR105C PGM2 YMR124W YMR165C SMP2 YMR182C RGM1 YMR251W-A HOR7 YMR261C TPS3 YMR302C PRP12 YMR319C FET4 YNL029C KTR5 YNL068C FKH2 YNL160W YGP1 YNL193W YNL194C YNL267W PIK1 YNR060W FRE4 YOL048C YOL052C-A DDR2 YOL154W ZPS1 YOL158C ENB1 YOR009W TIR4 YOR113W AZF1 YOR185C GSP2 YOR186W YOR226C ISU2 YOR227W YOR285W YOR311C HSD1 YOR349W CIN1 YOR382W FIT2 YPL021W ECM23 YPL058C PDR12 YPL074W YTA6 YPL109C YPL111W CAR1 YPL116W HOS3 YPL117C IDI1 YPL189W GUP2 YPL230W YPL248C GAL4 YPR030W CSR2 YPR091C YPR138C MEP3 YPR145W ASN1 YPR158W YPR184W GDB1 YPR185W APG13 Genes Not Found: YML100W-A MIPS Functional Classification Category p-value In Category from Cluster k f metabolism of energy reserves (glycogen, trehalose) 1.5697e-05 TPS1 TPS2 UGP1 GSY2 TSL1 PGM2 TPS3 GDB1 8 37 C-compound and carbohydrate utilization 2.33787e-05 RHK1 GAL7 CHS2 TPS1 KTR3 PYC2 GPD1 MDH3 LYS20 TPS2 OST5 XKS1 SGA1 UGP1 YLR164W IDP2 GSY2 TSL1 PGM2 TPS3 KTR5 GDB1 22 261 C-compound and carbohydrate metabolism 0.000256107 RHK1 YBL086C GAL7 CHS2 TPS1 KTR3 PYC2 ADY2 GPD1 MDH3 LYS20 NRG1 TPS2 OST5 XKS1 SGA1 UGP1 YLR164W IDP2 GSY2 DIC1 TSL1 PGM2 TPS3 KTR5 GAL4 GDB1 27 415 CELL RESCUE, DEFENSE AND VIRULENCE 0.000481221 TPS1 PAU3 GPD1 TPS2 HSP78 DIT2 TIR1 PDR1 CTT1 YHR032W PAU1 YJR015W CCP1 HSP104 PAU4 HOR7 YGP1 DDR2 ENB1 TIR4 20 278 METABOLISM 0.000644342 RHK1 YBL086C GAL7 CHS2 TPS1 KTR3 PYC2 ADY2 OSH2 GPD1 DIA3 MDH3 LYS20 NRG1 TPS2 YDR111C DPP1 NPR2 CAN1 MET6 ERG4 OST5 XKS1 SKI6 YHR033W INP51 SGA1 YIR035C BAT2 UGP1 BAS1 GAT3 YLR164W IDP2 UGT51 GSY2 DIC1 GLO1 AMD1 YML082W TSL1 GTR1 PGM2 TPS3 KTR5 PIK1 ISU2 CAR1 IDI1 GAL4 ASN1 GDB1 52 1066 stress response 0.00126358 TPS1 PAU3 GPD1 TPS2 HSP78 TIR1 CTT1 PAU1 HSP104 PAU4 HOR7 YGP1 DDR2 TIR4 14 175 MIPS Phenotypes Category p-value In Category from Cluster k f MIPS Subcellular Localization Category p-value In Category from Cluster k f MIPS Protein Complexes Category p-value In Category from Cluster k f Alpha, alpha-trehalose-phosphate synthase 9.87228e-07 TPS1 TPS2 TSL1 TPS3 4 4 MIPS Protein Classes Category p-value In Category from Cluster k f Cys2His2 zinc-finger 3.48283e-05 NRG2 NRG1 YER028C RPH1 YGR067C RGM1 AZF1 YPL230W 8 41 Zinc-coordinating DNA-binding domains 0.000132229 NRG2 TBS1 SRD1 NRG1 YER028C RPH1 PDR1 YGR067C RGM1 AZF1 YPL230W GAL4 12 107 Transcription factors 0.000623506 NRG2 TBS1 SRD1 NRG1 YER028C RPH1 PDR1 CUP2 YGR067C BAS1 RGM1 FKH2 AZF1 YPL230W GAL4 15 182 HSP100/Clp family 0.00294706 HSP78 HSP104 2 3 GO Molecular Function Category p-value In Category from Cluster k f alpha,alpha-trehalose-phosphate synthase (UDP-forming) [GO:0003825] 3.1551e-05 TPS1 TSL1 TPS3 3 3 transferase, transferring hexosyl groups [GO:0016758] 3.71858e-05 CHS2 TPS1 KTR3 OST5 UGT51 GSY2 TSL1 TPS3 KTR5 GDB1 10 66 glucosyltransferase [GO:0046527] 4.86587e-05 TPS1 UGT51 GSY2 TSL1 TPS3 5 14 transferase, transferring glycosyl groups [GO:0016757] 0.000197129 CHS2 TPS1 KTR3 OST5 UGT51 GSY2 TSL1 TPS3 KTR5 GDB1 10 80 transcriptional repressor [GO:0016564] 0.00430951 NRG2 NRG1 RPH1 3 11 GO Biological Process Category p-value In Category from Cluster k f trehalose biosynthesis [GO:0005992] 0.000123242 TSL1 PGM2 TPS3 3 4 disaccharide biosynthesis [GO:0046351] 0.000123242 TSL1 PGM2 TPS3 3 4 response to stress [GO:0006950] 0.000175981 CHS2 TPS1 GPD1 TPS2 HSP78 TIR1 CUP2 CTT1 XBP1 CCP1 HSP104 PSR2 TSL1 HOR7 TPS3 YGP1 DDR2 17 199 carbohydrate metabolism [GO:0005975] 0.000216393 GAL7 TPS1 PYC2 MDH3 NRG1 TPS2 XKS1 UGP1 IDP2 GSY2 TSL1 PGM2 TPS3 GAL4 GDB1 15 165 trehalose metabolism [GO:0005991] 0.00100443 TSL1 PGM2 TPS3 3 7 energy reserve metabolism [GO:0006112] 0.00228972 GSY2 TSL1 PGM2 TPS3 GDB1 5 30 galactose metabolism [GO:0006012] 0.00229957 GAL7 PGM2 GAL4 3 9 invasive growth [GO:0007125] 0.0038611 NRG2 DIA3 NRG1 FLO8 4 21 disaccharide metabolism [GO:0005984] 0.00430951 TSL1 PGM2 TPS3 3 11 colony morphology [GO:0007149] 0.00460355 NRG2 DIA3 NRG1 FLO8 4 22 GO Cellular Component Category p-value In Category from Cluster k f alpha, alpha-trehalose-phosphate synthase complex (UDP-forming) [GO:0005946] 9.87228e-07 TPS1 TPS2 TSL1 TPS3 4 4 SMART Domains Category p-value In Category from Cluster k f ZnF_C2H2 0.000153131 NRG2 NRG1 YER028C RPH1 YGR067C RGM1 AZF1 YPL230W 8 50 ZnF_GATA 0.000178265 SRD1 GAT4 GAT3 ECM23 4 10 PFam-A Domains Category p-value In Category from Cluster k f PF00660 (SRP1_TIP1) 1.43678e-08 YAL068C PAU3 TIR1 YIL176C YIR041W PAU1 DAN1 YLL025W PAU4 TIR4 10 30 PF00982 (Glyco_transf_20) 9.87228e-07 TPS1 TPS2 TSL1 TPS3 4 4 PF02358 (Trehalose_PPase) 3.1551e-05 TPS2 TSL1 TPS3 3 3 PF00096 (zf-C2H2) 4.18653e-05 NRG2 NRG1 YER028C RPH1 YGR067C RGM1 AZF1 YPL230W 8 42 PF00320 (GATA) 0.000273193 SRD1 GAT4 GAT3 ECM23 4 11 PF02809 (UIM) 0.00294706 HSE1 ENT2 2 3 Yeast Two Hybrid - Uetz Category p-value In Category from Cluster k f Yeast Two Hybrid - Ito (core) Category p-value In Category from Cluster k f Yeast Two Hybrid - Ito (full) Category p-value In Category from Cluster k f Synthetic Genetic Array Analysis Category p-value In Category from Cluster k f MDS Proteomics Complexes Category p-value In Category from Cluster k f YDR128W 0.00430951 CCT6 NPR2 YHR033W 3 11 Cellzome Complexes Category p-value In Category from Cluster k f YBR126C (TPS1) 0.00132964 TPS1 TPS2 TSL1 TPS3 4 16 YNL232W (CSL4) 0.00430951 RRP42 SKI6 YIR035C 3 11 Proteome Localization--Observed Category p-value In Category from Cluster k f Proteome Localization--Predicted+Observed Category p-value In Category from Cluster k f Deletions Consortium (Essentiality, Morphology) Category p-value In Category from Cluster k f Morphology - WT 5.38466e-07 YAL028W MYO4 FUN19 YAL068C YBL081W RHK1 YBL086C GAL7 MRF1' SCO1 CHS2 NRG2 TBS1 KTR3 YCL049C ADY2 OSH2 LYS20 RTN2 YDL218W YDL241W NRG1 TPS2 YDR111C HSP78 DPP1 DIT2 DIT1 PDR15 PPM1 VAC8 UTR2 NPR2 CAN1 TIR1 YER028C MET6 IES5 PDR1 OST5 YPS5 YGR052W CTT1 YGR125W YGR130C XKS1 PHB2 NAS6 YGR237C HSE1 YHL017W APM2 YHR032W YHR033W YHR087W YHR097C LIN1 REC104 YAP1801 YIL001W INP51 YIL089W SGA1 GAT4 YIR014W YIR035C YPS6 SNX4 YJL037W YJL048C YJR015W HUL4 APS2 YJR115W BAT2 DAN1 CUE2 CCP1 ECM4 UBP11 BAS1 YLL025W HSP104 YLR012C GAT3 POM34 PSR2 YLR023C YLR054C YLR164W IDP2 TFS1 UGT51 ENT2 ADY4 GSY2 YPT6 RED1 DIC1 YLR408C RPN13 YLR454W PAU4 YML003W GLO1 AMD1 YML082W YML083C TSL1 CUE4 NUP188 GTR1 YMR084W PGM2 YMR124W RGM1 HOR7 TPS3 PRP12 FET4 FKH2 YGP1 YNL193W YNL194C FRE4 YOL048C ENB1 TIR4 AZF1 GSP2 YOR186W ISU2 YOR227W YOR285W HSD1 FIT2 ECM23 PDR12 YTA6 CAR1 GUP2 YPL230W GAL4 CSR2 YPR091C MEP3 ASN1 YPR158W GDB1 APG13 150 3689 Yeast Fitness Data Category p-value In Category from Cluster k f Published Complexes Category p-value In Category from Cluster k f