Input Cluster (n=186) YAL001C TFC3 YAR027W UIP3 YBL030C PET9 YBL104C YBR001C NTH2 YBR054W YRO2 YBR055C PRP6 YBR056W YBR081C SPT7 YBR142W MAK5 YBR179C FZO1 YBR180W DTR1 YBR249C ARO4 YBR286W APE3 YCR004C YCP4 YCR026C YCR037C PHO87 YDL004W ATP16 YDL005C MED2 YDL028C MPS1 YDL046W YDL077C VAM6 YDL117W CYK3 YDL139C SCM3 YDL223C HBT1 YDR023W SES1 YDR032C PST2 YDR033W MRH1 YDR040C ENA1 YDR071C YDR076W RAD55 YDR132C YDR141C DOP1 YDR161W TCI1 YDR189W SLY1 YDR206W EBS1 YDR240C SNU56 YDR248C YDR317W YDR322W MRPL35 YDR380W ARO10 YDR382W RPP2B YDR414C ERD1 YDR419W RAD30 YDR434W GPI17 YDR464W SPP41 YDR524C AGE1 YEL009C GCN4 YEL027W CUP5 YEL042W GDA1 YER041W YEN1 YER045C ACA1 YFL011W HXT10 YFR001W LOC1 YFR011C YFR012W YGL001C ERG26 YGL008C PMA1 YGL031C RPL24A YGL033W HOP2 YGL036W YGL037C PNC1 YGL113W SLD3 YGL205W POX1 YGL263W COS12 YGR052W YGR059W SPR3 YGR074W SMD1 YGR163W GTR2 YGR187C HGH1 YGR189C CRH1 YGR199W PMT6 YGR218W CRM1 YGR253C PUP2 YGR273C YGR285C ZUO1 YHR001W OSH7 YHR077C NMD2 YHR078W YHR079C IRE1 YHR085W IPI1 YHR146W CRP1 YHR216W IMD2 YIL045W PIG2 YIL060W YIL061C SNP1 YIL106W MOB1 YIL107C PFK26 YIL116W HIS5 YIR007W YJR001W YJR055W HIT1 YJR094C IME1 YKL014C YKL048C ELM1 YKL049C CSE4 YKL061W YKL072W STB6 YKL149C DBR1 YKL188C PXA2 YKL208W CBT1 YKR014C YPT52 YKR089C YKR090W PXL1 YLL015W BPT1 YLL042C APG10 YLL054C YLR018C POM34 YLR019W PSR2 YLR083C EMP70 YLR135W SLX4 YLR166C SEC10 YLR167W RPS31 YLR191W PEX13 YLR195C NMT1 YLR196W PWP1 YLR238W YLR346C YLR354C TAL1 YLR404W YLR411W CTR3 YLR456W YML035C AMD1 YML066C SMA2 YML073C RPL6A YML092C PRE8 YML118W NGL3 YMR023C MSS1 YMR024W MRPL3 YMR132C YMR133W REC114 YMR200W ROT1 YMR203W TOM40 YMR204C YMR234W RNH1 YMR257C PET111 YMR284W YKU70 YNL006W LST8 YNL007C SIS1 YNL014W HEF3 YNL058C YNL082W PMS1 YNL085W MKT1 YNL185C MRPL19 YNL308C KRI1 YNL323W LEM3 YNL325C FIG4 YOL023W IFM1 YOL032W YOL033W MSE1 YOL041C NOP12 YOL054W PSH1 YOL055C THI20 YOL088C MPD2 YOL104C NDJ1 YOL123W HRP1 YOR001W RRP6 YOR012W YOR018W ROD1 YOR046C DBP5 YOR058C ASE1 YOR114W YOR128C ADE2 YOR177C MPC54 YOR279C RFM1 YOR308C SNU66 YPL016W SWI1 YPL020C ULP1 YPL054W LEE1 YPL065W VPS28 YPL088W YPL108W YPL110C YPL117C IDI1 YPL128C TBF1 YPL140C MKK2 YPL178W CBC2 YPL203W TPK2 YPL226W NEW1 YPL227C ALG5 YPL266W DIM1 YPR001W CIT3 YPR035W GLN1 YPR036W VMA13 YPR104C FHL1 YPR155C NCA2 Genes Not Found: YBL005W-A YBL005W-B YBR012W-A YBR012W-B YCL019W YCL020W YER138C YER160C YJL113W YJL114W YJR028W YJR029W YMR050C YMR051C MIPS Functional Classification Category p-value In Category from Cluster k f transport mechanism 0.000277323 ATP16 ENA1 CUP5 PMA1 PXA2 BPT1 HEF3 NEW1 VMA13 9 73 MIPS Phenotypes Category p-value In Category from Cluster k f MIPS Subcellular Localization Category p-value In Category from Cluster k f chromosome structure 0.00427367 HOP2 ZUO1 CSE4 NDJ1 4 23 MIPS Protein Complexes Category p-value In Category from Cluster k f mRNA splicing 0.0049442 PRP6 MAK5 SMD1 SNP1 CBC2 5 38 MIPS Protein Classes Category p-value In Category from Cluster k f GO Molecular Function Category p-value In Category from Cluster k f binding [GO:0005488] 0.000276076 TFC3 PRP6 MAK5 FZO1 ATP16 MED2 VAM6 ENA1 RAD55 SLY1 SNU56 GCN4 CUP5 YEN1 ACA1 LOC1 PMA1 RPL24A SLD3 SMD1 GTR2 CRM1 OSH7 NMD2 IRE1 CRP1 SNP1 IME1 CSE4 DBR1 PXA2 YPT52 SEC10 PEX13 RPL6A MSS1 RNH1 YKU70 HEF3 PMS1 IFM1 NOP12 HRP1 RRP6 DBP5 ASE1 SNU66 SWI1 TBF1 CBC2 VMA13 FHL1 52 1106 RNA binding [GO:0003723] 0.00129064 PRP6 MAK5 SNU56 LOC1 RPL24A SMD1 IRE1 SNP1 DBR1 RPL6A RNH1 NOP12 HRP1 RRP6 DBP5 SNU66 CBC2 17 253 mRNA binding [GO:0003729] 0.00205569 PRP6 SNU56 LOC1 SMD1 SNP1 HRP1 SNU66 CBC2 8 78 hydrolase [GO:0016787] 0.00406508 NTH2 MAK5 FZO1 APE3 ATP16 ENA1 GPI17 CUP5 GDA1 YEN1 PMA1 PNC1 GTR2 PUP2 IRE1 DBR1 PXA2 YPT52 PSR2 AMD1 PRE8 RNH1 HEF3 PMS1 FIG4 RRP6 ULP1 VMA13 28 561 GO Biological Process Category p-value In Category from Cluster k f cell growth and/or maintenance [GO:0008151] 0.00301457 TFC3 PET9 NTH2 PRP6 SPT7 MAK5 FZO1 ARO4 APE3 PHO87 ATP16 MED2 MPS1 VAM6 CYK3 HBT1 SES1 ENA1 RAD55 DOP1 SLY1 EBS1 SNU56 MRPL35 ARO10 RPP2B ERD1 RAD30 GPI17 SPP41 AGE1 GCN4 CUP5 GDA1 ACA1 HXT10 LOC1 ERG26 PMA1 RPL24A HOP2 PNC1 SLD3 POX1 SPR3 SMD1 PMT6 CRM1 PUP2 ZUO1 OSH7 NMD2 IRE1 IMD2 SNP1 MOB1 PFK26 HIS5 HIT1 IME1 ELM1 CSE4 DBR1 PXA2 CBT1 YPT52 BPT1 APG10 POM34 PSR2 EMP70 SLX4 SEC10 RPS31 PEX13 NMT1 TAL1 CTR3 AMD1 SMA2 RPL6A PRE8 MSS1 MRPL3 REC114 ROT1 TOM40 RNH1 PET111 YKU70 LST8 SIS1 HEF3 PMS1 MRPL19 KRI1 FIG4 IFM1 MSE1 NOP12 PSH1 THI20 MPD2 NDJ1 HRP1 RRP6 DBP5 ASE1 ADE2 MPC54 SNU66 SWI1 ULP1 VPS28 YPL088W IDI1 TBF1 MKK2 CBC2 TPK2 ALG5 DIM1 CIT3 GLN1 VMA13 FHL1 NCA2 127 3657 GO Cellular Component Category p-value In Category from Cluster k f commitment complex [GO:0000243] 0.00059541 SNU56 SMD1 SNP1 CBC2 4 14 cell [GO:0005623] 0.0048966 TFC3 UIP3 PET9 PRP6 SPT7 MAK5 FZO1 APE3 PHO87 ATP16 MED2 MPS1 VAM6 HBT1 SES1 MRH1 ENA1 RAD55 SLY1 EBS1 SNU56 MRPL35 RPP2B ERD1 RAD30 GPI17 GCN4 CUP5 GDA1 YEN1 ACA1 HXT10 LOC1 ERG26 PMA1 RPL24A HOP2 SLD3 POX1 SPR3 SMD1 GTR2 PMT6 CRM1 PUP2 ZUO1 NMD2 IRE1 SNP1 MOB1 PFK26 HIS5 IME1 ELM1 CSE4 DBR1 PXA2 YPT52 APG10 POM34 PSR2 EMP70 SLX4 SEC10 RPS31 PEX13 NMT1 TAL1 CTR3 RPL6A PRE8 MSS1 MRPL3 TOM40 RNH1 PET111 YKU70 SIS1 HEF3 PMS1 MRPL19 KRI1 LEM3 FIG4 IFM1 MSE1 NOP12 MPD2 NDJ1 HRP1 RRP6 ROD1 DBP5 ASE1 MPC54 RFM1 SNU66 SWI1 ULP1 VPS28 IDI1 TBF1 CBC2 TPK2 ALG5 DIM1 CIT3 GLN1 VMA13 FHL1 110 3106 SMART Domains Category p-value In Category from Cluster k f PFam-A Domains Category p-value In Category from Cluster k f PF01036 (Bac_rhodopsin) 0.00257732 YRO2 MRH1 2 3 Yeast Two Hybrid - Uetz Category p-value In Category from Cluster k f Yeast Two Hybrid - Ito (core) Category p-value In Category from Cluster k f Yeast Two Hybrid - Ito (full) Category p-value In Category from Cluster k f YGR092W (DBF2) 0.00257732 MOB1 YKL061W 2 3 Synthetic Genetic Array Analysis Category p-value In Category from Cluster k f MDS Proteomics Complexes Category p-value In Category from Cluster k f YDR386W (MUS81) 0.0019789 LOC1 PWP1 MKT1 KRI1 NOP12 5 31 Cellzome Complexes Category p-value In Category from Cluster k f YFL017W-A (SMX2) 0.000100998 PRP6 SNU56 SMD1 SNP1 SNU66 5 17 YBR119W (MUD1) 0.00189357 SNU56 SNP1 CBC2 3 9 YGR074W (SMD1) 0.00355975 PRP6 SNU56 SMD1 3 11 YGR091W (PRP31) 0.00361304 PRP6 MRPL35 MRPL3 SNU66 4 22 Proteome Localization--Observed Category p-value In Category from Cluster k f Proteome Localization--Predicted+Observed Category p-value In Category from Cluster k f Deletions Consortium (Essentiality, Morphology) Category p-value In Category from Cluster k f Yeast Fitness Data Category p-value In Category from Cluster k f Published Complexes Category p-value In Category from Cluster k f