Rpn4-avgv9v11-0.35bgdsub_lteq600.txt_200 Significant Conditions: condindex ind/rep TFexpr area activator/repressor 1. Cell cycle: Expression in response to Cln3p (set 1)(1) 2 repressed -0.69 0.105381348020911 0.0727131301344286 -0.0645513759905656 5. Expression during the cell cycle (alpha factor arrest and release)(4) 9 repressed 0.01 0.101330283793876 -0.00101330283793876 6. Expression during the cell cycle (cdc15 arrest and release)(24) 47 repressed 0.49 0.109814693801344 -0.0538091999626586 8. Expression during the cell cycle (cell size selection and release)(7) 71 induced -0.76 0.107182598954444 -0.0814587752053774 8. Expression during the cell cycle (cell size selection and release)(10) 74 induced -0.09 0.0966714899178491 -0.00870043409260642 9. Sporulation: time course: t0,t0.5,t2,t5,t7,t9,t11.5(2) 80 repressed 0.515 0.103290235250187 -0.0531944711538463 9. Sporulation: time course: t0,t0.5,t2,t5,t7,t9,t11.5(3) 81 repressed -0.903 0.0991187453323376 0.0895042270351009 10. Sporulation: Ectopic expression of Ndt80; deletion of Ndt80: early, mid,(2) 87 repressed 0.059 0.116456310679612 -0.00687092233009711 10. Sporulation: Ectopic expression of Ndt80; deletion of Ndt80: early, mid,(3) 88 repressed 1.322 0.136966019417476 -0.181069077669903 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(6) 94 repressed 1.183 0.128166542195668 -0.151621019417475 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(7) 95 repressed 1 0.125311799850635 -0.125311799850635 12. Expression in tup1-deleted cells(1) 96 induced -0.201 0.105913461538462 -0.0212886057692309 20. Fink: Expression in haploid ste12 deletion mutant(1) 104 repressed 0 0.096465646004481 0 21. Fink: Expression in haploid ste7 deletion mutant(1) 105 repressed 0 0.096001213592233 0 22. Fink: Expression in haploid high copyt TEC1(1) 106 repressed 0 0.0959153286034354 0 27. Young: Expression in rpb1 mutant(1) 111 repressed -0.239 0.144932318894698 0.0346388242158328 28. Young: Expression in srb4 mutant(1) 112 repressed 1.032 0.135065814040329 -0.13938792008962 29. Young: Expression in srb5 mutant(1) 113 repressed -0.705 0.104950989544436 0.0739904476288274 30. Young: Expression in med6 mutant(1) 114 repressed 0.122 0.132618091859597 -0.0161794072068708 32. Young: Expression in swi2 mutant(1) 116 repressed 1.135 0.128824682598954 -0.146216014749813 33. Young: Expression in taf145 mutant(1) 117 repressed 0 0.111165982076176 0 34. Young: Expression in taf17 mutant(1) 118 repressed 0 0.133065253920836 0 35. Young: Expression in tfa1 mutant(1) 119 repressed 0.95 0.115342606422704 -0.109575476101569 36. Young: Expression in kin28 mutant(1) 120 repressed 0 0.138627707244212 0 37. Young: Expression in gcn5 mutant(1) 121 repressed 0 0.135418689320388 0 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(6) 127 repressed 0.816 0.102389376400299 -0.083549731142644 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(7) 128 repressed 0.053 0.101768110530246 -0.00539370985810304 43. Young: Expression in fcp1 deletion mutant(1) 133 repressed 0.721 0.124559372666169 -0.0898073076923078 44. Expression in snf2 mutant cells in YPD(1) 134 repressed 0.697 0.106666822255414 -0.0743467751120236 45. Expression in snf2 mutant cells in minimal medium(1) 135 repressed 0.69 0.109911314413742 -0.075838806945482 47. Expression in swi1 mutant cells in minimal medium(1) 137 repressed 0.179 0.098803211351755 -0.0176857748319641 48. Expression in response to 0.15,0.5,1.5,5,15.8,50,158,500 nM alpha-factor(4) 141 induced 0.008 0.104897778192681 0.000839182225541448 48. Expression in response to 0.15,0.5,1.5,5,15.8,50,158,500 nM alpha-factor(5) 142 induced 0.034 0.105432692307692 0.00358471153846153 49. Expression in response to 50 nM alpha-factor: 0,15,30,45,60,90,120 min(3) 148 induced 0.055 0.106467513069455 0.00585571321882002 50. Expression in response to 50 nM alpha-factor in bni1 deletion mutant: 60,90,120 min(1) 153 induced 0.087 0.113419529499627 0.00986749906646755 55. Expression in response to overproduction of Ste11p(1) 160 induced 0.098 0.100928864824496 0.00989102875280061 79. Expression in fus3 deletion mutant cells(1) 185 induced 0.033 0.131223861090366 0.00433038741598208 80. Expression in fus3 tec1 double deletion mutant cells(1) 186 induced -0.03 0.102990104555639 -0.00308970313666917 82. Expression in response to alpha-factor in fus3 deletion mutant cells(1) 188 repressed -0.052 0.10130787901419 0.00526800970873788 84. Expression in rst1 rst2 tec1 triple deletion mutant cells(1) 190 repressed 0.092 0.0977637229275579 -0.00899426250933533 88. Expression in response to DNA damage by MMS(1) 194 repressed 0 0.123788741598208 0 90. Expression in his3 mutant cells(1) 196 repressed 1.031 0.116196321882001 -0.119798407860343 98. Church: mating type A glucose 30 C vs. mating type ALPHA glactose 30 C(1) 204 repressed 0 0.109994398805078 0 100. Young: Expression in spt20 deletion mutant(1) 206 repressed 0 0.164588778939507 0 102. Young: Expression in taf25_2 deletion mutant(1) 208 repressed 0 0.163375186706497 0 103. Young: Expression in taf60 deletion mutant(1) 209 repressed 0 0.139110343539955 0 104. Young: Expression in taf61 deletion mutant(1) 210 repressed 0 0.118623973114264 0 105. Young: Expression in taf90 deletion mutant(1) 211 repressed 0 0.117284353995519 0 106. Young: Expression in tsm1 deletion mutant(1) 212 repressed 0 0.134978061986557 0 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(2) 214 repressed 1.2 0.131570201643017 -0.15788424197162 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(3) 215 repressed 0.18 0.14505927931292 -0.0261106702763256 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(4) 216 repressed -0.4 0.145792569081404 0.0583170276325616 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(7) 219 repressed 0.48 0.102632094846901 -0.0492634055265125 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(8) 220 repressed 0.33 0.15496499253174 -0.0511384475354742 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(10) 222 repressed -0.12 0.133209017923824 0.0159850821508589 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(13) 225 repressed 1.26 0.0992573749066468 -0.125064292382375 111. Rosetta 2000: Expression in aep2 deletion mutant (1) 230 repressed 0.545 0.143637042569081 -0.0782821882001492 117. Rosetta 2000: Expression in ard1 deletion mutant (1) 236 repressed 0.233 0.104385268857356 -0.0243217676437639 130. Rosetta 2000: Expression in cat8 deletion mutant (1) 249 repressed 0.11 0.107217606422704 -0.0117939367064974 134. Rosetta 2000: Expression in cka2 deletion mutant (1) 253 repressed 0.578 0.112424383868559 -0.0649812938760271 163. Rosetta 2000: Expression in erg4 (haploid **7) deletion mutant (1) 282 repressed 0.488 0.106324682598954 -0.0518864451082896 165. Rosetta 2000: Expression in erg6 deletion mutant (1) 284 repressed 0.226 0.117991038088125 -0.0266659746079163 173. Rosetta 2000: Expression in fus3 (haploid) deletion mutant (1) 292 induced 0.11 0.131223861090366 0.0144346247199403 181. Rosetta 2000: Expression in gyp1 deletion mutant (1) 300 induced 0.023 0.112441187453323 0.00258614731142643 197. Rosetta 2000: Expression in isw2 deletion mutant (1) 316 induced 0.106 0.104542102315161 0.0110814628454071 207. Rosetta 2000: Expression in med2 (haploid) deletion mutant (1) 326 repressed 0.083 0.10442354368932 -0.00866715412621356 211. Rosetta 2000: Expression in msu1 deletion mutant (1) 330 repressed 0.548 0.0996326549663928 -0.0545986949215833 212. Rosetta 2000: Expression in npr2 deletion mutant (1) 331 induced 0.123 0.113452669902913 0.0139546783980583 214. Rosetta 2000: Expression in nta1 deletion mutant (1) 333 induced 0.053 0.110465832710978 0.00585468913368183 241. Rosetta 2000: Expression in rpd3 (haploid) deletion mutant (1) 360 repressed 0.186 0.0976577669902913 -0.0181643446601942 263. Rosetta 2000: Expression in she4 deletion mutant (1) 382 repressed 1.026 0.115829910380881 -0.118841488050784 291. Rosetta 2000: Expression in ubp8 deletion mutant (1) 410 induced 0.13 0.0990944734876774 0.0128822815533981 298. Rosetta 2000: Expression in vps8 deletion mutant (1) 417 repressed 0.352 0.104120145631068 -0.0366502912621359 307. Rosetta 2000: Expression in yea4 deletion mutant (1) 426 induced 0.057 0.107448188946975 0.00612454676997758 312. Rosetta 2000: Expression in yel028w deletion mutant (1) 431 repressed -0.06 0.103376587005228 0.00620259522031368 324. Rosetta 2000: Expression in yer044c (haploid) deletion mutant (1) 443 repressed 0.674 0.114604648991785 -0.0772435334204631 325. Rosetta 2000: Expression in yer050c deletion mutant (1) 444 repressed 0.402 0.165640403286034 -0.0665874421209857 329. Rosetta 2000: Expression in yer083c deletion mutant (1) 448 repressed 0.721 0.11910427557879 -0.0858741826923076 339. Rosetta 2000: Expression in yhr031c deletion mutant (1) 458 repressed -0.017 0.104067401045556 0.00176914581777445 346. Rosetta 2000: Expression in yml005w deletion mutant (1) 465 induced -0.173 0.115630134428678 -0.0200040132561613 348. Rosetta 2000: Expression in yml018c deletion mutant (1) 467 induced 0.106 0.11022498132935 0.0116838480209111 371. Rosetta 2000: Expression in ymr269w deletion mutant (1) 490 induced 0.253 0.110054611650485 0.0278438167475727 373. Rosetta 2000: Expression in ymr293c deletion mutant (1) 492 repressed 0.336 0.11227501867065 -0.0377244062733384 382. Rosetta 2000: Expression in yor080w (**3) deletion mutant (1) 501 repressed 0.213 0.100360343539955 -0.0213767531740104 387. Rosetta 2000: Expression in cells with ERG11 under tet promoter(1) 506 repressed 0.857 0.109122479462285 -0.0935179648991782 392. Rosetta 2000: Expression in cells with PMA1 under tet promoter(1) 511 repressed 0.884 0.105271657953697 -0.0930601456310682 395. Rosetta 2000: Expression in response to 2-deoxy-D-glucose(1) 514 induced -0.316 0.110731889469754 -0.0349912770724423 399. Rosetta 2000: Expression in response to FR901,228(1) 518 repressed 0.236 0.108309839432412 -0.0255611221060492 401. Rosetta 2000: Expression in response to HU(1) 520 induced 0.249 0.0996541262135922 0.0248138774271845 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(1) 527 repressed 0.62 0.0992387042569081 -0.061527996639283 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(2) 528 repressed 0.12 0.118284167289022 -0.0141941000746826 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(11) 537 induced -0.02 0.0966397498132935 -0.00193279499626587 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(2) 541 repressed 0.01 0.111573002240478 -0.00111573002240478 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(6) 545 induced 0.16 0.100241784914115 0.0160386855862584 Expression in PDR3-7 mutant(1) 556 induced 0.176 0.0977301157580284 0.017200500373413 Starvation in SK1 alpha alpha cells: 2h,4h,6h,8h(3) 566 induced -0.462 0.0984596713965646 -0.0454883681852128 Starvation in SK1 alpha alpha cells: 2h,4h,6h,8h(4) 567 induced -1.83 0.122481329350261 -0.224140832710978 Meiosis in W303 a alpha cells: 2h,4h,6h,8h,10h,12h(5) 575 induced -1.666 0.0992830470500373 -0.165405556385362 Low-Pi vs High-Pi in WT (DBY7286)(1) 579 repressed 0.454 0.100695481702763 -0.0457157486930544 428. Expression in strain PM38 (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 585 repressed -0.02 0.139211631814787 0.00278423263629574 430. Expression in strain PM38 (wild type), glucose versus ethanol: strain was shifted from medium containing dextrose as carbon source, ammonium sulfate as nirogen source, supplemented with leucine and uracil to same medium for 30 min, compared to a shift to a medium with synthetic ethanol instead of glucose for 30 min(1) 587 repressed 1.097 0.114805825242718 -0.125941990291262 431. Expression in strain PM71 (gln3 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 588 repressed 0.595 0.116362957430919 -0.0692359596713968 432. Expression in strain MS221 in response to 30 min 50 nM treatment with rapamycin in YPD(1) 589 repressed 0.146 0.101726568334578 -0.0148520789768484 433. Expression in strain PH2 (ure2 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 590 repressed 0 0.116544062733383 0 434. Expression in strain P40-1A (gln3 ure2 double deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 591 repressed 0.725 0.117145257654966 -0.0849303117998503 439. Expression in strain Jk9-3da (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 596 repressed -0.376 0.139932785660941 0.0526147274085138 442. Expression in strain PM38 (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 599 repressed 0.454 0.107623693054518 -0.0488611566467512 443. Expression in strain YHE710 (mks1 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 600 repressed 0.811 0.117728248693055 -0.0954776096900676 444. Expression in wild type versus strain YHE710 (mks1 deletion) under steady state conditions in YPD(1) 601 induced 0.015 0.116759241971621 0.00175138862957432 445. Expression in response to 0.1% MMS for 60 min (average of 3 experiments)(1) 602 repressed 0.975 0.154934185959671 -0.151060831310679 447. Expression in response to 0.1% MMS for 30 min(1) 604 repressed 0.248 0.103809746079164 -0.0257448170276327 448. Expression in response to 0.1% MMS for 60 min(1) 605 repressed 0.162 0.12274785287528 -0.0198851521657954 449. Expression in response to 0.1% MMS for 60 min(1) 606 repressed 0.937 0.144853902165795 -0.13572810632935 450. Expression in response to low MNNG (8 microgram/ml) for 60 min(1) 607 repressed 0.071 0.0988610903659447 -0.00701913741598207 451. Expression in response to BCNU (200 micromolar) for 60 min(1) 608 repressed 0.741 0.156422703510082 -0.115909223300971 452. Expression in response to low 4NQO (2 microgram/ml) for 60 min(1) 609 repressed -0.469 0.112220407020164 0.0526313708924569 454. Expression in response to tBuOOH (5mM) for 60 min(1) 611 repressed 1.493 0.147327763256161 -0.219960350541448 455. Expression in response to high MNNG (27 microgram/ml) for 60 min(1) 612 repressed 1.622 0.111455843913368 -0.180781378827483 457. Expression of G1 arrested cells (with alpha factor) in response to 0.1% MMS for 60 min(1) 614 repressed 0.901 0.0997358103061987 -0.089861965085885 458. Expression of S arrested cells (with hydroxyurea) in response to 0.1% MMS for 60 min(1) 615 repressed 1.807 0.142085978342046 -0.256749362864077 459. Expression of G2 arrested cells (alpha nocodazole) in response to 0.1% MMS for 60 min(1) 616 repressed 0.765 0.119650858849888 -0.0915329070201643 461. Expression of rpn4 deletion in response to 0.1% MMS for 60 min(1) 618 repressed 0 0.154564507094847 0 462. Expression in response to 0.05% MMS for 60 min(1) 619 repressed 0.803 0.119665328603435 -0.0960912588685583 463. Expression in response to 0.1% MMS for 60 min(1) 620 repressed 1.799 0.14281926811053 -0.256931863330843 464. Expression in response to 0.2% MMS for 60 min(1) 621 repressed 2.775 0.14027212471994 -0.389255146097833 474. Expression in hda1 deletion(1) 631 induced -0.34 0.111372759522031 -0.0378667382374905 475. Expression in hos2 deletion(1) 632 induced -0.245 0.110314600448096 -0.0270270771097835 478. Expression in haploid cells in response to rapamycin (100nM) for: 0min,15min,30min,60min,120min(4) 641 repressed 1.185 0.129130414488424 -0.153019541168782 479. Expression in diploid cells in response to rapamycin (100nM) for: 15min,30min,90min,120min(3) 645 repressed 3.318 0.128883961911875 -0.427636985623601 479. Expression in diploid cells in response to rapamycin (100nM) for: 15min,30min,90min,120min(4) 646 repressed 1.385 0.107282953696789 -0.148586890870053 480. Expression in haploid cells deprived to amino acids in response to rapamycin for: 15min,30min,60min,90min,120min(3) 649 repressed -1.19 0.134710138162808 0.160305064413742 480. Expression in haploid cells deprived to amino acids in response to rapamycin for: 15min,30min,60min,90min,120min(5) 651 repressed 0 0.113046583271098 0 481. Expression in response to heat shock: 15,30,45,60,120 min(1) 652 repressed 0.328 0.096713498879761 -0.0317220276325616 481. Expression in response to heat shock: 15,30,45,60,120 min(5) 656 repressed 0.148 0.104918782673637 -0.0155279798356983 482. Expression in response to acid: 10,20,40,60,80,100 min(3) 659 repressed 0.073 0.0986991224794623 -0.00720503594100075 483. Expression in response to alkali: 10,20,40,60,80,100 min(2) 664 repressed -0.228 0.106777445855116 0.0243452576549665 483. Expression in response to alkali: 10,20,40,60,80,100 min(3) 665 repressed -0.339 0.114564507094847 0.0388373679051531 483. Expression in response to alkali: 10,20,40,60,80,100 min(4) 666 repressed -0.339 0.104171956684093 0.0353142933159075 483. Expression in response to alkali: 10,20,40,60,80,100 min(5) 667 repressed -0.221 0.133279499626587 0.0294547694174757 483. Expression in response to alkali: 10,20,40,60,80,100 min(6) 668 repressed -0.339 0.113986183719193 0.0386413162808064 485. Expression in response to peroxide: 10,20,40,60,120 min(1) 671 repressed 1.162 0.099758215085885 -0.115919045929798 485. Expression in response to peroxide: 10,20,40,60,120 min(2) 672 repressed 1.801 0.097856142643764 -0.176238912901419 485. Expression in response to peroxide: 10,20,40,60,120 min(3) 673 repressed 2.055 0.1387392643764 -0.285109188293502 485. Expression in response to peroxide: 10,20,40,60,120 min(4) 674 repressed 2.162 0.140849047796863 -0.304515641336818 485. Expression in response to peroxide: 10,20,40,60,120 min(5) 675 repressed 0.39 0.126385828976848 -0.0492904733009707 486. Expression in response to NaCl: 15 30 45 60 120 min(3) 678 repressed 2.421 0.109301717699776 -0.264619458551158 487. Expression in response to sorbitol: 15 30 45 90 120 min(2) 682 repressed 1.817 0.115182505601195 -0.209286612677371 488. Brown enviromental changes :Heat Shock 05 minutes hs-1(1) 686 repressed 1.42 0.099018857356236 -0.140606777445855 489. Brown enviromental changes :Heat Shock 10 minutes hs-1(1) 687 repressed 0.93 0.104735343539955 -0.0974038694921582 490. Brown enviromental changes :Heat Shock 15 minutes hs-1(1) 688 repressed 1.08 0.130899458551158 -0.141371415235251 491. Brown enviromental changes :Heat Shock 20 minutes hs-1(1) 689 repressed 1.16 0.117222740851382 -0.135978379387603 492. Brown enviromental changes :Heat Shock 30 minutes hs-1(1) 690 repressed 0.85 0.122787528005975 -0.104369398805079 493. Brown enviromental changes :Heat Shock 40 minutes hs-1(1) 691 repressed 0.58 0.103781273338312 -0.060193138536221 494. Brown enviromental changes :Heat Shock 60 minutes hs-1(1) 692 repressed 0.78 0.098675784167289 -0.0769671116504854 495. Brown enviromental changes :Heat Shock 80 minutes hs-1(1) 693 repressed 0.85 0.112908887229276 -0.0959725541448846 496. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 694 induced -0.94 0.123910100821509 -0.116475494772218 497. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 695 induced -0.86 0.12374859970127 -0.106423795743092 498. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 696 induced -0.92 0.139067401045556 -0.127942008961912 500. Brown enviromental changes :Heat Shock 015 minutes hs-2(1) 698 repressed 0.79 0.116018483943241 -0.0916546023151604 503. Brown enviromental changes :37C to 25C shock - 15 min(1) 701 induced 0.9 0.0961949215832711 0.086575429424944 504. Brown enviromental changes :37C to 25C shock - 30 min(1) 702 induced 0.53 0.114003454070202 0.0604218306572071 505. Brown enviromental changes :37C to 25C shock - 45 min(1) 703 induced 0.42 0.10297003360717 0.0432474141150114 506. Brown enviromental changes :37C to 25C shock - 60 min(1) 704 induced -0.3 0.111889002987304 -0.0335667008961912 507. Brown enviromental changes :37C to 25C shock - 90 min(1) 705 induced -0.2 0.129228435399552 -0.0258456870799104 508. Brown enviromental changes :heat shock 17 to 37, 20 minutes(1) 706 repressed 2.17 0.123759335324869 -0.268557757654966 509. Brown enviromental changes :heat shock 21 to 37, 20 minutes(1) 707 repressed 2.07 0.115798637042569 -0.239703178678118 510. Brown enviromental changes :heat shock 25 to 37, 20 minutes(1) 708 repressed 1.96 0.142672236743839 -0.279637584017924 511. Brown enviromental changes :heat shock 29 to 37, 20 minutes(1) 709 repressed 1.42 0.128610903659447 -0.182627483196415 519. Brown enviromental changes :29C +1M sorbitol to 33C + 1M sorbitol - 30 minutes(1) 717 repressed -0.45 0.112066840926064 0.0504300784167288 523. Brown enviromental changes :constant 0.32 mM H2O2 (10 min) redo(1) 721 repressed 0 0.0970243651979089 0 527. Brown enviromental changes :constant 0.32 mM H2O2 (50 min) redo(1) 725 repressed 0 0.141369025392084 0 528. Brown enviromental changes :constant 0.32 mM H2O2 (60 min) redo(1) 726 repressed 0 0.125972274085138 0 537. Brown enviromental changes :1 mM Menadione (50 min)redo(1) 735 repressed -0.89 0.0986342419716206 0.0877844753547423 548. Brown enviromental changes :2.5mM DTT 120 min dtt-1(1) 746 repressed -0.18 0.100540982076176 0.0180973767737117 549. Brown enviromental changes :2.5mM DTT 180 min dtt-1(1) 747 repressed -0.12 0.111715832710978 0.0134058999253174 550. Brown enviromental changes :dtt 000 min dtt-2(1) 748 induced -0.22 0.129108943241225 -0.0284039675130695 551. Brown enviromental changes :dtt 015 min dtt-2(1) 749 induced -0.43 0.129288181478715 -0.0555939180358474 554. Brown enviromental changes :dtt 120 min dtt-2(1) 752 repressed 0.07 0.104152352501867 -0.00729066467513069 555. Brown enviromental changes :dtt 240 min dtt-2(1) 753 repressed 0.53 0.123881628080657 -0.0656572628827482 556. Brown enviromental changes :dtt 480 min dtt-2(1) 754 induced 0.1 0.0990832710978342 0.00990832710978342 559. Brown enviromental changes :1.5 mM diamide (20 min)(1) 757 repressed 1.42 0.13459998132935 -0.191131973487677 560. Brown enviromental changes :1.5 mM diamide (30 min)(1) 758 repressed 1.36 0.114063200149365 -0.155125952203136 561. Brown enviromental changes :1.5 mM diamide (40 min)(1) 759 repressed 1.25 0.106953416728902 -0.133691770911127 562. Brown enviromental changes :1.5 mM diamide (50 min)(1) 760 repressed 0.9 0.0998763069454817 -0.0898886762509335 563. Brown enviromental changes :1.5 mM diamide (60 min)(1) 761 repressed 0.56 0.0967088312173264 -0.0541569454817028 566. Brown enviromental changes :1M sorbitol - 15 min(1) 764 repressed 1.81 0.115703883495146 -0.209424029126214 567. Brown enviromental changes :1M sorbitol - 30 min(1) 765 repressed 0.37 0.157481796116505 -0.0582682645631069 574. Brown enviromental changes :Hypo-osmotic shock - 30 min(1) 772 induced 0.07 0.0986351755041075 0.00690446228528753 578. Brown enviromental changes :aa starv 0.5 h(1) 776 repressed 0.72 0.129485623599701 -0.0932296489917847 579. Brown enviromental changes :aa starv 1 h(1) 777 repressed -0.3 0.126835324869305 0.0380505974607915 582. Brown enviromental changes :aa starv 6 h(1) 780 repressed 0.16 0.106382094846901 -0.0170211351755042 583. Brown enviromental changes :Nitrogen Depletion 30 min.(1) 781 repressed 0.54 0.141457710978342 -0.0763871639283047 584. Brown enviromental changes :Nitrogen Depletion 1 h(1) 782 repressed 0.06 0.11345640403286 -0.0068073842419716 585. Brown enviromental changes :Nitrogen Depletion 2 h(1) 783 repressed -0.14 0.13561146377894 0.0189856049290516 587. Brown enviromental changes :Nitrogen Depletion 8 h(1) 785 repressed 0.82 0.139079070201643 -0.114044837565347 588. Brown enviromental changes :Nitrogen Depletion 12 h(1) 786 repressed 1.58 0.130382748319642 -0.206004742345034 589. Brown enviromental changes :Nitrogen Depletion 1 d(1) 787 repressed 2.59 0.135050877520538 -0.349781772778193 590. Brown enviromental changes :Nitrogen Depletion 2 d(1) 788 repressed 2.35 0.135773431665422 -0.319067564413742 591. Brown enviromental changes :Nitrogen Depletion 3 d(1) 789 repressed 2.51 0.133061053024645 -0.333983243091859 592. Brown enviromental changes :Nitrogen Depletion 5 d(1) 790 repressed 2.32 0.131607542942494 -0.305329499626586 593. Brown enviromental changes :Diauxic Shift Timecourse(1) 791 induced -0.09 0.097627427184466 -0.00878646844660194 603. Brown enviromental changes :YPD 6 h ypd-2(1) 794 repressed 1.92 0.118292102315161 -0.227120836445109 604. Brown enviromental changes :YPD 8 h ypd-2(1) 795 repressed 1.61 0.137259148618372 -0.220987229275579 605. Brown enviromental changes :YPD 10 h ypd-2(1) 796 repressed 2.01 0.121282673637043 -0.243778174010456 606. Brown enviromental changes :YPD 12 h ypd-2(1) 797 repressed 2.09 0.137830937266617 -0.288066658887229 607. Brown enviromental changes :YPD 1 d ypd-2(1) 798 repressed 2.21 0.123888162808066 -0.273792839805826 608. Brown enviromental changes :YPD 2 d ypd-2(1) 799 repressed 2.31 0.11552931292009 -0.266872712845408 612. Brown enviromental changes :YPD stationary phase 4 h ypd-1(1) 803 induced 0.01 0.102824402539208 0.00102824402539208 614. Brown enviromental changes :YPD stationary phase 12 h ypd-1(1) 805 repressed 1.03 0.130483103061987 -0.134397596153847 615. Brown enviromental changes :YPD stationary phase 1 d ypd-1(1) 806 repressed 1.07 0.12054144884242 -0.128979350261389 616. Brown enviromental changes :YPD stationary phase 2 d ypd-1(1) 807 repressed 1.5 0.131236463778939 -0.196854695668408 617. Brown enviromental changes :YPD stationary phase 3 d ypd-1(1) 808 repressed 1.83 0.124709671396565 -0.228218698655714 618. Brown enviromental changes :YPD stationary phase 5 d ypd-1(1) 809 repressed 0.58 0.113756067961165 -0.0659785194174757 619. Brown enviromental changes :YPD stationary phase 7 d ypd-1(1) 810 repressed -0.1 0.104167755787901 0.0104167755787901 620. Brown enviromental changes :YPD stationary phase 13 d ypd-1(1) 811 repressed -0.41 0.12086211725168 0.0495534680731888 621. Brown enviromental changes :YPD stationary phase 22 d ypd-1(1) 812 repressed 0.69 0.124405806572069 -0.0858400065347276 622. Brown enviromental changes :YPD stationary phase 28 d ypd-1(1) 813 repressed 0.93 0.126699962658701 -0.117830965272592 623. Brown enviromental changes :DBY7286 37degree heat - 20 min(1) 814 repressed 0.23 0.128619772218073 -0.0295825476101568 624. Brown enviromental changes :DBYmsn2-4- 37degree heat - 20 min(1) 815 repressed 0.57 0.125112957430919 -0.0713143857356238 625. Brown enviromental changes :DBYmsn2/4 (real strain) + 37degrees (20 min)(1) 816 repressed 0.44 0.0991878267363704 -0.043642643764003 626. Brown enviromental changes :DBYyap1- 37degree heat - 20 min (redo)(1) 817 repressed 0.07 0.131411967886482 -0.00919883775205374 627. Brown enviromental changes :DBYyap1 + 37degree heat (repeat)(1) 818 repressed 0.41 0.117836538461538 -0.0483129807692306 628. Brown enviromental changes :DBY7286 + 0.3 mM H2O2 (20 min)(1) 819 repressed 0.74 0.0984120612397311 -0.072824925317401 632. Brown enviromental changes :DBYyap1 + 0.32 mM H2O2 (20 min)(1) 823 repressed 1.63 0.100637602688574 -0.164039292382376 634. Brown enviromental changes :MSN4 overexpression(1) 825 repressed -0.1 0.11461211725168 0.011461211725168 638. Brown enviromental changes :glucose car-1(1) 829 induced 0.23 0.115003734129948 0.026450858849888 641. Brown enviromental changes :sucrose car-1(1) 832 induced 0.1 0.1090571321882 0.01090571321882 642. Brown enviromental changes :YP ethanol vs reference pool car-2(1) 833 repressed 0.48 0.137439787154593 -0.0659710978342046 643. Brown enviromental changes :YP fructose vs reference pool car-2(1) 834 induced -0.4 0.12870425690814 -0.051481702763256 645. Brown enviromental changes :YP glucose vs reference pool car-2(1) 836 induced 0.73 0.106681758775205 0.0778776839058997 648. Brown enviromental changes :YP sucrose vs reference pool car-2(1) 839 induced 0.03 0.107442587752054 0.00322327763256162 656. Brown enviromental changes :steady state 21 dec C ct-2(1) 847 induced -0.3 0.107470593726662 -0.0322411781179986 677. Expression in gcr1 mutant YPGL+glucose versus GCR1 YPGL+glucose(1) 865 repressed 1.541 0.112953230022405 -0.174060927464526 679. Expression in GCR1 YPGL+glucose versus GCR1 YPGL(1) 867 induced -1.459 0.12722787528006 -0.185625470033608 680. Expression in GCR1 YPD versus GCR1 YPGL(1) 868 induced -0.864 0.149648991784914 -0.129296728902166 ( trp- 2% Glucose-203792) fus3 (+Fus3K42R) 5mM aF, 30 min. 899 repressed -0.13 0.102001493651979 0.0132601941747573 ( trp- 2% Glucose-203390) fus3 (+Fus3K42R) 5mM aF, 30 min. 900 repressed -0.1 0.113443334578043 0.0113443334578043 trp- 2% Glucose-Average fus3 (+Fus3K42R) 5mM aF, 30 min. 901 repressed -0.12 0.10474001120239 0.0125688013442868 trp- 2% Glucose-Average fus3 (+Fus3T180A,Y182F) 5mM aF, 30 min. 905 repressed -0.43 0.109653659447349 0.0471510735623601 Addition of 1M NaCl (90) 917 repressed 2.89 0.09803071321882 -0.28330876120239 DES460 + 0.02% MMS - 30 min 921 repressed 0.93 0.124613984316654 -0.115891005414488 DES460 + 0.2% MMS - 45 min 922 repressed 0.56 0.110844380134429 -0.0620728528752802 DES460 + 0.02% MMS - 60 min 923 repressed 0.48 0.110530246452577 -0.053054518297237 DES460 + 0.02% MMS - 90 min 924 repressed 0.25 0.100491038088125 -0.0251227595220313 wt_plus_gamma_10_min 937 repressed 0.287 0.105127893950709 -0.0301717055638535 wt_plus_gamma_20_min 938 repressed 0.026 0.143533420463032 -0.00373186893203883 wt_plus_gamma_30_min 939 repressed -0.162 0.116385362210605 0.018854428678118 DES460 (wt) - mock irradiation - 5 min 944 repressed 0.609 0.100386482449589 -0.0611353678117997 mec1_plus_gamma_5_min 948 repressed 0.106 0.10349141150112 -0.0109700896191187 mec1_plus_gamma_10_min 949 repressed -0.328 0.0971793315907394 0.0318748207617625 mec1_plus_gamma_20_min 950 repressed -0.053 0.134447348767737 0.00712570948469006 DES459 (mec1) + heat 20 min 961 repressed 2.017 0.116242064973861 -0.234460245052278 MHY1 (dun1) + heat 20 min 962 repressed 0.46 0.121270070948469 -0.0557842326362957 DES460 + 0.02% MMS - 5 min 966 repressed 0.51 0.126565067214339 -0.0645481842793129 100 microM BCS 30 min 967 induced 0.11 0.120751026885736 0.013282612957431 wt-gal 973 repressed 0.246 0.113294902912621 -0.0278705461165048 gal1+gal 975 repressed 1.173 0.0970841112770724 -0.113879662528006 gal2+gal 976 repressed 0.505 0.10333644510829 -0.0521849047796865 gal3+gal 977 repressed 0.548 0.109615851381628 -0.0600694865571321 gal7+gal 981 repressed 1.026 0.127984503360717 -0.131312100448096 gal3-gal 986 repressed 0.874 0.0992755787901419 -0.086766855862584 gal80-gal 992 repressed 2.269 0.110663274831964 -0.251094970593726 BY4741 GAL t=30min vs. t=0 (YT00261) 996 repressed 0.07 0.108328043315907 -0.00758296303211349 BY4741 GAL t=60min vs. t=0 (YT00259) 997 induced -0.06 0.124494958924571 -0.00746969753547426 sfp1D GLU vs. BY4741 GLU (YT00238) 999 repressed 0.68 0.151423637042569 -0.102968073188947 sfp1::GALSFP1 t=0 RAFF vs. BY4741 t=0 RAF (YT00293) 1000 repressed 0.31 0.107274085138163 -0.0332549663928305 sfp1::GALSFP1 t=30min GAL vs. t=0 RAFF (YT00271) 1003 induced -0.06 0.144583177744586 -0.00867499066467516 sfp1::GALSFP1 t=50min GAL vs. t=0 RAFF (YT00265) 1005 induced -0.17 0.153270631067961 -0.0260560072815534 sfp1::GALSFP1 t=60min GAL vs. t=0 RAFF (YT00267) 1006 induced -0.5 0.131254667662435 -0.0656273338312175 sfp1::GALSFP1 t=90min GAL vs. t=0 RAFF (YT00266) 1007 induced -0.26 0.134660194174757 -0.0350116504854368 YBL020W 1013 repressed 0.26652 0.100892457057506 -0.0268898576549665 YBL040C 1014 repressed 0.32597 0.0972885548917102 -0.0317131502380508 YDL064W 1035 repressed 0.054403 0.0981081964152352 -0.00533738020957804 YGR048W 1057 repressed 0.56673 0.128525952203137 -0.0728395128920838 YIL003W 1072 repressed 0.012079 0.0966187453323376 -0.00116705782486931 YLR060W 1100 repressed 0.32407 0.115347274085138 -0.0373805911127707 YLR440C 1115 repressed 0.70004 0.103245892457058 -0.0722762545556389 YNL310C 1137 repressed 0.14187 0.122270817774459 -0.0173465609176625 YNR035C 1138 repressed 0.14941 0.119241971620612 -0.0178159429798356 YNR053C 1140 induced 0.054766 0.101636949215833 0.00556624916075431 YOR146W 1152 repressed 0.026515 0.101631814787155 -0.00269476756908141 YPL231W 1173 repressed 0.31757 0.114119678864824 -0.0362409864171022 YPL243W 1174 repressed 0.24049 0.103769604182226 -0.0249555521097835 YPR033C 1175 repressed 0.13443 0.113756534727409 -0.0152922909634056 YDR527W 1187 repressed 0.030803 0.111966952949963 -0.00344891805171771 YGL073W 1191 repressed -0.12077 0.0984708737864078 0.0118923274271845 YNL149C 1213 repressed 0.24161 0.119337191934279 -0.0288330589432411 YOL005C 1218 repressed 0.10622 0.103928304705004 -0.0110392645257655 YOR004W 1219 induced -0.02359 0.0986781179985063 -0.00232781680358476 CRZ1OE+ 1227 repressed 0.020446 0.101505321135176 -0.00207537779592981 HAP4OE+ 1238 repressed 0.036779 0.114418876026886 -0.00420821184139284 ROX1OE+ 1256 repressed 0.3040435 0.145547983569828 -0.044252918342513 SFP1OE+ 1258 induced -0.532045 0.232799663928305 -0.123859897194735 TOS8OE+ 1269 induced -0.0152085 0.122787528005975 -0.00186741411967887 ZAP1OE+ 1277 induced -0.0046245 0.104931385362211 -0.000485255191607545 WT/cat8+ 1280 repressed 0.0076585 0.100680078416729 -0.000771058380554519 WT/cst6+ 1282 induced 0.078509 0.106645351008215 0.00837261986230395 WT/msn4+ 1301 repressed 0.013371 0.108410660941001 -0.00144955894744212