Rtg3-primary_8mers_11111111_lteq600sum0.35thrbgdsub.txt_200 Significant Conditions: condindex ind/rep TFexpr area activator/repressor 1. Cell cycle: Expression in response to Cln3p (set 1)(1) 2 repressed -0.18 0.096546863 0.017378435 -0.0100787820916667 10. Sporulation: Ectopic expression of Ndt80; deletion of Ndt80: early, mid,(2) 87 repressed 0.168 0.104876307 -0.01761922 10. Sporulation: Ectopic expression of Ndt80; deletion of Ndt80: early, mid,(3) 88 repressed -0.07 0.137323096 0.009612617 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(6) 94 repressed 0.263 0.10539255 -0.027718241 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(7) 95 repressed 0.029 0.099057599 -0.00287267 18. parental strain versus evolved strain 3(1) 102 repressed -0.23 0.096567868 0.02221061 27. Young: Expression in rpb1 mutant(1) 111 repressed 0 0.116953417 0 28. Young: Expression in srb4 mutant(1) 112 repressed 0 0.107211072 0 30. Young: Expression in med6 mutant(1) 114 repressed 0 0.107843073 0 34. Young: Expression in taf17 mutant(1) 118 repressed 0 0.109894978 0 36. Young: Expression in kin28 mutant(1) 120 repressed 0 0.098332244 0 37. Young: Expression in gcn5 mutant(1) 121 repressed 0 0.107475261 0 43. Young: Expression in fcp1 deletion mutant(1) 133 repressed 0 0.11401419 0 44. Expression in snf2 mutant cells in YPD(1) 134 repressed 0 0.099161688 0 45. Expression in snf2 mutant cells in minimal medium(1) 135 repressed 0.084 0.098981049 -0.008314408 79. Expression in fus3 deletion mutant cells(1) 185 induced -0.007 0.104290982 -0.000730037 100. Young: Expression in spt20 deletion mutant(1) 206 repressed 0 0.125341673 0 102. Young: Expression in taf25_2 deletion mutant(1) 208 repressed 0 0.111891337 0 103. Young: Expression in taf60 deletion mutant(1) 209 repressed 0 0.100792569 0 104. Young: Expression in taf61 deletion mutant(1) 210 repressed 0 0.096449776 0 105. Young: Expression in taf90 deletion mutant(1) 211 repressed 0 0.116857263 0 106. Young: Expression in tsm1 deletion mutant(1) 212 repressed 0 0.107403379 0 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(3) 215 repressed 0.16 0.124575709 -0.019932114 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(8) 220 repressed -0.06 0.10757655 0.006454593 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(10) 222 repressed -0.15 0.118337845 0.017750677 111. Rosetta 2000: Expression in aep2 deletion mutant (1) 230 repressed 0.395 0.095993745 -0.037917529 134. Rosetta 2000: Expression in cka2 deletion mutant (1) 253 repressed -0.143 0.104600915 0.014957931 163. Rosetta 2000: Expression in erg4 (haploid **7) deletion mutant (1) 282 repressed 0.073 0.100734223 -0.007353598 173. Rosetta 2000: Expression in fus3 (haploid) deletion mutant (1) 292 induced -0.023 0.104290982 -0.002398693 181. Rosetta 2000: Expression in gyp1 deletion mutant (1) 300 induced 0.03 0.114055265 0.003421658 207. Rosetta 2000: Expression in med2 (haploid) deletion mutant (1) 326 repressed 0.01 0.098166542 -0.000981665 214. Rosetta 2000: Expression in nta1 deletion mutant (1) 333 induced 0.13 0.099309186 0.012910194 263. Rosetta 2000: Expression in she4 deletion mutant (1) 382 repressed -0.149 0.095973674 0.014300077 264. Rosetta 2000: Expression in sin3 deletion mutant (1) 383 repressed -0.336 0.101084298 0.033964324 322. Rosetta 2000: Expression in yer034w deletion mutant (1) 441 induced -0.023 0.096480583 -0.002219053 325. Rosetta 2000: Expression in yer050c deletion mutant (1) 444 repressed 0.166 0.11653286 -0.019344455 329. Rosetta 2000: Expression in yer083c deletion mutant (1) 448 repressed 0.571 0.115663742 -0.066043996 346. Rosetta 2000: Expression in yml005w deletion mutant (1) 465 induced -0.076 0.104683999 -0.007955984 399. Rosetta 2000: Expression in response to FR901,228(1) 518 repressed 0.126 0.103546957 -0.013046917 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(1) 527 repressed 0.03 0.09909354 -0.002972806 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(2) 528 repressed -0.03 0.106794249 0.003203827 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(2) 541 repressed 0.12 0.101871733 -0.012224608 Starvation in SK1 alpha alpha cells: 2h,4h,6h,8h(3) 566 induced 0.723 0.109395538 0.079092974 Starvation in SK1 alpha alpha cells: 2h,4h,6h,8h(4) 567 induced 0.244 0.127174197 0.031030504 430. Expression in strain PM38 (wild type), glucose versus ethanol: strain was shifted from medium containing dextrose as carbon source, ammonium sulfate as nirogen source, supplemented with leucine and uracil to same medium for 30 min, compared to a shift to a medium with synthetic ethanol instead of glucose for 30 min(1) 587 repressed 0.35 0.103314507 -0.036160077 431. Expression in strain PM71 (gln3 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 588 repressed -0.205 0.117729649 0.024134578 433. Expression in strain PH2 (ure2 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 590 repressed 0.315 0.116160381 -0.03659052 434. Expression in strain P40-1A (gln3 ure2 double deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 591 repressed 0.113 0.106993559 -0.012090272 439. Expression in strain Jk9-3da (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 596 repressed 0.342 0.110126027 -0.037663101 440. Expression in strain TS19-4c in response to 30 min 50 nM treatment with rapamycin in YPD(1) 597 repressed -0.857 0.096411501 0.082624656 442. Expression in strain PM38 (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 599 repressed -0.082 0.108259895 0.008877311 443. Expression in strain YHE710 (mks1 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 600 repressed 0.441 0.113308439 -0.049969022 445. Expression in response to 0.1% MMS for 60 min (average of 3 experiments)(1) 602 repressed 0 0.128951176 0 448. Expression in response to 0.1% MMS for 60 min(1) 605 repressed 0 0.112182132 0 449. Expression in response to 0.1% MMS for 60 min(1) 606 repressed 0 0.114763816 0 451. Expression in response to BCNU (200 micromolar) for 60 min(1) 608 repressed 0 0.126825056 0 454. Expression in response to tBuOOH (5mM) for 60 min(1) 611 repressed 0 0.124765217 0 455. Expression in response to high MNNG (27 microgram/ml) for 60 min(1) 612 repressed 0 0.101186053 0 456. Expression in response to high 4NQO (8 microgram/ml) for 60 min(1) 613 repressed 0 0.112309093 0 458. Expression of S arrested cells (with hydroxyurea) in response to 0.1% MMS for 60 min(1) 615 repressed 0 0.122896751 0 459. Expression of G2 arrested cells (alpha nocodazole) in response to 0.1% MMS for 60 min(1) 616 repressed 0 0.100260922 0 461. Expression of rpn4 deletion in response to 0.1% MMS for 60 min(1) 618 repressed 0 0.103486744 0 462. Expression in response to 0.05% MMS for 60 min(1) 619 repressed 0 0.105910661 0 463. Expression in response to 0.1% MMS for 60 min(1) 620 repressed 0 0.119361931 0 464. Expression in response to 0.2% MMS for 60 min(1) 621 repressed 0.485 0.129697535 -0.062903305 475. Expression in hos2 deletion(1) 632 induced -0.289 0.107060773 -0.030940563 478. Expression in haploid cells in response to rapamycin (100nM) for: 0min,15min,30min,60min,120min(4) 641 repressed 1.009 0.11901559 -0.12008673 479. Expression in diploid cells in response to rapamycin (100nM) for: 15min,30min,90min,120min(4) 646 repressed 0 0.097420183 0 480. Expression in haploid cells deprived to amino acids in response to rapamycin for: 15min,30min,60min,90min,120min(3) 649 repressed 1.094 0.102753921 -0.112412789 481. Expression in response to heat shock: 15,30,45,60,120 min(5) 656 repressed 0 0.098495612 0 482. Expression in response to acid: 10,20,40,60,80,100 min(1) 657 repressed 0 0.10793876 0 482. Expression in response to acid: 10,20,40,60,80,100 min(2) 658 repressed 0 0.118745799 0 482. Expression in response to acid: 10,20,40,60,80,100 min(3) 659 repressed 0 0.096269604 0 483. Expression in response to alkali: 10,20,40,60,80,100 min(5) 667 repressed 0 0.107347367 0 485. Expression in response to peroxide: 10,20,40,60,120 min(3) 673 repressed 0 0.141513723 0 485. Expression in response to peroxide: 10,20,40,60,120 min(4) 674 repressed 0 0.128942774 0 485. Expression in response to peroxide: 10,20,40,60,120 min(5) 675 repressed 0 0.101457244 0 486. Expression in response to NaCl: 15 30 45 60 120 min(3) 678 repressed 0.959 0.096428305 -0.092474744 490. Brown enviromental changes :Heat Shock 15 minutes hs-1(1) 688 repressed -0.25 0.103935306 0.025983827 491. Brown enviromental changes :Heat Shock 20 minutes hs-1(1) 689 repressed -0.07 0.129573842 0.009070169 492. Brown enviromental changes :Heat Shock 30 minutes hs-1(1) 690 repressed -0.49 0.111450709 0.054610848 494. Brown enviromental changes :Heat Shock 60 minutes hs-1(1) 692 repressed -0.14 0.100434559 0.014060838 495. Brown enviromental changes :Heat Shock 80 minutes hs-1(1) 693 repressed 0.1 0.105764563 -0.010576456 496. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 694 induced -0.01 0.114382468 -0.001143825 497. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 695 induced -0.03 0.119921117 -0.003597633 498. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 696 induced -0.27 0.119849701 -0.032359419 500. Brown enviromental changes :Heat Shock 015 minutes hs-2(1) 698 repressed 0.28 0.108867158 -0.030482804 504. Brown enviromental changes :37C to 25C shock - 30 min(1) 702 induced 0.28 0.09788975 0.02740913 506. Brown enviromental changes :37C to 25C shock - 60 min(1) 704 induced -0.56 0.109950523 -0.061572293 507. Brown enviromental changes :37C to 25C shock - 90 min(1) 705 induced -0.34 0.112043969 -0.03809495 508. Brown enviromental changes :heat shock 17 to 37, 20 minutes(1) 706 repressed -0.23 0.117167662 0.026948562 510. Brown enviromental changes :heat shock 25 to 37, 20 minutes(1) 708 repressed 0.25 0.109465086 -0.027366271 511. Brown enviromental changes :heat shock 29 to 37, 20 minutes(1) 709 repressed 0.2 0.115762696 -0.023152539 524. Brown enviromental changes :constant 0.32 mM H2O2 (20 min) redo(1) 722 repressed 0.12 0.112973768 -0.013556852 527. Brown enviromental changes :constant 0.32 mM H2O2 (50 min) redo(1) 725 repressed 0.29 0.103506348 -0.030016841 549. Brown enviromental changes :2.5mM DTT 180 min dtt-1(1) 747 repressed -1.06 0.102551344 0.108704425 550. Brown enviromental changes :dtt 000 min dtt-2(1) 748 induced -0.1 0.115424757 -0.011542476 551. Brown enviromental changes :dtt 015 min dtt-2(1) 749 induced 0.41 0.137723114 0.056466477 553. Brown enviromental changes :dtt 060 min dtt-2(1) 751 repressed 0.06 0.099811893 -0.005988714 554. Brown enviromental changes :dtt 120 min dtt-2(1) 752 repressed 0.45 0.097519604 -0.043883822 556. Brown enviromental changes :dtt 480 min dtt-2(1) 754 induced -0.18 0.096039488 -0.017287108 559. Brown enviromental changes :1.5 mM diamide (20 min)(1) 757 repressed -0.15 0.120366412 0.018054962 560. Brown enviromental changes :1.5 mM diamide (30 min)(1) 758 repressed -0.15 0.112913088 0.016936963 561. Brown enviromental changes :1.5 mM diamide (40 min)(1) 759 repressed -0.22 0.105098954 0.02312177 562. Brown enviromental changes :1.5 mM diamide (50 min)(1) 760 repressed -0.4 0.100358476 0.040143391 563. Brown enviromental changes :1.5 mM diamide (60 min)(1) 761 repressed -0.4 0.098134802 0.039253921 567. Brown enviromental changes :1M sorbitol - 30 min(1) 765 repressed 0.18 0.102102782 -0.018378501 578. Brown enviromental changes :aa starv 0.5 h(1) 776 repressed -0.1 0.102661501 0.01026615 579. Brown enviromental changes :aa starv 1 h(1) 777 repressed 0.3 0.11001587 -0.033004761 581. Brown enviromental changes :aa starv 4 h(1) 779 induced 0.32 0.113169343 0.03621419 582. Brown enviromental changes :aa starv 6 h(1) 780 induced 0.3 0.09831124 0.029493372 583. Brown enviromental changes :Nitrogen Depletion 30 min.(1) 781 repressed 0.66 0.105744025 -0.069791057 585. Brown enviromental changes :Nitrogen Depletion 2 h(1) 783 repressed 0.83 0.125627801 -0.104271074 587. Brown enviromental changes :Nitrogen Depletion 8 h(1) 785 repressed 0.56 0.104732076 -0.058649963 592. Brown enviromental changes :Nitrogen Depletion 5 d(1) 790 repressed 0.33 0.098308439 -0.032441785 603. Brown enviromental changes :YPD 6 h ypd-2(1) 794 repressed 0.54 0.108568895 -0.058627203 604. Brown enviromental changes :YPD 8 h ypd-2(1) 795 repressed 0.55 0.115811706 -0.063696439 605. Brown enviromental changes :YPD 10 h ypd-2(1) 796 repressed 0.75 0.097761856 -0.073321392 614. Brown enviromental changes :YPD stationary phase 12 h ypd-1(1) 805 repressed 0.5 0.1026573 -0.05132865 615. Brown enviromental changes :YPD stationary phase 1 d ypd-1(1) 806 repressed 0.29 0.096179052 -0.027891925 616. Brown enviromental changes :YPD stationary phase 2 d ypd-1(1) 807 repressed 0.24 0.096773245 -0.023225579 626. Brown enviromental changes :DBYyap1- 37degree heat - 20 min (redo)(1) 817 repressed -0.07 0.115998413 0.008119889 629. Brown enviromental changes :DBYmsn2msn4 (good strain) + 0.32 mM H2O2(1) 820 repressed 0.06 0.097544343 -0.005852661 638. Brown enviromental changes :glucose car-1(1) 829 induced 0.73 0.096895538 0.070733743 642. Brown enviromental changes :YP ethanol vs reference pool car-2(1) 833 repressed 0.34 0.099351195 -0.033779406 643. Brown enviromental changes :YP fructose vs reference pool car-2(1) 834 induced 0.04 0.11518764 0.004607506 680. Expression in GCR1 YPD versus GCR1 YPGL(1) 868 induced -0.299 0.115324869 -0.034482136 DES460 + 0.2% MMS - 45 min 922 repressed -0.11 0.099866972 0.010985367 DES460 + 0.02% MMS - 90 min 924 repressed -0.43 0.095855583 0.0412179 dun1- + 0.02% MMs - 30 min 933 repressed -0.064 0.107418316 0.006874772 wt_plus_gamma_10_min 937 repressed -0.25 0.105468633 0.026367158 wt_plus_gamma_20_min 938 repressed -0.22 0.106492718 0.023428398 MHY1 (dun1) + heat 20 min 962 repressed 0.07 0.118881628 -0.008321714 100 microM BCS 30 min 967 induced 0 0.099010922 0 wt-gal 973 repressed 0.379 0.107317028 -0.040673153 gal3+gal 977 repressed 0.017 0.096811987 -0.001645804 gal7+gal 981 repressed -0.013 0.125292662 0.001628805 gal2-gal 985 repressed 0.166 0.102469193 -0.017009886 gal3-gal 986 repressed -0.372 0.098256161 0.036551292 gal4-gal 987 repressed 0.06 0.098366318 -0.005901979 gal10-gal 991 repressed -0.309 0.095112491 0.02938976 gal80-gal 992 repressed 1.774 0.096260736 -0.170766545 BY4741 GAL t=60min vs. t=0 (YT00259) 997 induced 0 0.130817774 0 sfp1D GLU vs. BY4741 GLU (YT00238) 999 repressed 0 0.137820668 0 sfp1::GALSFP1 t=0 RAFF vs. BY4741 t=0 RAF (YT00293) 1000 repressed 0 0.099701736 0 sfp1::GALSFP1 t=30min GAL vs. t=0 RAFF (YT00271) 1003 induced -0.39 0.130386016 -0.050850546 sfp1::GALSFP1 t=50min GAL vs. t=0 RAFF (YT00265) 1005 induced -0.34 0.127259149 -0.043268111 sfp1::GALSFP1 t=60min GAL vs. t=0 RAFF (YT00267) 1006 induced 0.41 0.122699776 0.050306908 sfp1::GALSFP1 t=90min GAL vs. t=0 RAFF (YT00266) 1007 induced -1.32 0.121536128 -0.160427689 YDR091C 1041 repressed 0.059941 0.101029686 -0.00605582 YGR048W 1057 repressed 0.059777 0.10740758 -0.006420503 YNL131W 1131 repressed 0.32396 0.101913275 -0.033015825 YNL272C 1136 repressed 0.092673 0.096558999 -0.008948412 YPL231W 1173 repressed 0.080652 0.125019604 -0.010083081 YNL149C 1213 repressed 0.045738 0.101790982 -0.004655716 YOL005C 1218 repressed 0.036982 0.097001494 -0.003587309 YOR004W 1219 induced 0.06403 0.096503454 0.006179116 SFP1OE+ 1258 induced 0.0885825 0.22575196 0.019997673 WT/cst6+ 1282 induced -0.1193695 0.105323002 -0.012572354