Input Cluster (n=200) YAL053W YAL054C ACS1 YAR035W YAT1 YAR064W YBR009C HHF1 YBR010W HHT1 YBR050C REG2 YBR067C TIP1 YBR069C TAT1 YBR093C PHO5 YBR105C VID24 YBR106W PHO88 YBR150C TBS1 YBR151W APD1 YBR187W YBR230C YBR243C ALG7 YBR244W GPX2 YCR010C ADY2 YCR015C YCR099C YDL031W DBP10 YDL049C KNH1 YDL085W NDE2 YDL110C YDL183C YDL246C YDR004W RAD57 YDR034C-A YDR034W-B YDR036C YDR037W KRS1 YDR148C KGD2 YDR150W NUM1 YDR223W YDR275W YDR276C PMP3 YDR345C HXT3 YDR395W SXM1 YDR441C APT2 YDR447C RPS17B YDR448W ADA2 YDR462W MRPL28 YDR508C GNP1 YDR525W-A SNA2 YDR533C YEL012W UBC8 YEL034W HYP2 YEL044W IES6 YEL060C PRB1 YER035W EDC2 YER048C CAJ1 YER055C HIS1 YER065C ICL1 YER073W ALD5 YER083C RMD7 YER088C DOT6 YER146W LSM5 YER151C UBP3 YER167W BCK2 YER177W BMH1 YFL022C FRS2 YFL066C YFR017C YFR037C RSC8 YFR052W RPN12 YGL009C LEU1 YGL038C OCH1 YGL054C ERV14 YGL055W OLE1 YGL056C SDS23 YGL095C VPS45 YGL181W GTS1 YGL183C MND1 YGR130C YGR209C TRX2 YGR276C RNH70 YGR292W MAL12 YHL029C YHL050C YHR005C-A MRS11 YHR031C RRM3 YHR048W YHR080C YHR081W LRP1 YHR087W YHR141C RPL42B YHR177W YIL090W YIL120W QDR1 YIR002C MPH1 YIR003W YIR027C DAL1 YIR028W DAL4 YJL136C RPS21B YJL153C INO1 YJR048W CYC1 YJR061W YJR159W SOR1 YKL007W CAP1 YKL008C LAC1 YKL035W UGP1 YKL052C ASK1 YKL096W-A CWP2 YKL171W YKR006C MRPL13 YKR016W YKR066C CCP1 YKR067W GPT2 YKR097W PCK1 YLL018C-A COX19 YLL039C UBI4 YLR108C YLR109W AHP1 YLR152C YLR168C YLR174W IDP2 YLR183C TOS4 YLR185W RPL37A YLR205C HMX1 YLR237W THI7 YLR258W GSY2 YLR304C ACO1 YLR312C YLR312W-A MRPL15 YLR355C ILV5 YLR377C FBP1 YLR406C RPL31B YML007W YAP1 YML100W TSL1 YML101C CUE4 YML126C ERG13 YMR012W CLU1 YMR108W ILV2 YMR135C DCR1 YMR196W YMR205C PFK2 YMR303C ADH2 YMR304W UBP15 YMR316W DIA1 YMR318C ADH6 YNL045W YNL065W AQR1 YNL078W NIS1 YNL079C TPM1 YNL093W YPT53 YNL111C CYB5 YNL117W MLS1 YNL118C DCP2 YNL137C NAM9 YNL162W RPL42A YNL193W YNL241C ZWF1 YNL306W MRPS18 YNL307C MCK1 YNR013C PHO91 YNR014W YNR018W YNR019W ARE2 YNR070W PDR18 YOL012C HTZ1 YOL084W PHM7 YOL101C YOL126C MDH2 YOR062C YOR064C YNG1 YOR065W CYT1 YOR138C YOR226C ISU2 YOR227W YOR234C RPL33B YOR250C CLP1 YOR273C TPO4 YOR274W MOD5 YOR292C YOR293W RPS10A YOR348C PUT4 YOR349W CIN1 YOR382W FIT2 YPL058C PDR12 YPL075W GCR1 YPL090C RPS6A YPL107W YPL112C PEX25 YPL135W ISU1 YPL143W RPL33A YPL200W CSM4 YPL201C YPL221W BOP1 YPL237W SUI3 YPL255W BBP1 YPL265W DIP5 YPR023C EAF3 YPR024W YME1 YPR029C APL4 YPR030W CSR2 YPR046W MCM16 YPR151C YPR157W YPR204W Genes Not Found: MIPS Functional Classification Category p-value In Category from Cluster k f C-compound and carbohydrate utilization 7.85331e-06 ACS1 ALG7 KNH1 YDL246C KGD2 ICL1 OCH1 MAL12 INO1 SOR1 UGP1 PCK1 IDP2 GSY2 ACO1 FBP1 TSL1 PFK2 ADH2 ADH6 MLS1 ZWF1 MDH2 23 261 glyoxylate cycle 1.43638e-05 ICL1 ACO1 MLS1 MDH2 4 6 ENERGY 1.45665e-05 ACS1 NDE2 KGD2 ICL1 ALD5 CYC1 UGP1 YKR016W PCK1 IDP2 GSY2 ACO1 FBP1 TSL1 PFK2 ADH2 ADH6 MLS1 DCP2 ZWF1 MDH2 CYT1 22 252 C-compound and carbohydrate metabolism 0.000278251 ACS1 REG2 ALG7 ADY2 KNH1 YDL246C KGD2 HXT3 ICL1 OCH1 MAL12 INO1 SOR1 UGP1 PCK1 IDP2 GSY2 ACO1 FBP1 TSL1 PFK2 ADH2 ADH6 MLS1 ZWF1 MDH2 GCR1 27 415 METABOLISM 0.000397808 ACS1 YAT1 REG2 TIP1 TAT1 PHO5 PHO88 ALG7 ADY2 KNH1 YDL246C KGD2 HXT3 APT2 GNP1 HYP2 HIS1 ICL1 LEU1 OCH1 OLE1 RNH70 MAL12 DAL1 INO1 SOR1 UGP1 PCK1 IDP2 HMX1 THI7 GSY2 ACO1 ILV5 FBP1 TSL1 ERG13 ILV2 PFK2 ADH2 ADH6 YNL045W CYB5 MLS1 ZWF1 PHO91 ARE2 MDH2 ISU2 PUT4 GCR1 ISU1 DIP5 53 1066 cytoplasm 0.0013087 KRS1 RPS17B HYP2 ICL1 UBP3 FRS2 LEU1 MAL12 RPL42B RPS21B INO1 PCK1 UBI4 IDP2 RPL37A GSY2 ACO1 FBP1 RPL31B YAP1 TSL1 PFK2 ADH2 RPL42A ZWF1 MDH2 MOD5 RPS10A RPS6A RPL33A SUI3 31 554 detoxification 0.00144542 GPX2 TRX2 YHR048W QDR1 MPH1 CCP1 AQR1 ZWF1 PDR18 TPO4 10 102 ribosome biogenesis 0.0034766 RPS17B MRPL28 RPL42B RPS21B MRPL13 RPL37A MRPL15 RPL31B NAM9 RPL42A MRPS18 RPL33B RPS10A RPS6A RPL33A 15 215 PROTEIN SYNTHESIS 0.0049438 KRS1 RPS17B MRPL28 HYP2 FRS2 RPL42B RPS21B MRPL13 UBI4 RPL37A MRPL15 RPL31B CLU1 NAM9 RPL42A MRPS18 RPL33B RPS10A RPS6A RPL33A SUI3 21 359 MIPS Phenotypes Category p-value In Category from Cluster k f MIPS Subcellular Localization Category p-value In Category from Cluster k f cytoplasm 0.00010113 KRS1 SXM1 RPS17B HYP2 ICL1 UBP3 BCK2 FRS2 LEU1 MAL12 RPL42B RPS21B INO1 PCK1 UBI4 AHP1 IDP2 RPL37A GSY2 ACO1 FBP1 RPL31B YAP1 TSL1 CLU1 PFK2 ADH2 RPL42A ZWF1 MDH2 RPL33B MOD5 RPS10A RPS6A RPL33A SUI3 36 593 mitochondria 0.00278128 ACS1 YAT1 NDE2 KGD2 MRPL28 ALD5 MRS11 CYC1 MRPL13 CCP1 AHP1 YLR168C ACO1 MRPL15 ILV5 ILV2 NAM9 MRPS18 CYT1 ISU2 MOD5 ISU1 YME1 23 388 MIPS Protein Complexes Category p-value In Category from Cluster k f Translation complexes 0.00160867 RPS17B MRPL28 HYP2 RPL42B RPS21B MRPL13 RPL37A MRPL15 RPL31B NAM9 RPL42A MRPS18 RPL33B RPS10A RPS6A RPL33A SUI3 17 240 MIPS Protein Classes Category p-value In Category from Cluster k f Major facilitator superfamily proteins (MFS) 0.00183251 TAT1 HXT3 GNP1 YHR048W QDR1 DAL4 THI7 AQR1 PHO91 TPO4 PUT4 DIP5 12 142 Histones 0.00437089 HHF1 HHT1 HTZ1 3 11 GO Molecular Function Category p-value In Category from Cluster k f amino acid permease [GO:0015359] 0.000125104 GNP1 PUT4 DIP5 3 4 polyamine transporter [GO:0015203] 0.000596423 GNP1 PUT4 DIP5 3 6 amino acid-polyamine transporter [GO:0005279] 0.000596423 GNP1 PUT4 DIP5 3 6 oxo-acid-lyase [GO:0016833] 0.0010418 ICL1 ERG13 ILV2 MLS1 4 15 amine/polyamine transporter [GO:0005275] 0.00159254 GNP1 PUT4 DIP5 3 8 oxidoreductase, acting on CH-OH group of donors [GO:0016614] 0.00229481 SOR1 IDP2 ILV5 ADH2 ADH6 ZWF1 MDH2 7 58 structural constituent of ribosome [GO:0003735] 0.00230426 RPS17B MRPL28 RPL42B RPS21B MRPL13 RPL37A MRPL15 RPL31B NAM9 RPL42A MRPS18 RPL33B RPS10A RPS6A RPL33A 15 206 peroxidase [GO:0004601] 0.00233288 GPX2 CCP1 AHP1 3 9 phosphate transporter [GO:0015114] 0.0029765 PHO88 PHO91 2 3 oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, miscellaneous [GO:0016718] 0.0029765 OLE1 HMX1 2 3 oxidoreductase [GO:0016491] 0.0034766 GPX2 NDE2 ALD5 OLE1 TRX2 SOR1 CCP1 AHP1 IDP2 HMX1 ILV5 ADH2 ADH6 ZWF1 MDH2 15 215 oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor [GO:0016616] 0.00353338 SOR1 IDP2 ILV5 ADH2 ADH6 ZWF1 6 47 oxidoreductase, acting on peroxide as acceptor [GO:0016684] 0.00437089 GPX2 CCP1 AHP1 3 11 structural molecule [GO:0005198] 0.00451897 TIP1 RPS17B MRPL28 RPL42B RPS21B ASK1 CWP2 MRPL13 RPL37A MRPL15 RPL31B NAM9 RPL42A MRPS18 RPL33B RPS10A RPS6A RPL33A BBP1 19 310 electron transporter [GO:0005489] 0.00468663 NDE2 CYC1 CYB5 CYT1 4 22 amino acid transporter [GO:0015171] 0.00468663 TAT1 GNP1 PUT4 DIP5 4 22 GO Biological Process Category p-value In Category from Cluster k f carbohydrate metabolism [GO:0005975] 4.32647e-06 KNH1 KGD2 ICL1 BMH1 MAL12 INO1 SOR1 UGP1 PCK1 IDP2 GSY2 ACO1 FBP1 TSL1 PFK2 MLS1 ZWF1 MDH2 18 165 main pathways of carbohydrate metabolism [GO:0006092] 5.15164e-06 KGD2 ICL1 PCK1 IDP2 ACO1 FBP1 PFK2 MLS1 ZWF1 MDH2 10 53 alcohol metabolism [GO:0006066] 1.95603e-05 YAT1 NDE2 INO1 SOR1 UGP1 PCK1 FBP1 PFK2 ADH2 ADH6 ZWF1 MDH2 12 88 energy pathways [GO:0006091] 4.1491e-05 ACS1 NDE2 KGD2 ICL1 BMH1 PCK1 IDP2 GSY2 ACO1 FBP1 TSL1 PFK2 ADH2 MLS1 ZWF1 MDH2 16 159 energy derivation by oxidation of organic compounds [GO:0015980] 4.1491e-05 ACS1 NDE2 KGD2 ICL1 BMH1 PCK1 IDP2 GSY2 ACO1 FBP1 TSL1 PFK2 ADH2 MLS1 ZWF1 MDH2 16 159 glyoxylate cycle [GO:0006097] 0.000305393 ICL1 MLS1 MDH2 3 5 glyoxylate metabolism [GO:0046487] 0.000305393 ICL1 MLS1 MDH2 3 5 hexose metabolism [GO:0019318] 0.000801982 INO1 SOR1 UGP1 PCK1 FBP1 PFK2 ZWF1 MDH2 8 63 organic acid metabolism [GO:0006082] 0.000852745 ACS1 KGD2 ICL1 OLE1 IDP2 ACO1 MLS1 MDH2 PDR12 9 79 carboxylic acid metabolism [GO:0019752] 0.000852745 ACS1 KGD2 ICL1 OLE1 IDP2 ACO1 MLS1 MDH2 PDR12 9 79 aldehyde metabolism [GO:0006081] 0.00135467 ICL1 ADH6 MLS1 MDH2 4 16 biosynthesis [GO:0009058] 0.00143385 ACS1 ALG7 KNH1 KRS1 RPS17B MRPL28 HYP2 HIS1 FRS2 LEU1 OCH1 RPL42B RPS21B UGP1 MRPL13 GPT2 PCK1 IDP2 RPL37A ACO1 MRPL15 ILV5 FBP1 RPL31B TSL1 ERG13 CLU1 ILV2 CYB5 NAM9 RPL42A MRPS18 MDH2 RPL33B RPS10A RPS6A RPL33A SUI3 38 731 monosaccharide metabolism [GO:0005996] 0.00147054 INO1 SOR1 UGP1 PCK1 FBP1 PFK2 ZWF1 MDH2 8 69 glucose metabolism [GO:0006006] 0.00251429 UGP1 PCK1 FBP1 PFK2 ZWF1 MDH2 6 44 cell growth and/or maintenance [GO:0008151] 0.00277865 ACS1 YAT1 HHF1 HHT1 REG2 TIP1 TAT1 PHO5 VID24 PHO88 ALG7 GPX2 ADY2 DBP10 KNH1 NDE2 RAD57 YDR036C KRS1 KGD2 NUM1 PMP3 HXT3 SXM1 RPS17B ADA2 MRPL28 GNP1 UBC8 HYP2 PRB1 EDC2 HIS1 ICL1 ALD5 RMD7 DOT6 LSM5 UBP3 BCK2 BMH1 FRS2 RSC8 RPN12 LEU1 OCH1 ERV14 OLE1 VPS45 GTS1 MND1 TRX2 RNH70 MAL12 MRS11 RRM3 RPL42B QDR1 MPH1 DAL1 DAL4 RPS21B INO1 CYC1 SOR1 CAP1 UGP1 ASK1 CWP2 YKL171W MRPL13 CCP1 GPT2 PCK1 COX19 UBI4 AHP1 IDP2 RPL37A HMX1 THI7 GSY2 ACO1 MRPL15 ILV5 FBP1 RPL31B YAP1 TSL1 ERG13 CLU1 ILV2 PFK2 ADH2 UBP15 DIA1 ADH6 YNL045W NIS1 TPM1 YPT53 CYB5 MLS1 DCP2 NAM9 RPL42A ZWF1 MRPS18 MCK1 PHO91 ARE2 HTZ1 MDH2 YNG1 CYT1 ISU2 RPL33B CLP1 MOD5 RPS10A PUT4 CIN1 PDR12 GCR1 RPS6A ISU1 RPL33A CSM4 SUI3 BBP1 DIP5 EAF3 YME1 APL4 CSR2 MCM16 136 3657 response to oxidative stress [GO:0006979] 0.00314095 GPX2 TRX2 CCP1 AHP1 YAP1 5 32 TCA intermediate metabolism [GO:0006100] 0.00393128 KGD2 IDP2 ACO1 MDH2 4 21 branched chain family amino acid biosynthesis [GO:0009082] 0.00437089 LEU1 ILV5 ILV2 3 11 oxygen and reactive oxygen species metabolism [GO:0006800] 0.0046866 GPX2 TRX2 CCP1 AHP1 YAP1 5 35 GO Cellular Component Category p-value In Category from Cluster k f cytoplasm [GO:0005737] 0.000396619 ACS1 YAT1 VID24 ALG7 NDE2 KRS1 KGD2 RPS17B MRPL28 HYP2 PRB1 ALD5 UBP3 FRS2 RPN12 OCH1 ERV14 OLE1 SDS23 VPS45 GTS1 YGR130C TRX2 MRS11 RPL42B RPS21B CYC1 CAP1 LAC1 ASK1 YKL171W MRPL13 CCP1 GPT2 PCK1 COX19 UBI4 AHP1 IDP2 RPL37A GSY2 ACO1 MRPL15 ILV5 FBP1 RPL31B YAP1 CUE4 ERG13 CLU1 ILV2 PFK2 ADH2 DIA1 TPM1 YPT53 MLS1 DCP2 NAM9 RPL42A ZWF1 MRPS18 YNR014W ARE2 MDH2 CYT1 YOR138C ISU2 RPL33B MOD5 RPS10A CIN1 RPS6A PEX25 ISU1 RPL33A SUI3 BBP1 YME1 APL4 80 1810 cytosol [GO:0005829] 0.000822119 ACS1 RPS17B RPN12 TRX2 RPL42B RPS21B PCK1 COX19 IDP2 RPL37A ACO1 FBP1 RPL31B PFK2 RPL42A MDH2 RPL33B MOD5 RPS10A RPS6A RPL33A 21 310 ribosome [GO:0005840] 0.00139752 RPS17B MRPL28 HYP2 RPL42B RPS21B MRPL13 RPL37A MRPL15 RPL31B CLU1 NAM9 RPL42A MRPS18 RPL33B RPS10A RPS6A RPL33A SUI3 18 258 cell [GO:0005623] 0.00406501 ACS1 YAT1 HHF1 HHT1 TAT1 VID24 PHO88 ALG7 DBP10 NDE2 RAD57 KRS1 KGD2 NUM1 PMP3 HXT3 SXM1 RPS17B ADA2 MRPL28 GNP1 HYP2 PRB1 HIS1 ALD5 LSM5 UBP3 FRS2 RSC8 RPN12 LEU1 OCH1 ERV14 OLE1 SDS23 VPS45 GTS1 YGR130C TRX2 RNH70 MRS11 RRM3 RPL42B QDR1 MPH1 DAL1 DAL4 RPS21B CYC1 CAP1 LAC1 ASK1 YKL171W MRPL13 CCP1 GPT2 PCK1 COX19 UBI4 AHP1 IDP2 RPL37A HMX1 THI7 GSY2 ACO1 MRPL15 ILV5 FBP1 RPL31B YAP1 CUE4 ERG13 CLU1 ILV2 PFK2 ADH2 DIA1 ADH6 NIS1 TPM1 YPT53 CYB5 MLS1 DCP2 NAM9 RPL42A ZWF1 MRPS18 MCK1 PHO91 YNR014W ARE2 HTZ1 MDH2 YNG1 CYT1 YOR138C ISU2 RPL33B CLP1 MOD5 RPS10A PUT4 CIN1 PDR12 GCR1 RPS6A PEX25 ISU1 RPL33A SUI3 BBP1 DIP5 EAF3 YME1 APL4 MCM16 118 3106 SMART Domains Category p-value In Category from Cluster k f ZnF_ZZ 0.00101352 ADA2 RSC8 2 2 PFam-A Domains Category p-value In Category from Cluster k f PF00935 (Ribosomal_L44) 0.00101352 RPL42B RPL42A 2 2 PF01592 (NifU_N) 0.00101352 ISU2 ISU1 2 2 PF00569 (ZZ) 0.00101352 ADA2 RSC8 2 2 PF01247 (Ribosomal_L35Ae) 0.00101352 RPL33B RPL33A 2 2 PF00125 (histone) 0.00325479 HHF1 HHT1 HTZ1 3 10 PF00107 (adh_zinc) 0.00393128 YDL246C SOR1 ADH2 ADH6 4 21 PF00324 (aa_permeases) 0.00468663 TAT1 GNP1 PUT4 DIP5 4 22 Yeast Two Hybrid - Uetz Category p-value In Category from Cluster k f YDL246C 0.00101352 YDL246C SOR1 2 2 YMR308C (PSE1) 0.00437089 YDL246C KGD2 SOR1 3 11 Yeast Two Hybrid - Ito (core) Category p-value In Category from Cluster k f Yeast Two Hybrid - Ito (full) Category p-value In Category from Cluster k f Synthetic Genetic Array Analysis Category p-value In Category from Cluster k f MDS Proteomics Complexes Category p-value In Category from Cluster k f YLR340W (RPP0) 0.000181761 HHF1 HYP2 YHR087W AHP1 4 10 YDR499W (LCD1) 0.000596423 HHF1 ILV5 ADH2 3 6 YOR043W (WHI2) 0.00101352 HYP2 CSR2 2 2 Cellzome Complexes Category p-value In Category from Cluster k f YJL124C (LSM1) 0.00437089 KRS1 LSM5 DCP2 3 11 Proteome Localization--Observed Category p-value In Category from Cluster k f Proteome Localization--Predicted+Observed Category p-value In Category from Cluster k f Deletions Consortium (Essentiality, Morphology) Category p-value In Category from Cluster k f Yeast Fitness Data Category p-value In Category from Cluster k f Published Complexes Category p-value In Category from Cluster k f