Stb3-FL-primary_8mers_1.1111111_lteq600sum0.35thrbgdsub.txt_200 Significant Conditions: condindex ind/rep TFexpr area activator/repressor 1. Cell cycle: Expression in response to Cln3p (set 1)(1) 2 repressed -0.01 0.148855489 0.001488555 -0.053927296407173 5. Expression during the cell cycle (alpha factor arrest and release)(2) 7 repressed 0.27 0.124529966 -0.033623091 5. Expression during the cell cycle (alpha factor arrest and release)(3) 8 repressed 0.19 0.135900859 -0.025821163 5. Expression during the cell cycle (alpha factor arrest and release)(4) 9 repressed 0.19 0.109799757 -0.020861954 5. Expression during the cell cycle (alpha factor arrest and release)(9) 14 induced 0.29 0.111573002 0.032356171 6. Expression during the cell cycle (cdc15 arrest and release)(1) 24 induced -0.01 0.17785941 -0.001778594 6. Expression during the cell cycle (cdc15 arrest and release)(2) 25 induced 0.03 0.150614264 0.004518428 6. Expression during the cell cycle (cdc15 arrest and release)(3) 26 induced 0.04 0.102365571 0.004094623 6. Expression during the cell cycle (cdc15 arrest and release)(13) 36 repressed 0.1 0.122187733 -0.012218773 6. Expression during the cell cycle (cdc15 arrest and release)(15) 38 repressed -0.32 0.106719567 0.034150261 6. Expression during the cell cycle (cdc15 arrest and release)(16) 39 induced 0.25 0.095465833 0.023866458 6. Expression during the cell cycle (cdc15 arrest and release)(19) 42 repressed -0.1 0.1028146 0.01028146 6. Expression during the cell cycle (cdc15 arrest and release)(21) 44 repressed -0.23 0.168506815 0.038756567 6. Expression during the cell cycle (cdc15 arrest and release)(23) 46 repressed 0.13 0.117892084 -0.015325971 6. Expression during the cell cycle (cdc15 arrest and release)(24) 47 repressed 0.09 0.129898712 -0.011690884 7. Expression during the cell Cycle (cdc28)(1) 48 repressed 0.43 0.104260642 -0.044832076 7. Expression during the cell Cycle (cdc28)(3) 50 induced 0.24 0.104063667 0.02497528 8. Expression during the cell cycle (cell size selection and release)(1) 65 repressed 0.77 0.173528286 -0.13361678 8. Expression during the cell cycle (cell size selection and release)(4) 68 induced 0.05 0.128139003 0.00640695 8. Expression during the cell cycle (cell size selection and release)(5) 69 induced -0.43 0.220421023 -0.09478104 8. Expression during the cell cycle (cell size selection and release)(6) 70 induced -0.29 0.159352128 -0.046212117 8. Expression during the cell cycle (cell size selection and release)(7) 71 induced -0.36 0.109080471 -0.039268969 8. Expression during the cell cycle (cell size selection and release)(10) 74 induced 0.12 0.121441374 0.014572965 8. Expression during the cell cycle (cell size selection and release)(12) 76 repressed 0.16 0.128609503 -0.020577521 8. Expression during the cell cycle (cell size selection and release)(14) 78 repressed 0.1 0.105004668 -0.010500467 9. Sporulation: time course: t0,t0.5,t2,t5,t7,t9,t11.5(2) 80 repressed 0.044 0.228268764 -0.010043826 9. Sporulation: time course: t0,t0.5,t2,t5,t7,t9,t11.5(3) 81 repressed -0.227 0.187219007 0.042498715 9. Sporulation: time course: t0,t0.5,t2,t5,t7,t9,t11.5(4) 82 repressed 0.234 0.111420836 -0.026072476 9. Sporulation: time course: t0,t0.5,t2,t5,t7,t9,t11.5(5) 83 repressed 0.136 0.143782674 -0.019554444 9. Sporulation: time course: t0,t0.5,t2,t5,t7,t9,t11.5(6) 84 repressed -0.31 0.105873786 0.032820874 10. Sporulation: Ectopic expression of Ndt80; deletion of Ndt80: early, mid,(1) 86 repressed -0.057 0.123653846 0.007048269 10. Sporulation: Ectopic expression of Ndt80; deletion of Ndt80: early, mid,(2) 87 repressed 0.889 0.228804612 -0.2034073 10. Sporulation: Ectopic expression of Ndt80; deletion of Ndt80: early, mid,(3) 88 repressed 0.737 0.213577763 -0.157406812 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(1) 89 induced -0.074 0.106781647 -0.007901842 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(4) 92 repressed -0.269 0.156168316 0.042009277 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(5) 93 repressed -0.184 0.155491505 0.028610437 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(6) 94 repressed 0.433 0.211310213 -0.091497322 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(7) 95 repressed 0.782 0.254470687 -0.198996077 12. Expression in tup1-deleted cells(1) 96 induced -0.622 0.099360997 -0.06180254 15. evolved strain 1 versus evolved strain 1(1) 99 repressed -0.22 0.10029873 0.022065721 17. parental strain versus evolved strain 2(1) 101 induced 0.18 0.11637416 0.020947349 18. parental strain versus evolved strain 3(1) 102 induced -0.42 0.096931012 -0.040711025 20. Fink: Expression in haploid ste12 deletion mutant(1) 104 repressed 0 0.116448842 0 21. Fink: Expression in haploid ste7 deletion mutant(1) 105 repressed 0 0.109076736 0 22. Fink: Expression in haploid high copyt TEC1(1) 106 repressed 0 0.114507095 0 27. Young: Expression in rpb1 mutant(1) 111 repressed 0 0.164426344 0 28. Young: Expression in srb4 mutant(1) 112 repressed 0 0.184755414 0 29. Young: Expression in srb5 mutant(1) 113 repressed 0 0.137414115 0 30. Young: Expression in med6 mutant(1) 114 repressed 0 0.175238051 0 31. Young: Expression in srb10 mutant(1) 115 repressed 0 0.117420183 0 32. Young: Expression in swi2 mutant(1) 116 repressed 0.018 0.176616878 -0.003179104 33. Young: Expression in taf145 mutant(1) 117 repressed 0 0.158613704 0 34. Young: Expression in taf17 mutant(1) 118 repressed 0 0.188557692 0 35. Young: Expression in tfa1 mutant(1) 119 repressed 0 0.187633962 0 36. Young: Expression in kin28 mutant(1) 120 repressed 0 0.153898898 0 37. Young: Expression in gcn5 mutant(1) 121 repressed 0 0.143747666 0 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(2) 123 repressed 0 0.096769978 0 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(3) 124 repressed 0 0.134112211 0 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(4) 125 repressed 0.581 0.112635829 -0.065441417 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(6) 127 repressed 0 0.157460792 0 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(7) 128 repressed -0.292 0.151729369 0.044304976 39. Young: Expression in sir2 deletion mutant(1) 129 induced 0 0.117623226 0 40. Young: Expression in sir3 deletion mutant(1) 130 induced 0 0.098588499 0 43. Young: Expression in fcp1 deletion mutant(1) 133 repressed 0 0.166706031 0 44. Expression in snf2 mutant cells in YPD(1) 134 repressed 1.039 0.192140123 -0.199633588 45. Expression in snf2 mutant cells in minimal medium(1) 135 repressed 0.059 0.164887043 -0.009728336 46. Expression in swi1 mutant cells in YPD(1) 136 repressed -0.014 0.133396658 0.001867553 47. Expression in swi1 mutant cells in minimal medium(1) 137 repressed 0.126 0.144609783 -0.018220833 48. Expression in response to 0.15,0.5,1.5,5,15.8,50,158,500 nM alpha-factor(5) 142 induced -0.044 0.098786408 -0.004346602 50. Expression in response to 50 nM alpha-factor in bni1 deletion mutant: 60,90,120 min(1) 153 induced 0.04 0.098492345 0.003939694 53. Expression in response to overproduction of Ste4p(1) 158 induced -0.05 0.104498226 -0.005224911 54. Expression in response to overproduction of Ste5p(1) 159 induced -0.101 0.106915142 -0.010798429 72. Expression in response to overproduction of activated Bni1p(1) 177 repressed -0.007 0.112103715 0.000784726 73. Expression in response to overproduction of activated Pkc1p(1) 178 repressed 0.155 0.153393857 -0.023776048 74. Expression in response to overproduction of activated Rho1p(1) 179 repressed 0.098 0.142341299 -0.013949447 76. Expression in tec1 deletion mutant cells treated with alpha-factor compared to wild-type cells treated with alpha-factor: 30,120 min(2) 182 induced 0.009 0.101815254 0.000916337 80. Expression in fus3 tec1 double deletion mutant cells(1) 186 induced -0.063 0.141815721 -0.00893439 84. Expression in rst1 rst2 tec1 triple deletion mutant cells(1) 190 repressed 0.016 0.153120799 -0.002449933 88. Expression in response to DNA damage by MMS(1) 194 repressed 0 0.172500467 0 90. Expression in his3 mutant cells(1) 196 repressed 0.689 0.209902446 -0.144622785 95. Expression in response to 50ug/mL FK506(1) 201 repressed 0.07 0.176136109 -0.012329528 97. Church: mating type a GLUCOSE 30 C vs. mating type a GALACTOSE 30 C(1) 203 induced 0 0.120190907 0 98. Church: mating type A glucose 30 C vs. mating type ALPHA glactose 30 C(1) 204 repressed 0 0.125977409 0 100. Young: Expression in spt20 deletion mutant(1) 206 repressed 0 0.203307039 0 101. Young: Expression in spt3 deletion mutant(1) 207 repressed 0 0.153648712 0 102. Young: Expression in taf25_2 deletion mutant(1) 208 repressed 0 0.215372013 0 103. Young: Expression in taf60 deletion mutant(1) 209 repressed 0 0.167937827 0 104. Young: Expression in taf61 deletion mutant(1) 210 repressed 0 0.131623413 0 105. Young: Expression in taf90 deletion mutant(1) 211 repressed 0 0.184421677 0 106. Young: Expression in tsm1 deletion mutant(1) 212 repressed 0 0.158436333 0 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(2) 214 repressed 0 0.230807506 0 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(3) 215 repressed 0 0.22287388 0 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(4) 216 repressed 0 0.210059279 0 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(5) 217 repressed 0 0.139373133 0 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(6) 218 repressed 0 0.129379201 0 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(8) 220 repressed 0 0.16737444 0 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(9) 221 repressed 0 0.140374347 0 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(10) 222 repressed 0 0.196151512 0 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(12) 224 repressed 0 0.123757001 0 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(13) 225 repressed 0 0.116075429 0 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(14) 226 repressed 0 0.123214619 0 111. Rosetta 2000: Expression in aep2 deletion mutant (1) 230 repressed 0.066 0.172040235 -0.011354656 112. Rosetta 2000: Expression in afg3 (haploid) deletion mutant (1) 231 repressed 0.372 0.117159261 -0.043583245 119. Rosetta 2000: Expression in arg5,6 deletion mutant (1) 238 induced -0.179 0.115835512 -0.020734557 123. Rosetta 2000: Expression in bim1 (**15) deletion mutant (1) 242 repressed -0.083 0.100151699 0.008312591 124. Rosetta 2000: Expression in bni1 (haploid) deletion mutant (1) 243 repressed 0.066 0.128257562 -0.008464999 125. Rosetta 2000: Expression in bub1 (haploid **2,10) deletion mutant (1) 244 repressed 0.083 0.110406087 -0.009163705 127. Rosetta 2000: Expression in bub3 (**2,8,13) deletion mutant (1) 246 repressed -0.209 0.119603715 0.024997177 130. Rosetta 2000: Expression in cat8 deletion mutant (1) 249 repressed -0.01 0.09951643 0.000995164 132. Rosetta 2000: Expression in cem1 deletion mutant (1) 251 repressed -0.036 0.10809466 0.003891408 134. Rosetta 2000: Expression in cka2 deletion mutant (1) 253 repressed 0.073 0.114976195 -0.008393262 139. Rosetta 2000: Expression in cmk2 deletion mutant (1) 258 repressed 0.076 0.106426904 -0.008088445 146. Rosetta 2000: Expression in dfr1 deletion mutant (1) 265 repressed 0.053 0.113077857 -0.005993126 154. Rosetta 2000: Expression in ecm10 deletion mutant (1) 273 repressed 0.196 0.108496546 -0.021265323 158. Rosetta 2000: Expression in ecm34 deletion mutant (1) 277 repressed 0.017 0.112181665 -0.001907088 159. Rosetta 2000: Expression in eft2 deletion mutant (1) 278 induced -0.229 0.118490945 -0.027134426 161. Rosetta 2000: Expression in erg2 deletion mutant (1) 280 repressed -0.196 0.111943148 0.021940857 163. Rosetta 2000: Expression in erg4 (haploid **7) deletion mutant (1) 282 repressed -0.057 0.109651792 0.006250152 165. Rosetta 2000: Expression in erg6 deletion mutant (1) 284 repressed -0.09 0.113021378 0.010171924 172. Rosetta 2000: Expression in fus2 deletion mutant (1) 291 induced 0.066 0.100254854 0.00661682 176. Rosetta 2000: Expression in gas1 deletion mutant (1) 295 repressed 0.133 0.102759989 -0.013667079 180. Rosetta 2000: Expression in gpa2 deletion mutant (1) 299 repressed 0.05 0.112807599 -0.00564038 181. Rosetta 2000: Expression in gyp1 deletion mutant (1) 300 induced 0.086 0.110551251 0.009507408 199. Rosetta 2000: Expression in kim4 deletion mutant (1) 318 repressed 0.076 0.097823936 -0.007434619 207. Rosetta 2000: Expression in med2 (haploid) deletion mutant (1) 326 repressed 0.05 0.129692401 -0.00648462 209. Rosetta 2000: Expression in mrpl33 deletion mutant (1) 328 repressed 0.063 0.109551438 -0.006901741 211. Rosetta 2000: Expression in msu1 deletion mutant (1) 330 repressed 0.123 0.143804145 -0.01768791 212. Rosetta 2000: Expression in npr2 deletion mutant (1) 331 induced -0.13 0.136514656 -0.017746905 216. Rosetta 2000: Expression in pac2 deletion mutant (1) 335 repressed 0.083 0.100617999 -0.008351294 222. Rosetta 2000: Expression in pet117 deletion mutant (1) 341 repressed 0.186 0.105753361 -0.019670125 231. Rosetta 2000: Expression in rad57 deletion mutant (1) 350 repressed -0.223 0.1151545 0.025679453 241. Rosetta 2000: Expression in rpd3 (haploid) deletion mutant (1) 360 repressed 0.04 0.103564694 -0.004142588 242. Rosetta 2000: Expression in rpl12a deletion mutant (1) 361 induced -0.724 0.104985997 -0.076009862 244. Rosetta 2000: Expression in rpl27a (**4) deletion mutant (1) 363 induced 0.04 0.108091393 0.004323656 246. Rosetta 2000: Expression in rpl6b deletion mutant (1) 365 induced 0.05 0.099789488 0.004989474 247. Rosetta 2000: Expression in rpl8a deletion mutant (1) 366 induced -0.027 0.119572442 -0.003228456 248. Rosetta 2000: Expression in rps24a (**9) deletion mutant (1) 367 induced 0.103 0.099737677 0.010272981 250. Rosetta 2000: Expression in rps27b (**11) deletion mutant (1) 369 induced -0.289 0.096141243 -0.027784819 252. Rosetta 2000: Expression in rtg1 deletion mutant (1) 371 repressed 0.073 0.101731703 -0.007426414 255. Rosetta 2000: Expression in sap1 deletion mutant (1) 374 repressed 0.176 0.114976662 -0.020235892 259. Rosetta 2000: Expression in sbp1 deletion mutant (1) 378 repressed 0.08 0.129918316 -0.010393465 263. Rosetta 2000: Expression in she4 deletion mutant (1) 382 repressed -0.073 0.176998693 0.012920905 268. Rosetta 2000: Expression in sir4 deletion mutant (1) 387 induced -0.196 0.127548077 -0.024999423 270. Rosetta 2000: Expression in spf1 deletion mutant (1) 389 repressed 0.452 0.128613704 -0.058133394 286. Rosetta 2000: Expression in tec1 (haploid) deletion mutant (1) 405 repressed 0.123 0.114397872 -0.014070938 294. Rosetta 2000: Expression in utr4 deletion mutant (1) 413 repressed 0.176 0.10517317 -0.018510478 295. Rosetta 2000: Expression in vac8 deletion mutant (1) 414 repressed 0.146 0.105685213 -0.015430041 298. Rosetta 2000: Expression in vps8 deletion mutant (1) 417 repressed -0.01 0.113118932 0.001131189 307. Rosetta 2000: Expression in yea4 deletion mutant (1) 426 induced -0.063 0.112326363 -0.007076561 313. Rosetta 2000: Expression in yel033w deletion mutant (1) 432 induced -0.764 0.102106516 -0.078009378 323. Rosetta 2000: Expression in yer041w deletion mutant (1) 442 induced -0.057 0.097740851 -0.005571229 324. Rosetta 2000: Expression in yer044c (haploid) deletion mutant (1) 443 repressed 0.103 0.107522872 -0.011074856 325. Rosetta 2000: Expression in yer050c deletion mutant (1) 444 repressed 0.116 0.207692774 -0.024092362 329. Rosetta 2000: Expression in yer083c deletion mutant (1) 448 repressed 0.262 0.151103902 -0.039589222 332. Rosetta 2000: Expression in cells with CMD1 under tet promoter(1) 451 repressed 0.01 0.146542196 -0.001465422 337. Rosetta 2000: Expression in yhr011w (**14) deletion mutant (1) 456 repressed -0.12 0.119145351 0.014297442 339. Rosetta 2000: Expression in yhr031c deletion mutant (1) 458 repressed -0.179 0.150054145 0.026859692 341. Rosetta 2000: Expression in yhr039c deletion mutant (1) 460 repressed 0.027 0.104210698 -0.002813689 346. Rosetta 2000: Expression in yml005w deletion mutant (1) 465 induced 0.027 0.109644324 0.002960397 348. Rosetta 2000: Expression in yml018c deletion mutant (1) 467 induced -0.013 0.108973581 -0.001416657 353. Rosetta 2000: Expression in ymr014w deletion mutant (1) 472 induced -0.166 0.16701643 -0.027724727 364. Rosetta 2000: Expression in ymr141c deletion mutant (1) 483 repressed -0.233 0.106589339 0.024835316 368. Rosetta 2000: Expression in ymr237w deletion mutant (1) 487 repressed -0.007 0.101764843 0.000712354 371. Rosetta 2000: Expression in ymr269w deletion mutant (1) 490 induced -0.076 0.144701736 -0.010997332 373. Rosetta 2000: Expression in ymr293c deletion mutant (1) 492 repressed 0.123 0.160603062 -0.019754177 375. Rosetta 2000: Expression in yor006c deletion mutant (1) 494 induced -0.16 0.162084578 -0.025933532 381. Rosetta 2000: Expression in yor078w deletion mutant (1) 500 induced -0.432 0.171496453 -0.074086468 382. Rosetta 2000: Expression in yor080w (**3) deletion mutant (1) 501 repressed 0.023 0.113399459 -0.002608188 386. Rosetta 2000: Expression in cells with CDC42 under tet promoter(1) 505 repressed 0.183 0.111767644 -0.020453479 387. Rosetta 2000: Expression in cells with ERG11 under tet promoter(1) 506 repressed 0.502 0.127763256 -0.064137155 390. Rosetta 2000: Expression in cells with IDI1 under tet promoter(1) 509 repressed 0.126 0.137086445 -0.017272892 391. Rosetta 2000: Expression in cells with KAR2 under tet promoter(1) 510 repressed 0.502 0.17925224 -0.089984625 392. Rosetta 2000: Expression in cells with PMA1 under tet promoter(1) 511 repressed -0.458 0.116749907 0.053471457 395. Rosetta 2000: Expression in response to 2-deoxy-D-glucose(1) 514 induced 0.146 0.100487304 0.014671146 398. Rosetta 2000: Expression in response to Doxycycline(1) 517 repressed -0.07 0.119669996 0.0083769 402. Rosetta 2000: Expression in response to Itraconazole(1) 521 repressed 0.076 0.159065534 -0.012088981 404. Rosetta 2000: Expression in response to MMS(1) 523 repressed 0.169 0.106922143 -0.018069842 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(1) 527 repressed 0.41 0.172459391 -0.07070835 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(2) 528 repressed 0.17 0.165570388 -0.028146966 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(6) 532 induced 0.07 0.107626027 0.007533822 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(7) 533 induced -0.13 0.09596714 -0.012475728 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(11) 537 induced -0.18 0.10332711 -0.01859888 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(1) 540 repressed 0.48 0.179206497 -0.086019119 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(2) 541 repressed 0.48 0.129973394 -0.062387229 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(6) 545 induced -0.3 0.122798264 -0.036839479 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(7) 546 induced -0.1 0.099865105 -0.00998651 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(8) 547 induced -0.32 0.139874907 -0.04475997 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(9) 548 induced -0.02 0.108321509 -0.00216643 Expression in PDR3-7 mutant(1) 556 induced -0.059 0.109236837 -0.006444973 Starvation in SK1 alpha alpha cells: 2h,4h,6h,8h(3) 566 induced 0.228 0.106995426 0.024394957 Starvation in SK1 alpha alpha cells: 2h,4h,6h,8h(4) 567 induced 0 0.217153193 0 Meiosis in W303 a alpha cells: 2h,4h,6h,8h,10h,12h(1) 571 repressed -0.153 0.105955004 0.016211116 Meiosis in W303 a alpha cells: 2h,4h,6h,8h,10h,12h(4) 574 repressed -0.221 0.096845127 0.021402773 Low-Pi vs High-Pi in WT (DBY7286)(1) 579 repressed 0.475 0.187136389 -0.088889785 pho85 vs WT(1) 582 repressed -0.105 0.126853062 0.013319572 PHO81c vs WT exp1(1) 583 repressed 0.566 0.099430078 -0.056277424 428. Expression in strain PM38 (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 585 repressed 0.525 0.248192681 -0.130301158 429. Expression in strain YHE711 (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 586 repressed 0.33 0.220368745 -0.072721686 430. Expression in strain PM38 (wild type), glucose versus ethanol: strain was shifted from medium containing dextrose as carbon source, ammonium sulfate as nirogen source, supplemented with leucine and uracil to same medium for 30 min, compared to a shift to a medium with synthetic ethanol instead of glucose for 30 min(1) 587 repressed 1.274 0.233004574 -0.296847828 431. Expression in strain PM71 (gln3 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 588 repressed 0.284 0.264981329 -0.075254698 432. Expression in strain MS221 in response to 30 min 50 nM treatment with rapamycin in YPD(1) 589 repressed 0.138 0.240008402 -0.033121159 433. Expression in strain PH2 (ure2 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 590 repressed 0.807 0.258734597 -0.20879882 434. Expression in strain P40-1A (gln3 ure2 double deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 591 repressed 0.284 0.239009055 -0.067878572 438. Expression in wild type versus strain P40-1A (gln3 ure2 double deletion) under steady state conditions in YPD(1) 595 induced 0.151 0.096549664 0.014578999 439. Expression in strain Jk9-3da (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 596 repressed 0.422 0.250776232 -0.10582757 440. Expression in strain TS19-4c in response to 30 min 50 nM treatment with rapamycin in YPD(1) 597 repressed -0.124 0.159769417 0.019811408 442. Expression in strain PM38 (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 599 repressed 0.562 0.246619212 -0.138599997 443. Expression in strain YHE710 (mks1 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 600 repressed 0.696 0.24598581 -0.171206124 444. Expression in wild type versus strain YHE710 (mks1 deletion) under steady state conditions in YPD(1) 601 induced -1.391 0.164269978 -0.228499539 445. Expression in response to 0.1% MMS for 60 min (average of 3 experiments)(1) 602 repressed 0 0.233912435 0 447. Expression in response to 0.1% MMS for 30 min(1) 604 repressed 0 0.15387276 0 448. Expression in response to 0.1% MMS for 60 min(1) 605 repressed 0 0.212736184 0 449. Expression in response to 0.1% MMS for 60 min(1) 606 repressed 0 0.217463125 0 450. Expression in response to low MNNG (8 microgram/ml) for 60 min(1) 607 repressed 0 0.174565441 0 451. Expression in response to BCNU (200 micromolar) for 60 min(1) 608 repressed 0 0.242711912 0 452. Expression in response to low 4NQO (2 microgram/ml) for 60 min(1) 609 repressed 0 0.143929705 0 453. Expression in response to gama-ray exposure (30 kilorad) for 60 min(1) 610 repressed 0 0.109129014 0 454. Expression in response to tBuOOH (5mM) for 60 min(1) 611 repressed 0 0.250576456 0 455. Expression in response to high MNNG (27 microgram/ml) for 60 min(1) 612 repressed 0 0.215686613 0 456. Expression in response to high 4NQO (8 microgram/ml) for 60 min(1) 613 repressed 0 0.155739824 0 457. Expression of G1 arrested cells (with alpha factor) in response to 0.1% MMS for 60 min(1) 614 repressed 0 0.190463032 0 458. Expression of S arrested cells (with hydroxyurea) in response to 0.1% MMS for 60 min(1) 615 repressed 0 0.225832711 0 459. Expression of G2 arrested cells (alpha nocodazole) in response to 0.1% MMS for 60 min(1) 616 repressed 0 0.212486931 0 461. Expression of rpn4 deletion in response to 0.1% MMS for 60 min(1) 618 repressed 0 0.208160474 0 462. Expression in response to 0.05% MMS for 60 min(1) 619 repressed 0 0.196796117 0 463. Expression in response to 0.1% MMS for 60 min(1) 620 repressed 0 0.224098674 0 464. Expression in response to 0.2% MMS for 60 min(1) 621 repressed 0 0.211718633 0 474. Expression in hda1 deletion(1) 631 induced -0.513 0.112943895 -0.057940218 475. Expression in hos2 deletion(1) 632 induced 0.828 0.129908514 0.107564249 476. Expression in hos3 deletion(1) 633 induced 0.017 0.113655713 0.001932147 478. Expression in haploid cells in response to rapamycin (100nM) for: 0min,15min,30min,60min,120min(2) 639 repressed -1.178 0.115942401 0.136580148 478. Expression in haploid cells in response to rapamycin (100nM) for: 0min,15min,30min,60min,120min(3) 640 repressed -1.323 0.13970407 0.184828485 478. Expression in haploid cells in response to rapamycin (100nM) for: 0min,15min,30min,60min,120min(4) 641 repressed -1.159 0.20989031 0.243262869 478. Expression in haploid cells in response to rapamycin (100nM) for: 0min,15min,30min,60min,120min(5) 642 repressed 1.155 0.111546397 -0.128836088 479. Expression in diploid cells in response to rapamycin (100nM) for: 15min,30min,90min,120min(1) 643 repressed 1.08 0.133741598 -0.144440926 479. Expression in diploid cells in response to rapamycin (100nM) for: 15min,30min,90min,120min(2) 644 repressed -1.129 0.140155433 0.158235484 479. Expression in diploid cells in response to rapamycin (100nM) for: 15min,30min,90min,120min(3) 645 repressed 0 0.139691934 0 479. Expression in diploid cells in response to rapamycin (100nM) for: 15min,30min,90min,120min(4) 646 repressed -1.282 0.19432739 0.249127714 480. Expression in haploid cells deprived to amino acids in response to rapamycin for: 15min,30min,60min,90min,120min(1) 647 repressed 1.295 0.151430172 -0.196102072 480. Expression in haploid cells deprived to amino acids in response to rapamycin for: 15min,30min,60min,90min,120min(3) 649 repressed -1.25 0.195291262 0.244114078 480. Expression in haploid cells deprived to amino acids in response to rapamycin for: 15min,30min,60min,90min,120min(4) 650 repressed -1.417 0.113419063 0.160714812 480. Expression in haploid cells deprived to amino acids in response to rapamycin for: 15min,30min,60min,90min,120min(5) 651 repressed 2.022 0.133041916 -0.269010753 481. Expression in response to heat shock: 15,30,45,60,120 min(1) 652 repressed 1.039 0.190927931 -0.198374121 481. Expression in response to heat shock: 15,30,45,60,120 min(2) 653 repressed 1.212 0.120947535 -0.146588413 481. Expression in response to heat shock: 15,30,45,60,120 min(3) 654 repressed 1.072 0.106378827 -0.114038103 481. Expression in response to heat shock: 15,30,45,60,120 min(4) 655 repressed 0.426 0.101761109 -0.043350232 481. Expression in response to heat shock: 15,30,45,60,120 min(5) 656 repressed 0.958 0.122361837 -0.11722264 482. Expression in response to acid: 10,20,40,60,80,100 min(1) 657 repressed 0.16 0.151371359 -0.024219417 482. Expression in response to acid: 10,20,40,60,80,100 min(2) 658 repressed 0.544 0.186099701 -0.101238237 482. Expression in response to acid: 10,20,40,60,80,100 min(3) 659 repressed 0.172 0.140570855 -0.024178187 482. Expression in response to acid: 10,20,40,60,80,100 min(4) 660 repressed 0.27 0.136427371 -0.03683539 483. Expression in response to alkali: 10,20,40,60,80,100 min(1) 663 repressed 1.295 0.202540142 -0.262289484 483. Expression in response to alkali: 10,20,40,60,80,100 min(2) 664 repressed 1.637 0.19568568 -0.320337458 483. Expression in response to alkali: 10,20,40,60,80,100 min(3) 665 repressed 0.598 0.15326783 -0.091654163 483. Expression in response to alkali: 10,20,40,60,80,100 min(4) 666 repressed 1.222 0.150139096 -0.183469976 483. Expression in response to alkali: 10,20,40,60,80,100 min(5) 667 repressed 0.612 0.175154966 -0.107194839 483. Expression in response to alkali: 10,20,40,60,80,100 min(6) 668 repressed 1.222 0.177289488 -0.216647755 485. Expression in response to peroxide: 10,20,40,60,120 min(1) 671 repressed 0 0.153295836 0 485. Expression in response to peroxide: 10,20,40,60,120 min(2) 672 repressed 0 0.225033607 0 485. Expression in response to peroxide: 10,20,40,60,120 min(3) 673 repressed 0 0.240353809 0 485. Expression in response to peroxide: 10,20,40,60,120 min(4) 674 repressed 0 0.240006535 0 485. Expression in response to peroxide: 10,20,40,60,120 min(5) 675 repressed 0 0.145111557 0 486. Expression in response to NaCl: 15 30 45 60 120 min(1) 676 repressed -1.701 0.104211632 0.177263986 486. Expression in response to NaCl: 15 30 45 60 120 min(2) 677 repressed 0.737 0.183712192 -0.135395885 486. Expression in response to NaCl: 15 30 45 60 120 min(3) 678 repressed 0.446 0.1992205 -0.088852343 486. Expression in response to NaCl: 15 30 45 60 120 min(4) 679 repressed 0.294 0.134975728 -0.039682864 486. Expression in response to NaCl: 15 30 45 60 120 min(5) 680 repressed -0.908 0.100982076 0.091691725 487. Expression in response to sorbitol: 15 30 45 90 120 min(1) 681 repressed -0.866 0.149087472 0.129109751 487. Expression in response to sorbitol: 15 30 45 90 120 min(2) 682 repressed 0.21 0.225828043 -0.047423889 488. Brown enviromental changes :Heat Shock 05 minutes hs-1(1) 686 repressed 0.34 0.211253734 -0.07182627 489. Brown enviromental changes :Heat Shock 10 minutes hs-1(1) 687 repressed 0.44 0.255480769 -0.112411538 490. Brown enviromental changes :Heat Shock 15 minutes hs-1(1) 688 repressed 0.89 0.256376494 -0.228175079 491. Brown enviromental changes :Heat Shock 20 minutes hs-1(1) 689 repressed 0.82 0.262317494 -0.215100345 492. Brown enviromental changes :Heat Shock 30 minutes hs-1(1) 690 repressed 0.66 0.26304845 -0.173611977 493. Brown enviromental changes :Heat Shock 40 minutes hs-1(1) 691 repressed 0.45 0.206444642 -0.092900089 494. Brown enviromental changes :Heat Shock 60 minutes hs-1(1) 692 repressed 0.32 0.202100915 -0.064672293 495. Brown enviromental changes :Heat Shock 80 minutes hs-1(1) 693 repressed 0.41 0.171337285 -0.070248287 496. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 694 induced -0.34 0.24242065 -0.082423021 497. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 695 induced -0.51 0.240063947 -0.122432613 498. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 696 induced 0 0.232171397 0 500. Brown enviromental changes :Heat Shock 015 minutes hs-2(1) 698 repressed 0.56 0.264097741 -0.147894735 501. Brown enviromental changes :Heat Shock 030inutes hs-2(1) 699 repressed 0.19 0.21247106 -0.040369501 503. Brown enviromental changes :37C to 25C shock - 15 min(1) 701 induced -0.42 0.167121453 -0.07019101 504. Brown enviromental changes :37C to 25C shock - 30 min(1) 702 induced -0.27 0.191987024 -0.051836496 505. Brown enviromental changes :37C to 25C shock - 45 min(1) 703 induced -0.2 0.196089432 -0.039217886 506. Brown enviromental changes :37C to 25C shock - 60 min(1) 704 induced -0.22 0.18242345 -0.040133159 507. Brown enviromental changes :37C to 25C shock - 90 min(1) 705 induced -0.29 0.188787808 -0.054748464 508. Brown enviromental changes :heat shock 17 to 37, 20 minutes(1) 706 repressed 0.65 0.261275672 -0.169829187 509. Brown enviromental changes :heat shock 21 to 37, 20 minutes(1) 707 repressed 1.14 0.245274459 -0.279612883 510. Brown enviromental changes :heat shock 25 to 37, 20 minutes(1) 708 repressed 1.21 0.253667382 -0.306937533 511. Brown enviromental changes :heat shock 29 to 37, 20 minutes(1) 709 repressed 0.84 0.252890217 -0.212427782 512. Brown enviromental changes :heat shock 33 to 37, 20 minutes(1) 710 repressed 0.56 0.166730302 -0.093368969 513. Brown enviromental changes :29C to 33C - 5 minutes(1) 711 repressed 0 0.198050317 0 514. Brown enviromental changes :29C to 33C - 15 minutes(1) 712 repressed 0.23 0.175601662 -0.040388382 517. Brown enviromental changes :29C +1M sorbitol to 33C + 1M sorbitol - 5 minutes(1) 715 repressed 0.49 0.185367812 -0.090830228 518. Brown enviromental changes :29C +1M sorbitol to 33C + 1M sorbitol - 15 minutes(1) 716 repressed 0.32 0.146220594 -0.04679059 523. Brown enviromental changes :constant 0.32 mM H2O2 (10 min) redo(1) 721 repressed 0.58 0.15895491 -0.092193848 524. Brown enviromental changes :constant 0.32 mM H2O2 (20 min) redo(1) 722 repressed 0.34 0.162809466 -0.055355218 525. Brown enviromental changes :constant 0.32 mM H2O2 (30 min) redo(1) 723 repressed 0.58 0.199714806 -0.115834587 526. Brown enviromental changes :constant 0.32 mM H2O2 (40 min) rescan(1) 724 repressed 0.45 0.138713125 -0.062420906 527. Brown enviromental changes :constant 0.32 mM H2O2 (50 min) redo(1) 725 repressed 0.72 0.188975448 -0.136062323 528. Brown enviromental changes :constant 0.32 mM H2O2 (60 min) redo(1) 726 repressed 0.25 0.132449122 -0.033112281 529. Brown enviromental changes :constant 0.32 mM H2O2 (80 min) redo(1) 727 repressed -0.15 0.100815441 0.015122316 534. Brown enviromental changes :1 mM Menadione (20 min) redo(1) 732 repressed 0.9 0.106100635 -0.095490571 535. Brown enviromental changes :1 mM Menadione (30 min) redo(1) 733 repressed 0.58 0.101959485 -0.059136501 536. Brown enviromental changes :1mM Menadione (40 min) redo(1) 734 repressed 0.62 0.10021658 -0.062134279 539. Brown enviromental changes :1 mM Menadione (105 min) redo(1) 737 repressed 0.58 0.100892457 -0.058517625 542. Brown enviromental changes :2.5mM DTT 005 min dtt-1(1) 740 induced -0.15 0.134113144 -0.020116972 545. Brown enviromental changes :2.5mM DTT 045 min dtt-1(1) 743 repressed 0.1 0.118996453 -0.011899645 546. Brown enviromental changes :2.5mM DTT 060 min dtt-1(1) 744 repressed 0.42 0.131355956 -0.055169501 547. Brown enviromental changes :2.5mM DTT 090 min dtt-1(1) 745 repressed 0 0.173690254 0 548. Brown enviromental changes :2.5mM DTT 120 min dtt-1(1) 746 repressed 0.29 0.179726942 -0.052120813 549. Brown enviromental changes :2.5mM DTT 180 min dtt-1(1) 747 repressed 0.16 0.228338312 -0.03653413 550. Brown enviromental changes :dtt 000 min dtt-2(1) 748 induced -0.45 0.197416916 -0.088837612 551. Brown enviromental changes :dtt 015 min dtt-2(1) 749 induced 0.21 0.20856376 0.04379839 552. Brown enviromental changes :dtt 030 min dtt-2(1) 750 induced -0.27 0.143268297 -0.03868244 553. Brown enviromental changes :dtt 060 min dtt-2(1) 751 repressed -0.22 0.131236464 0.028872022 554. Brown enviromental changes :dtt 120 min dtt-2(1) 752 repressed 0.32 0.201015683 -0.064325019 555. Brown enviromental changes :dtt 240 min dtt-2(1) 753 repressed 0.75 0.236043223 -0.177032417 557. Brown enviromental changes :1.5 mM diamide (5 min)(1) 755 repressed 0 0.159216299 0 558. Brown enviromental changes :1.5 mM diamide (10 min)(1) 756 repressed 0.25 0.211622479 -0.05290562 559. Brown enviromental changes :1.5 mM diamide (20 min)(1) 757 repressed 0.68 0.237581217 -0.161555228 560. Brown enviromental changes :1.5 mM diamide (30 min)(1) 758 repressed 0.6 0.227674571 -0.136604742 561. Brown enviromental changes :1.5 mM diamide (40 min)(1) 759 repressed 0.76 0.230645071 -0.175290254 562. Brown enviromental changes :1.5 mM diamide (50 min)(1) 760 repressed 0.37 0.236998693 -0.087689516 563. Brown enviromental changes :1.5 mM diamide (60 min)(1) 761 repressed 0.42 0.157711445 -0.066238807 564. Brown enviromental changes :1.5 mM diamide (90 min)(1) 762 repressed 0.25 0.150165235 -0.037541309 565. Brown enviromental changes :1M sorbitol - 5 min(1) 763 repressed 0.15 0.139159821 -0.020873973 566. Brown enviromental changes :1M sorbitol - 15 min(1) 764 repressed 1.08 0.242062173 -0.261427147 567. Brown enviromental changes :1M sorbitol - 30 min(1) 765 repressed 0.77 0.219974795 -0.169380592 568. Brown enviromental changes :1M sorbitol - 45 min (1) 766 repressed 0.15 0.132460792 -0.019869119 573. Brown enviromental changes :Hypo-osmotic shock - 15 min(1) 771 induced -0.4 0.184726475 -0.07389059 574. Brown enviromental changes :Hypo-osmotic shock - 30 min(1) 772 induced -0.4 0.159027259 -0.063610904 575. Brown enviromental changes :Hypo-osmotic shock - 45 min(1) 773 induced -0.29 0.128608103 -0.03729635 576. Brown enviromental changes :Hypo-osmotic shock - 60 min(1) 774 induced -0.45 0.098976848 -0.044539582 578. Brown enviromental changes :aa starv 0.5 h(1) 776 repressed 0.89 0.247755321 -0.220502236 579. Brown enviromental changes :aa starv 1 h(1) 777 repressed 0.51 0.208788275 -0.10648202 581. Brown enviromental changes :aa starv 4 h(1) 779 repressed 0.42 0.11845407 -0.049750709 582. Brown enviromental changes :aa starv 6 h(1) 780 repressed 1.2 0.116266804 -0.139520164 583. Brown enviromental changes :Nitrogen Depletion 30 min.(1) 781 repressed 0.56 0.246716299 -0.138161128 584. Brown enviromental changes :Nitrogen Depletion 1 h(1) 782 repressed 0.55 0.243125467 -0.133719007 585. Brown enviromental changes :Nitrogen Depletion 2 h(1) 783 repressed 0.36 0.167380975 -0.060257151 587. Brown enviromental changes :Nitrogen Depletion 8 h(1) 785 repressed 1.33 0.244761482 -0.325532772 588. Brown enviromental changes :Nitrogen Depletion 12 h(1) 786 repressed 1.5 0.201793316 -0.302689974 589. Brown enviromental changes :Nitrogen Depletion 1 d(1) 787 repressed 1.32 0.20709298 -0.273362733 590. Brown enviromental changes :Nitrogen Depletion 2 d(1) 788 repressed 1.19 0.185133028 -0.220308304 591. Brown enviromental changes :Nitrogen Depletion 3 d(1) 789 repressed 1.03 0.200914395 -0.206941827 592. Brown enviromental changes :Nitrogen Depletion 5 d(1) 790 repressed 0.78 0.200227782 -0.15617767 593. Brown enviromental changes :Diauxic Shift Timecourse(1) 791 induced -0.07 0.103271565 -0.00722901 603. Brown enviromental changes :YPD 6 h ypd-2(1) 794 repressed 1.18 0.246776979 -0.291196835 604. Brown enviromental changes :YPD 8 h ypd-2(1) 795 repressed 1.77 0.251332151 -0.444857907 605. Brown enviromental changes :YPD 10 h ypd-2(1) 796 repressed 1.69 0.264080471 -0.446295995 606. Brown enviromental changes :YPD 12 h ypd-2(1) 797 repressed 0.94 0.246611744 -0.231815039 607. Brown enviromental changes :YPD 1 d ypd-2(1) 798 repressed 1.7 0.207004294 -0.3519073 608. Brown enviromental changes :YPD 2 d ypd-2(1) 799 repressed 1.23 0.232020164 -0.285384802 609. Brown enviromental changes :YPD 3 d ypd-2(1) 800 repressed 2.03 0.193490478 -0.39278567 610. Brown enviromental changes :YPD 5 d ypd-2(1) 801 repressed 1.5 0.171428771 -0.257143157 612. Brown enviromental changes :YPD stationary phase 4 h ypd-1(1) 803 induced 0.14 0.10190814 0.01426714 613. Brown enviromental changes :YPD stationary phase 8 h ypd-1(1) 804 repressed 0 0.147195668 0 614. Brown enviromental changes :YPD stationary phase 12 h ypd-1(1) 805 repressed 1.46 0.26631068 -0.388813592 615. Brown enviromental changes :YPD stationary phase 1 d ypd-1(1) 806 repressed 1.46 0.261249533 -0.381424319 616. Brown enviromental changes :YPD stationary phase 2 d ypd-1(1) 807 repressed 1.3 0.26346994 -0.342510922 617. Brown enviromental changes :YPD stationary phase 3 d ypd-1(1) 808 repressed 1.58 0.250851382 -0.396345183 618. Brown enviromental changes :YPD stationary phase 5 d ypd-1(1) 809 repressed 0.48 0.225934933 -0.108448768 619. Brown enviromental changes :YPD stationary phase 7 d ypd-1(1) 810 repressed 1.1 0.230908327 -0.25399916 620. Brown enviromental changes :YPD stationary phase 13 d ypd-1(1) 811 repressed 0.36 0.213929705 -0.077014694 621. Brown enviromental changes :YPD stationary phase 22 d ypd-1(1) 812 repressed 0.79 0.233089526 -0.184140725 622. Brown enviromental changes :YPD stationary phase 28 d ypd-1(1) 813 repressed 0.9 0.229531833 -0.20657865 623. Brown enviromental changes :DBY7286 37degree heat - 20 min(1) 814 repressed 0.63 0.236836725 -0.149207137 624. Brown enviromental changes :DBYmsn2-4- 37degree heat - 20 min(1) 815 repressed 0.66 0.239399739 -0.158003827 625. Brown enviromental changes :DBYmsn2/4 (real strain) + 37degrees (20 min)(1) 816 repressed 0.56 0.183568428 -0.10279832 626. Brown enviromental changes :DBYyap1- 37degree heat - 20 min (redo)(1) 817 repressed 0.36 0.225652072 -0.081234746 627. Brown enviromental changes :DBYyap1 + 37degree heat (repeat)(1) 818 repressed 0.66 0.16082991 -0.106147741 628. Brown enviromental changes :DBY7286 + 0.3 mM H2O2 (20 min)(1) 819 repressed 0.19 0.165088686 -0.03136685 629. Brown enviromental changes :DBYmsn2msn4 (good strain) + 0.32 mM H2O2(1) 820 repressed 0.6 0.16315674 -0.097894044 630. Brown enviromental changes :DBYmsn2/4 (real strain) + 0.32 mM H2O2 (20 min)(1) 821 repressed 0.6 0.221136109 -0.132681665 631. Brown enviromental changes :DBYyap1- + 0.3 mM H2O2 (20 min)(1) 822 repressed 0.15 0.151141243 -0.022671187 632. Brown enviromental changes :DBYyap1 + 0.32 mM H2O2 (20 min)(1) 823 repressed 0.6 0.220389283 -0.13223357 634. Brown enviromental changes :MSN4 overexpression(1) 825 repressed 0.8 0.182185866 -0.145748693 636. Brown enviromental changes :ethanol car-1(1) 827 repressed 0.55 0.146751307 -0.080713219 638. Brown enviromental changes :glucose car-1(1) 829 induced -0.17 0.148912435 -0.025315114 639. Brown enviromental changes :mannose car-1(1) 830 induced -0.17 0.107265217 -0.018235087 641. Brown enviromental changes :sucrose car-1(1) 832 induced 0.55 0.114210698 0.062815884 642. Brown enviromental changes :YP ethanol vs reference pool car-2(1) 833 repressed 0.64 0.198948376 -0.12732696 643. Brown enviromental changes :YP fructose vs reference pool car-2(1) 834 induced -0.42 0.148465273 -0.062355414 645. Brown enviromental changes :YP glucose vs reference pool car-2(1) 836 induced -0.43 0.152313294 -0.065494716 648. Brown enviromental changes :YP sucrose vs reference pool car-2(1) 839 induced -0.71 0.13898245 -0.098677539 649. Brown enviromental changes :17 deg growth ct-1(1) 840 induced 0.04 0.101915609 0.004076624 650. Brown enviromental changes :21 deg growth ct-1(1) 841 induced -0.23 0.114413275 -0.026315053 652. Brown enviromental changes :29 deg growth ct-1(1) 843 induced -0.67 0.107807599 -0.072231091 656. Brown enviromental changes :steady state 21 dec C ct-2(1) 847 induced 0.07 0.177985437 0.012458981 657. Brown enviromental changes :steady state 25 dec C ct-2(1) 848 induced -0.07 0.145580657 -0.010190646 658. Brown enviromental changes :steady state 29 dec C ct-2(1) 849 induced -0.06 0.116424104 -0.006985446 674. Expression in response to oligomycin 120min(1) 862 repressed -0.403 0.097661034 0.039357397 677. Expression in gcr1 mutant YPGL+glucose versus GCR1 YPGL+glucose(1) 865 repressed 1.063 0.190613798 -0.202622467 679. Expression in GCR1 YPGL+glucose versus GCR1 YPGL(1) 867 induced -1.233 0.185318335 -0.228497507 680. Expression in GCR1 YPD versus GCR1 YPGL(1) 868 induced -0.632 0.193722461 -0.122432595 683. Expression in response to 0.4M NaCl for 20 min in wild type(1) 871 repressed 0 0.099217233 0 685. Expression in response to 0.8M NaCl for 20 min in wild type(1) 873 repressed 0 0.098480676 0 686. Expression in response to 0.8M NaCl for 20 min in hog1 mutant(1) 874 repressed 0 0.126806852 0 ( trp- 2% Glucose-203687) fus3 (+Vector) 5mM aF, 30 min. 895 repressed 0.59 0.171917009 -0.101431035 ( trp- 2% Glucose-203686) fus3 (+Vector) 5mM aF, 30 min. 896 repressed 0.5 0.123001774 -0.061500887 trp- 2% Glucose-Average fus3 (+Vector) 5mM aF, 30 min. 897 repressed 0.54 0.160815441 -0.086840338 ( trp- 2% Glucose-203792) fus3 (+Fus3K42R) 5mM aF, 30 min. 899 repressed 0.46 0.184219567 -0.084741001 ( trp- 2% Glucose-203390) fus3 (+Fus3K42R) 5mM aF, 30 min. 900 repressed 0.54 0.170954537 -0.09231545 trp- 2% Glucose-Average fus3 (+Fus3K42R) 5mM aF, 30 min. 901 repressed 0.5 0.187383775 -0.093691888 ( trp- 2% Glucose-203742) fus3 (+Fus3T180A,Y182F) 5mM aF, 30 min. 903 repressed 0.41 0.144211165 -0.059126578 ( trp- 2% Glucose-203696) fus3 (+Fus3T180A,Y182F) 5mM aF, 30 min. 904 repressed 0.32 0.126991225 -0.040637192 trp- 2% Glucose-Average fus3 (+Fus3T180A,Y182F) 5mM aF, 30 min. 905 repressed 0.36 0.14989031 -0.053960512 ( trp- 2% Glucose-228585) wt vs fus3 (+Fus3T180A,Y182F) + 5mM aF, 30 min. 911 repressed 1.15 0.11165702 -0.128405573 trp- 2% Glucose-Average wt vs fus3 (+Fus3T180A,Y182F) + 5mM aF, 30 min. 913 repressed 1.17 0.099236837 -0.1161071 Addition of 1M NaCl (90) 917 repressed 0.78 0.179589712 -0.140079976 DES460 + 0.02% MMS - 15 min 920 repressed 0.315 0.193289302 -0.06088613 DES460 + 0.02% MMS - 30 min 921 repressed 0.556 0.177492999 -0.098686107 DES460 + 0.2% MMS - 45 min 922 repressed 0.531 0.194992999 -0.103541282 DES460 + 0.02% MMS - 60 min 923 repressed 0.429 0.16163835 -0.069342852 DES460 + 0.02% MMS - 90 min 924 repressed 0.451 0.169209298 -0.076313393 DES460 + 0.02% MMS - 120 min 925 repressed 0.353 0.17209158 -0.060748328 DES459 (mec1-) + 0.02% MMS - 5 min 926 induced -0.393 0.127542009 -0.05012401 DES459 (mec1-) + 0.02% MMS - 30 min 928 repressed -0.151 0.114689134 0.017318059 dun1- + 0.02% MMs - 30 min 933 repressed -0.193 0.119034727 0.022973702 dun1- + 0.02% MMS - 90 min 934 repressed -0.142 0.100082151 0.014211665 dun1- + 0.02% MMS - 120 min 935 repressed -0.103 0.10211025 0.010517356 wt_plus_gamma_5_min 936 repressed 0.204 0.18038835 -0.036799223 wt_plus_gamma_10_min 937 repressed 0.58 0.171028286 -0.099196406 wt_plus_gamma_20_min 938 repressed 0.139 0.179967326 -0.025015458 wt_plus_gamma_30_min 939 repressed 0.035 0.151601475 -0.005306052 wt_plus_gamma_45_min 940 repressed 0.212 0.101928678 -0.02160888 wt_plus_gamma_60_min 941 repressed -0.246 0.10537528 0.025922319 DES460 (wt) - mock irradiation - 5 min 944 repressed 0.119 0.218083458 -0.025951931 mec1_plus_gamma_5_min 948 repressed 0.466 0.22304705 -0.103939925 mec1_plus_gamma_10_min 949 repressed 0.411 0.145750093 -0.059903288 mec1_plus_gamma_20_min 950 repressed 0.14 0.126851662 -0.017759233 DES459 (mec1) - mock irradiation - 5 min 956 repressed 1.224 0.12507655 -0.153093697 DES460 (wild type) + heat 20 min 960 repressed 1.13 0.127477595 -0.144049683 DES459 (mec1) + heat 20 min 961 repressed 1.065 0.23868792 -0.254202635 MHY1 (dun1) + heat 20 min 962 repressed 0.694 0.234456217 -0.162712615 DES460 + 0.02% MMS - 5 min 966 repressed -0.094 0.122220407 0.011488718 100 microM BCS 30 min 967 induced 0.342 0.124669529 0.042636979 wt-gal 973 repressed 2.339 0.160190441 -0.374685441 gal1+gal 975 repressed 0.372 0.11273665 -0.041938034 gal2+gal 976 repressed 0.502 0.134791822 -0.067665495 gal3+gal 977 repressed -0.11 0.148032114 0.016283532 gal4+gal 978 repressed -3.475 0.157114918 0.54597434 gal6+gal 980 repressed 0.365 0.140374347 -0.051236636 gal7+gal 981 repressed 0.538 0.188047517 -0.101169564 gal10+gal 982 repressed 0.658 0.135815907 -0.089366867 gal2-gal 985 repressed 1.864 0.16340786 -0.304592252 gal3-gal 986 repressed 0.106 0.143997386 -0.015263723 gal4-gal 987 repressed 1.01 0.191949683 -0.193869179 gal6-gal 989 repressed 0.644 0.159968727 -0.10301986 gal7-gal 990 repressed 0.621 0.132096714 -0.082032059 gal10-gal 991 repressed 0.864 0.155477502 -0.134332562 gal80-gal 992 repressed 2.116 0.161843727 -0.342461326 gal1gal10+gal 993 repressed 0.691 0.115216113 -0.079614334 BY4741 GAL t=30min vs. t=0 (YT00261) 996 repressed -0.02 0.107008028 0.002140161 BY4741 GAL t=60min vs. t=0 (YT00259) 997 induced 0 0.132978435 0 sfp1D GLU vs. BY4741 GLU (YT00238) 999 repressed -0.09 0.240779033 0.021670113 sfp1::GALSFP1 t=0 RAFF vs. BY4741 t=0 RAF (YT00293) 1000 repressed 0.12 0.128556292 -0.015426755 sfp1::GALSFP1 t=30min GAL vs. t=0 RAFF (YT00271) 1003 induced -0.14 0.238864824 -0.033441075 sfp1::GALSFP1 t=40min GAL vs. t=0 RAFF (YT00268) 1004 induced 0 0.156362491 0 sfp1::GALSFP1 t=50min GAL vs. t=0 RAFF (YT00265) 1005 induced -0.1 0.232689507 -0.023268951 sfp1::GALSFP1 t=60min GAL vs. t=0 RAFF (YT00267) 1006 induced -0.03 0.228925037 -0.006867751 sfp1::GALSFP1 t=90min GAL vs. t=0 RAFF (YT00266) 1007 induced -0.39 0.214026792 -0.083470449 YAL038W 1010 repressed -0.15766 0.15012416 0.023668575 YBL020W 1013 repressed 0.28472 0.155391617 -0.044243101 YBL040C 1014 repressed 0.072546 0.139329257 -0.01010778 YBR234C 1025 repressed 0.26145 0.113019978 -0.029549073 YCR013C 1028 repressed -0.054337 0.112446789 0.006110021 YDL047W 1032 repressed 0.11302 0.09539255 -0.010781266 YDL055C 1033 repressed 0.18211 0.111132842 -0.020238402 YDL060W 1034 induced -0.095092 0.097570948 -0.009278217 YDL064W 1035 repressed 0.037705 0.09879621 -0.003725111 YDR047W 1039 repressed 0.64601 0.116284541 -0.075120976 YDR091C 1041 repressed 0.18922 0.10415422 -0.019708061 YDR141C 1042 repressed 0.1599 0.151460978 -0.02421861 YEL055C 1048 induced 0.003896 0.126655153 0.000493448 YER172C 1050 repressed 0.020264 0.113708925 -0.002304198 YFL005W 1051 repressed 0.11134 0.13623413 -0.015168308 YGR048W 1057 repressed 0.32471 0.159372666 -0.051749898 YHR118C 1069 repressed -0.023377 0.100517644 0.002349801 YIR022W 1076 repressed 0.097827 0.141171583 -0.013810392 YJL039C 1079 induced 0.069702 0.142062173 0.009902018 YJL072C 1081 repressed -0.011179 0.129030527 0.001442432 YJL091C 1083 repressed 0.223 0.122788462 -0.027381827 YJL194W 1084 repressed -0.080005 0.11423357 0.009139257 YKL052C 1089 repressed 0.1602 0.121606609 -0.019481379 YKR079C 1094 repressed 0.10724 0.12951503 -0.013889192 YKR086W 1095 repressed 0.1519 0.102142457 -0.015515439 YLL035W 1098 induced -0.08776 0.098124066 -0.008611368 YLR076C 1101 repressed -0.041505 0.172344567 0.007153161 YLR101C 1103 repressed 0.013342 0.122692774 -0.001636967 YLR163C 1105 repressed 0.06639 0.119403006 -0.007927166 YLR275W 1108 repressed 0.21054 0.109020258 -0.022953125 YLR359W 1112 repressed 0.053542 0.139075803 -0.007446397 YLR378C 1113 repressed 0.13358 0.136271471 -0.018203143 YLR424W 1114 repressed 0.093014 0.112077577 -0.010424784 YLR440C 1115 repressed 0.1415 0.155816841 -0.022048083 YLR457C 1116 repressed 0.094092 0.108352315 -0.010195086 YLR459W 1117 repressed 0.21942 0.162849141 -0.035732359 YML046W 1119 repressed 0.19596 0.117235344 -0.022973438 YML130C 1120 repressed -0.070129 0.09551671 0.006698491 YMR076C 1123 repressed 0.10587 0.102734783 -0.010876532 YMR079W 1124 repressed 0.29501 0.129016524 -0.038061165 YMR128W 1125 induced 0.0083603 0.112536875 0.000940842 YMR200W 1126 repressed 0.12616 0.134973394 -0.017028243 YNL131W 1131 repressed 0.090124 0.143848488 -0.012964201 YNL150W 1132 repressed -0.037812 0.106821789 0.004039145 YNL158W 1133 repressed 0.2313 0.138694455 -0.032080027 YNL272C 1136 repressed 0.13325 0.122878547 -0.016373566 YNR035C 1138 repressed 0.27948 0.12460885 -0.034825681 YNR054C 1141 induced 0.00081025 0.096529593 0.0000782 YOL026C 1143 repressed -0.23389 0.136009149 0.03181118 YOR119C 1150 induced 0.12088 0.098614638 0.011920537 YOR146W 1152 repressed 0.032011 0.11324776 -0.003625174 YOR232W 1157 repressed 0.17259 0.098864824 -0.01706308 YOR236W 1158 repressed 0.048591 0.165217046 -0.008028061 YOR261C 1160 repressed 0.33718 0.109698002 -0.036987972 YOR335C 1164 repressed 0.017624 0.099744679 -0.0017579 YOR372C 1165 repressed -0.031332 0.125884522 0.003944214 YPL010W 1166 repressed 0.1526 0.156043689 -0.023812267 YPL126W 1170 induced -0.064036 0.11711165 -0.007499362 YPL231W 1173 repressed 0.36686 0.184131348 -0.067550426 YPL243W 1174 repressed 0.093312 0.166180919 -0.015506674 YPR033C 1175 repressed 0.19871 0.140628734 -0.027944336 YPR178W 1179 repressed 0.1307 0.139510362 -0.018234004 YBR029C 1182 repressed 0.25647 0.102137789 -0.026195279 YGL073W 1191 repressed 0.25934 0.100363611 -0.026028299 YGR198W 1196 repressed 0.10171 0.127015497 -0.012918746 YGR251W 1198 induced -0.020112 0.107371173 -0.002159449 YJL097W 1202 repressed 0.26992 0.124413275 -0.033581631 YKL033W 1204 repressed -0.011826 0.163814414 0.001937269 YLR008C 1208 repressed 0.10439 0.099471154 -0.010383794 YLR106C 1209 induced -0.0015498 0.10565814 -0.000163749 YLR229C 1211 repressed 0.11676 0.128665049 -0.015022931 YMR235C 1212 repressed 0.042329 0.09706264 -0.004108564 YNL149C 1213 repressed 0.019474 0.129463219 -0.002521167 YNL245C 1215 repressed 0.074979 0.101044156 -0.00757619 YOL005C 1218 repressed 0.14277 0.116858196 -0.016683845 YOR004W 1219 induced -0.045817 0.098416262 -0.004509138 CRZ1OE+ 1227 repressed -0.016916 0.103142737 0.001744763 HAP4OE+ 1238 repressed 0.1471835 0.10032627 -0.014766372 RFX1OE+ 1253 induced -0.13195 0.100019604 -0.013197587 SFP1OE+ 1258 induced -0.0701205 0.222083645 -0.015572616 SPS18OE+ 1262 repressed -0.064106 0.119754014 0.007676951 SPT2OE+ 1263 induced 0.047062 0.099430545 0.0046794 TOS8OE+ 1269 induced NaN 0.120709018 0 WT/cat8+ 1280 repressed 0.010361 0.098137603 -0.001016804 WT/cst6+ 1282 induced NaN 0.096981889 0 WT/msn4+ 1301 repressed NaN 0.108754668 0 WT/sfp1+ 1309 repressed -0.316012 0.116412901 0.036787874 WT/sok2+ 1312 repressed NaN 0.096061426 0 WT/yap1+ 1323 repressed -0.078417 0.100772498 0.007902277