Stp4-FL-primary_8mers_1..1111111_lteq600sum0.35thrbgdsub.txt_200 Significant Conditions: condindex ind/rep TFexpr area activator/repressor 2. Cell Cycle: Expression in response to Cln3p (set 2)(1) 3 repressed -0.09 0.105252521 0.009472727 0.0315431133691275 5. Expression during the cell cycle (alpha factor arrest and release)(3) 8 induced 0.12 0.121677091 0.014601251 8. Expression during the cell cycle (cell size selection and release)(5) 69 repressed -0.05 0.130379948 0.006518997 8. Expression during the cell cycle (cell size selection and release)(6) 70 repressed -0.47 0.116437173 0.054725471 9. Sporulation: time course: t0,t0.5,t2,t5,t7,t9,t11.5(2) 80 induced -1.571 0.161741972 -0.254096637 9. Sporulation: time course: t0,t0.5,t2,t5,t7,t9,t11.5(3) 81 induced -1.014 0.111028286 -0.112582682 10. Sporulation: Ectopic expression of Ndt80; deletion of Ndt80: early, mid,(2) 87 induced -2.614 0.108060119 -0.282469152 10. Sporulation: Ectopic expression of Ndt80; deletion of Ndt80: early, mid,(3) 88 induced -1.345 0.096194922 -0.12938217 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(7) 95 induced 0.669 0.101971154 0.068218702 12. Expression in tup1-deleted cells(1) 96 induced 0.714 0.107051438 0.076434726 18. parental strain versus evolved strain 3(1) 102 repressed -0.07 0.119047797 0.008333346 45. Expression in snf2 mutant cells in minimal medium(1) 135 induced -1.113 0.095696882 -0.10651063 47. Expression in swi1 mutant cells in minimal medium(1) 137 induced -1.727 0.10957711 -0.189239669 49. Expression in response to 50 nM alpha-factor: 0,15,30,45,60,90,120 min(6) 151 induced -0.346 0.097604089 -0.033771015 84. Expression in rst1 rst2 tec1 triple deletion mutant cells(1) 190 induced 0.317 0.09618792 0.030491571 111. Rosetta 2000: Expression in aep2 deletion mutant (1) 230 induced -0.365 0.099943055 -0.036479215 123. Rosetta 2000: Expression in bim1 (**15) deletion mutant (1) 242 induced 0.179 0.103570762 0.018539166 130. Rosetta 2000: Expression in cat8 deletion mutant (1) 249 induced -0.06 0.099768951 -0.005986137 151. Rosetta 2000: Expression in dot4 deletion mutant (1) 270 repressed 0.276 0.095638536 -0.026396236 183. Rosetta 2000: Expression in hda1 deletion mutant (1) 302 induced -0.279 0.099863237 -0.027861843 193. Rosetta 2000: Expression in imp2 deletion mutant (1) 312 induced -0.04 0.105551718 -0.004222069 196. Rosetta 2000: Expression in isw1, isw2 deletion mutant (1) 315 bimodal 0.196 0.120934466 0.023703155 213. Rosetta 2000: Expression in nrf1 deletion mutant (1) 332 induced -0.033 0.098974981 -0.003266174 245. Rosetta 2000: Expression in rpl34a (**9) deletion mutant (1) 364 repressed 0.326 0.108328043 -0.035314942 253. Rosetta 2000: Expression in rts1 deletion mutant (1) 372 induced 0.525 0.097957431 0.051427651 259. Rosetta 2000: Expression in sbp1 deletion mutant (1) 378 induced 0.651 0.116200056 0.075646236 264. Rosetta 2000: Expression in sin3 deletion mutant (1) 383 induced -1.452 0.123534354 -0.179371882 283. Rosetta 2000: Expression in swi4 deletion mutant (1) 402 induced 0.664 0.109391804 0.072636158 285. Rosetta 2000: Expression in swi6 (haploid) deletion mutant (1) 404 induced 1.199 0.106810586 0.128065893 290. Rosetta 2000: Expression in tup1 (haploid) deletion mutant (1) 409 induced 1.847 0.107653099 0.198835274 324. Rosetta 2000: Expression in yer044c (haploid) deletion mutant (1) 443 induced 0.04 0.096571135 0.003862845 342. Rosetta 2000: Expression in yil037c (haploid) deletion mutant (1) 461 induced 0.336 0.10338919 0.034738768 373. Rosetta 2000: Expression in ymr293c deletion mutant (1) 492 induced -0.306 0.100490105 -0.030749972 382. Rosetta 2000: Expression in yor080w (**3) deletion mutant (1) 501 induced 1.767 0.103379854 0.182672203 387. Rosetta 2000: Expression in cells with ERG11 under tet promoter(1) 506 induced -0.405 0.107531273 -0.043550166 389. Rosetta 2000: Expression in cells with HMG2 under tet promoter(1) 508 induced 0.272 0.105676811 0.028744093 391. Rosetta 2000: Expression in cells with KAR2 under tet promoter(1) 510 induced 0.691 0.110306199 0.076221583 399. Rosetta 2000: Expression in response to FR901,228(1) 518 induced -0.02 0.105813574 -0.002116271 400. Rosetta 2000: Expression in response to Glucosamine(1) 519 induced -0.116 0.096562733 -0.011201277 401. Rosetta 2000: Expression in response to HU(1) 520 induced 0.256 0.099284914 0.025416938 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(1) 527 induced -0.12 0.100835978 -0.012100317 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(11) 537 repressed -0.03 0.097465926 0.002923978 Meiosis in SK1 a alpha cells: 1h,2h,3h,4h,6h,8h,10h(2) 558 induced 0.427 0.097411314 0.041594631 Meiosis in W303 a alpha cells: 2h,4h,6h,8h,10h,12h(2) 572 induced 0.972 0.099843633 0.097048012 Meiosis in W303 a alpha cells: 2h,4h,6h,8h,10h,12h(3) 573 induced 0.692 0.110941001 0.076771173 Low-Pi vs High-Pi in WT (DBY7286)(1) 579 induced 1.263 0.097348768 0.122951494 428. Expression in strain PM38 (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 585 induced 0 0.101365291 0 431. Expression in strain PM71 (gln3 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 588 induced 0.216 0.105697816 0.022830728 436. Expression in wild type versus strain MS221 under steady state conditions in YPD(1) 593 repressed -1.74 0.105181105 0.183015123 437. Expression in wild type versus strain PH2 (ure2 deletion) under steady state conditions in YPD(1) 594 induced 0 0.104136016 0 439. Expression in strain Jk9-3da (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 596 induced 0 0.105411688 0 441. Expression in wild type versus strain TS19-4c under steady state conditions in YPD(1) 598 induced 0 0.123295836 0 442. Expression in strain PM38 (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 599 induced 0 0.113871359 0 451. Expression in response to BCNU (200 micromolar) for 60 min(1) 608 induced -0.292 0.110148432 -0.032163342 469. Expression in hda1 deletion(1) 626 induced -0.781 0.100115291 -0.078190042 473. Expression in ume6 deletion(1) 630 induced -0.211 0.100315534 -0.021166578 483. Expression in response to alkali: 10,20,40,60,80,100 min(1) 663 induced 0.484 0.096144978 0.046534169 483. Expression in response to alkali: 10,20,40,60,80,100 min(5) 667 induced -0.241 0.108686987 -0.026193564 486. Expression in response to NaCl: 15 30 45 60 120 min(2) 677 induced 0.298 0.107476195 0.032027906 486. Expression in response to NaCl: 15 30 45 60 120 min(3) 678 induced 0.574 0.105847647 0.06075655 487. Expression in response to sorbitol: 15 30 45 90 120 min(1) 681 induced -0.557 0.106651886 -0.0594051 487. Expression in response to sorbitol: 15 30 45 90 120 min(2) 682 induced 0.95 0.118002707 0.112102572 487. Expression in response to sorbitol: 15 30 45 90 120 min(3) 683 induced 2.077 0.108914768 0.226215974 488. Brown enviromental changes :Heat Shock 05 minutes hs-1(1) 686 induced 0.31 0.1057823 0.032792513 489. Brown enviromental changes :Heat Shock 10 minutes hs-1(1) 687 induced 0.39 0.114755414 0.044754612 490. Brown enviromental changes :Heat Shock 15 minutes hs-1(1) 688 induced 0.42 0.133189881 0.05593975 491. Brown enviromental changes :Heat Shock 20 minutes hs-1(1) 689 induced 0.07 0.120380414 0.008426629 492. Brown enviromental changes :Heat Shock 30 minutes hs-1(1) 690 induced 0.82 0.129650392 0.106313322 493. Brown enviromental changes :Heat Shock 40 minutes hs-1(1) 691 induced 0 0.112436053 0 496. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 694 repressed -0.49 0.121852128 0.059707543 497. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 695 repressed -0.3 0.106105302 0.031831591 498. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 696 repressed 0 0.11997106 0 508. Brown enviromental changes :heat shock 17 to 37, 20 minutes(1) 706 induced 0.3 0.141015217 0.042304565 509. Brown enviromental changes :heat shock 21 to 37, 20 minutes(1) 707 induced 0.19 0.123979182 0.023556045 510. Brown enviromental changes :heat shock 25 to 37, 20 minutes(1) 708 induced -0.81 0.126434373 -0.102411842 511. Brown enviromental changes :heat shock 29 to 37, 20 minutes(1) 709 induced -0.74 0.127460325 -0.09432064 512. Brown enviromental changes :heat shock 33 to 37, 20 minutes(1) 710 induced 0.08 0.101810586 0.008144847 514. Brown enviromental changes :29C to 33C - 15 minutes(1) 712 induced -0.47 0.103098394 -0.048456245 518. Brown enviromental changes :29C +1M sorbitol to 33C + 1M sorbitol - 15 minutes(1) 716 induced 0.28 0.099407674 0.027834149 527. Brown enviromental changes :constant 0.32 mM H2O2 (50 min) redo(1) 725 induced 0.71 0.096806852 0.068732865 529. Brown enviromental changes :constant 0.32 mM H2O2 (80 min) redo(1) 727 induced -0.51 0.098297237 -0.050131591 551. Brown enviromental changes :dtt 015 min dtt-2(1) 749 repressed 0.34 0.10509382 -0.035731899 555. Brown enviromental changes :dtt 240 min dtt-2(1) 753 induced 0.41 0.11118792 0.045587047 559. Brown enviromental changes :1.5 mM diamide (20 min)(1) 757 induced -0.62 0.104007188 -0.064484457 560. Brown enviromental changes :1.5 mM diamide (30 min)(1) 758 induced 0 0.118122666 0 561. Brown enviromental changes :1.5 mM diamide (40 min)(1) 759 induced -0.86 0.104671397 -0.090017401 562. Brown enviromental changes :1.5 mM diamide (50 min)(1) 760 induced -0.56 0.113818615 -0.063738424 563. Brown enviromental changes :1.5 mM diamide (60 min)(1) 761 induced 1.29 0.109111277 0.140753547 575. Brown enviromental changes :Hypo-osmotic shock - 45 min(1) 773 repressed 0.11 0.099470687 -0.010941776 584. Brown enviromental changes :Nitrogen Depletion 1 h(1) 782 induced -2.25 0.103622573 -0.233150789 603. Brown enviromental changes :YPD 6 h ypd-2(1) 794 induced 2.38 0.099631255 0.237122386 604. Brown enviromental changes :YPD 8 h ypd-2(1) 795 induced 0.79 0.114475355 0.09043553 605. Brown enviromental changes :YPD 10 h ypd-2(1) 796 induced 0.31 0.107302091 0.033263648 606. Brown enviromental changes :YPD 12 h ypd-2(1) 797 induced 1.1 0.116371826 0.128009009 607. Brown enviromental changes :YPD 1 d ypd-2(1) 798 induced 1.01 0.113518017 0.114653197 608. Brown enviromental changes :YPD 2 d ypd-2(1) 799 induced 1.55 0.112071509 0.173710838 609. Brown enviromental changes :YPD 3 d ypd-2(1) 800 induced 1.6 0.111242999 0.177988798 610. Brown enviromental changes :YPD 5 d ypd-2(1) 801 induced 1.49 0.118996919 0.17730541 614. Brown enviromental changes :YPD stationary phase 12 h ypd-1(1) 805 induced 2.02 0.096842793 0.195622442 615. Brown enviromental changes :YPD stationary phase 1 d ypd-1(1) 806 induced 0.97 0.109918783 0.106621219 616. Brown enviromental changes :YPD stationary phase 2 d ypd-1(1) 807 induced 2.84 0.113877894 0.323413219 617. Brown enviromental changes :YPD stationary phase 3 d ypd-1(1) 808 induced 3.76 0.096634615 0.363346154 618. Brown enviromental changes :YPD stationary phase 5 d ypd-1(1) 809 induced 2.75 0.115378547 0.317291005 619. Brown enviromental changes :YPD stationary phase 7 d ypd-1(1) 810 induced 2.12 0.120403286 0.255254966 620. Brown enviromental changes :YPD stationary phase 13 d ypd-1(1) 811 induced 1.12 0.108060119 0.121027334 621. Brown enviromental changes :YPD stationary phase 22 d ypd-1(1) 812 induced 1.17 0.098446602 0.115182524 622. Brown enviromental changes :YPD stationary phase 28 d ypd-1(1) 813 induced 1.2 0.121242065 0.145490478 623. Brown enviromental changes :DBY7286 37degree heat - 20 min(1) 814 induced 0.68 0.100760829 0.068517364 626. Brown enviromental changes :DBYyap1- 37degree heat - 20 min (redo)(1) 817 induced 0.38 0.112896285 0.042900588 636. Brown enviromental changes :ethanol car-1(1) 827 induced 0.44 0.126563667 0.055688013 639. Brown enviromental changes :mannose car-1(1) 830 repressed -0.14 0.109856703 0.015379938 641. Brown enviromental changes :sucrose car-1(1) 832 repressed -0.49 0.099621919 0.04881474 642. Brown enviromental changes :YP ethanol vs reference pool car-2(1) 833 induced 0.68 0.125301064 0.085204724 645. Brown enviromental changes :YP glucose vs reference pool car-2(1) 836 repressed -0.58 0.109843633 0.063709307 648. Brown enviromental changes :YP sucrose vs reference pool car-2(1) 839 repressed -0.42 0.115390683 0.048464087 661. Brown enviromental changes :steady state 36 dec C ct-2(1) 852 induced 0.34 0.110537715 0.037582823 677. Expression in gcr1 mutant YPGL+glucose versus GCR1 YPGL+glucose(1) 865 induced 0.731 0.134663928 0.098439332 678. Expression in gcr1 mutant YPGL+glucose versus gcr1 mutant YPGL(1) 866 repressed -0.485 0.1029691 0.049940014 679. Expression in GCR1 YPGL+glucose versus GCR1 YPGL(1) 867 repressed 0 0.135268857 0 680. Expression in GCR1 YPD versus GCR1 YPGL(1) 868 repressed 0.723 0.143005508 -0.103392982 Addition of 1M NaCl (90) 917 induced 0.93 0.108915235 0.101291169 DES459 (mec1-) + 0.02% MMS - 90 min 931 repressed 0.452 0.112256348 -0.050739869 mec1_plus_gamma_60_min 953 repressed -0.855 0.108569828 0.092827203 DES459 (mec1) + heat 20 min 961 induced 1.109 0.096547797 0.107071507 wt-gal 973 induced 0 0.125848581 0 gal1+gal 975 induced 0 0.111497853 0 gal3+gal 977 induced 0 0.12956124 0 gal4+gal 978 induced 0 0.115890123 0 gal7+gal 981 induced 0 0.136863798 0 gal10+gal 982 induced 0 0.119664395 0 gal2-gal 985 induced 0 0.120151699 0 gal3-gal 986 induced 0 0.13782767 0 gal4-gal 987 induced 0 0.158924104 0 gal5-gal 988 induced 0 0.115867718 0 gal6-gal 989 induced 0 0.108967046 0 gal7-gal 990 induced 0 0.104691001 0 gal10-gal 991 induced 0 0.141853062 0 gal80-gal 992 induced 0 0.103194081 0 gal1gal10+gal 993 induced 0 0.178662248 0 sfp1::GALSFP1 t=40min GAL vs. t=0 RAFF (YT00268) 1004 repressed 0.82 0.114182692 -0.093629808 YDL055C 1033 induced 0.30725 0.105492905 0.032412695 YDR062W 1040 induced 0.14286 0.097837005 0.013976995 YDR141C 1042 induced 0.2706 0.09639003 0.026083142 YDR489W 1047 induced 0.24249 0.124397872 0.03016524 YGL116W 1055 induced 0.19587 0.099538835 0.019496672 YGR048W 1057 induced 0.22131 0.097178865 0.021506655 YJL081C 1082 induced 0.33691 0.102566281 0.034555606 YJL194W 1084 induced 0.08259 0.097704444 0.00806941 YKR079C 1094 induced 0.043467 0.104352128 0.004535874 YLR086W 1102 induced 0.047354 0.100605396 0.004764068 YLR378C 1113 induced -0.20763 0.115456497 -0.023972233 YLR459W 1117 induced 0.32068 0.104691001 0.03357231 YML130C 1120 induced 0.1786 0.096599608 0.01725269 YMR043W 1122 induced 0.083451 0.098305172 0.008203665 YMR079W 1124 induced -0.11755 0.119418409 -0.014037634 YNR035C 1138 induced 0.13519 0.107833271 0.01457798 YOR204W 1155 induced -0.1414 0.096857263 -0.013695617 YOR232W 1157 induced 0.029819 0.102754388 0.003064033 YOR335C 1164 induced 0.60966 0.102187267 0.062299489 YPL010W 1166 induced 0.23873 0.103209018 0.024639089 YPL243W 1174 induced 0.31862 0.097577016 0.031089989 YBR029C 1182 induced 0.37651 0.096634615 0.036383899 YFR037C 1190 induced 0.093413 0.097970967 0.009151762 YGR198W 1196 induced 0.30371 0.099222367 0.030134825 YJL097W 1202 induced 0.3451 0.118678118 0.040955819 YKL033W 1204 induced 0.047029 0.105123693 0.004943862 YLR005W 1207 induced 0.17385 0.099055265 0.017220758 ADR1OE+ 1224 induced 0.0310785 0.130213312 0.004046834 GAT4OE+ 1232 induced 0.325466 0.121284074 0.039473842 ROX1OE+ 1256 induced 0.0105485 0.116179518 0.00122552 XBP1OE+ 1271 induced 0.287749 0.125428491 0.036091923 YOX1OE+ 1274 induced 0.075925 0.100413088 0.007623864 WT/sok2+ 1312 induced 0.1655985 0.100958738 0.016718616