Ume6-avgv9v11-0.35bgdsub_lteq600.txt_200 Significant Conditions: condindex ind/rep TFexpr area activator/repressor 2. Cell Cycle: Expression in response to Cln3p (set 2)(1) 3 bimodal 0.04 0.118785941000747 0.00475143764002988 0.000162409337556952 5. Expression during the cell cycle (alpha factor arrest and release)(3) 8 induced 0.33 0.129971994025392 0.0428907580283794 5. Expression during the cell cycle (alpha factor arrest and release)(9) 14 repressed 0.01 0.0966364824495893 -0.000966364824495893 6. Expression during the cell cycle (cdc15 arrest and release)(1) 24 repressed -0.21 0.120474234503361 0.0252995892457058 6. Expression during the cell cycle (cdc15 arrest and release)(2) 25 repressed -0.23 0.115701082897685 0.0266112490664676 7. Expression during the cell Cycle (cdc28)(2) 49 induced 0.14 0.101168782673637 0.0141636295743092 7. Expression during the cell Cycle (cdc28)(4) 51 induced 0.23 0.10086211725168 0.0231982869678864 7. Expression during the cell Cycle (cdc28)(5) 52 induced -0.13 0.126073095593727 -0.0163895024271845 7. Expression during the cell Cycle (cdc28)(7) 54 repressed -0.05 0.117389843166542 0.0058694921583271 7. Expression during the cell Cycle (cdc28)(9) 56 repressed 0.03 0.0988237490664675 -0.00296471247199403 7. Expression during the cell Cycle (cdc28)(10) 57 induced -0.06 0.138258495145631 -0.00829550970873786 7. Expression during the cell Cycle (cdc28)(11) 58 induced -0.02 0.105245985810306 -0.00210491971620612 8. Expression during the cell cycle (cell size selection and release)(5) 69 repressed 0.01 0.101498319641524 -0.00101498319641524 8. Expression during the cell cycle (cell size selection and release)(6) 70 repressed -0.19 0.116024551904406 0.0220446648618371 8. Expression during the cell cycle (cell size selection and release)(8) 72 induced -0.21 0.1182678304705 -0.024836244398805 8. Expression during the cell cycle (cell size selection and release)(9) 73 induced 0.22 0.109567774458551 0.0241049103808812 8. Expression during the cell cycle (cell size selection and release)(12) 76 induced -0.45 0.101975821508589 -0.0458891196788651 8. Expression during the cell cycle (cell size selection and release)(13) 77 induced -0.64 0.0987009895444362 -0.0631686333084392 9. Sporulation: time course: t0,t0.5,t2,t5,t7,t9,t11.5(2) 80 induced 0.074 0.188700989544436 0.0139638732262883 9. Sporulation: time course: t0,t0.5,t2,t5,t7,t9,t11.5(3) 81 induced 0.713 0.153710791635549 0.109595794436146 9. Sporulation: time course: t0,t0.5,t2,t5,t7,t9,t11.5(4) 82 induced 0.69 0.117344566840926 0.0809677511202389 9. Sporulation: time course: t0,t0.5,t2,t5,t7,t9,t11.5(7) 85 induced 0.622 0.0973370985810306 0.060543675317401 10. Sporulation: Ectopic expression of Ndt80; deletion of Ndt80: early, mid,(2) 87 induced 0.761 0.159353061986557 0.12126768017177 10. Sporulation: Ectopic expression of Ndt80; deletion of Ndt80: early, mid,(3) 88 induced 0.811 0.145510642270351 0.118009130881255 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(7) 95 induced -0.269 0.136399365197909 -0.0366914292382375 12. Expression in tup1-deleted cells(1) 96 induced -0.015 0.099401138909634 -0.00149101708364451 14. Galactose-induced expression in med2-deleted cells(1) 98 repressed 0.494 0.114299850634802 -0.0564641262135922 15. evolved strain 1 versus evolved strain 1(1) 99 repressed -0.1 0.102039768483943 0.0102039768483943 17. parental strain versus evolved strain 2(1) 101 induced -0.2 0.107822068707991 -0.0215644137415982 18. parental strain versus evolved strain 3(1) 102 bimodal 0.06 0.128128267363704 0.00768769604182224 23. Fink: Expression in diploid tec1/tec1 deletion mutant(1) 107 repressed 0 0.120181572068708 0 26. Fink: Expression in diploid high copy TEC1(1) 110 repressed 0 0.0998604368932039 0 27. Young: Expression in rpb1 mutant(1) 111 repressed 0 0.124839899178491 0 28. Young: Expression in srb4 mutant(1) 112 repressed 0 0.0986925877520538 0 30. Young: Expression in med6 mutant(1) 114 repressed 0 0.132597087378641 0 31. Young: Expression in srb10 mutant(1) 115 induced 0 0.15478715459298 0 32. Young: Expression in swi2 mutant(1) 116 induced -0.167 0.139872106049291 -0.0233586417102316 33. Young: Expression in taf145 mutant(1) 117 induced 0 0.145313666915609 0 34. Young: Expression in taf17 mutant(1) 118 repressed 0 0.0965440627333831 0 35. Young: Expression in tfa1 mutant(1) 119 repressed -0.064 0.0999033793876027 0.00639381628080657 36. Young: Expression in kin28 mutant(1) 120 repressed 0 0.112159727408514 0 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(2) 123 induced 0.275 0.110350074682599 0.0303462705377147 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(3) 124 induced 0 0.135799570575056 0 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(4) 125 induced 0.212 0.109878174010456 0.0232941728902167 39. Young: Expression in sir2 deletion mutant(1) 129 induced 0.411 0.112857076176251 0.0463842583084392 43. Young: Expression in fcp1 deletion mutant(1) 133 repressed -0.294 0.121542195668409 0.0357334055265122 45. Expression in snf2 mutant cells in minimal medium(1) 135 induced -0.038 0.118149738610904 -0.00448969006721435 48. Expression in response to 0.15,0.5,1.5,5,15.8,50,158,500 nM alpha-factor(6) 143 repressed -0.109 0.10300644137416 0.0112277021097834 48. Expression in response to 0.15,0.5,1.5,5,15.8,50,158,500 nM alpha-factor(8) 145 repressed -0.159 0.104169156086632 0.0165628958177745 49. Expression in response to 50 nM alpha-factor: 0,15,30,45,60,90,120 min(2) 147 repressed -0.091 0.108299570575056 0.0098552609223301 49. Expression in response to 50 nM alpha-factor: 0,15,30,45,60,90,120 min(7) 152 induced -0.151 0.111434372666169 -0.0168265902725915 50. Expression in response to 50 nM alpha-factor in bni1 deletion mutant: 60,90,120 min(1) 153 repressed -0.15 0.131314413741598 0.0196971620612397 50. Expression in response to 50 nM alpha-factor in bni1 deletion mutant: 60,90,120 min(2) 154 repressed -0.001 0.107602221807319 0.000107602221807319 50. Expression in response to 50 nM alpha-factor in bni1 deletion mutant: 60,90,120 min(3) 155 repressed -0.088 0.103550224047797 0.00911241971620614 51. Expression in response to 50 nM alpha-factor in kss1 deletion mutant 30 min(1) 156 repressed -0.152 0.121544529499627 0.0184747684839433 52. Expression in response to 50 nM alpha-factor in fus3 deletion mutant 30 min(1) 157 repressed -0.134 0.115417755787901 0.0154659792755787 53. Expression in response to overproduction of Ste4p(1) 158 repressed -0.188 0.0996998693054518 0.0187435754294249 54. Expression in response to overproduction of Ste5p(1) 159 repressed -0.109 0.131291075429425 0.0143107272218073 55. Expression in response to overproduction of Ste11p(1) 160 repressed -0.13 0.117915421956684 0.0153290048543689 56. Expression in response to overproduction of Ste12p(1) 161 repressed -0.285 0.122858943241225 0.0350147988237491 57. Expression in response to alpha-factor in far1 deletion mutant cells(1) 162 repressed -0.027 0.109509428678118 0.00295675457430919 59. Expression in sst2 deletion mutant cells(1) 164 induced -0.039 0.124980395817774 -0.00487423543689319 60. Expression in response to alpha-factor in ste20 deletion mutant cells(1) 165 repressed -0.019 0.133649645257655 0.00253934325989544 66. Expression in ste5 deletion mutant cells(1) 171 induced 0.013 0.129041728902166 0.00167754247572816 68. Expression in ste11 deletion mutant cells(1) 173 induced 0.04 0.109969660194175 0.004398786407767 71. Expression in bni1 deletion mutant cells(1) 176 induced 0.049 0.136976755041075 0.00671186099701268 72. Expression in response to overproduction of activated Bni1p(1) 177 induced -0.016 0.113640309932786 -0.00181824495892458 73. Expression in response to overproduction of activated Pkc1p(1) 178 bimodal -0.048 0.104276512322629 -0.00500527259148619 75. Expression in fus3 deletion mutant cells treated with alpha-factor compared to wild-type cells treated with alpha-factor(1) 180 repressed -0.05 0.114012789395071 0.00570063946975355 77. Expression in tec1 deletion mutant cells(1) 183 induced 0.018 0.0964157020164302 0.00173548263629574 78. Expression in kss1 deletion mutant cells(1) 184 induced 0.021 0.104158420463032 0.00218732682972367 80. Expression in fus3 tec1 double deletion mutant cells(1) 186 repressed 0.029 0.120693614637789 -0.00350011482449588 81. Expression in fus3 tec1 double deletion mutant cells treated with alpha-factor compared to wild-type untreated cells(1) 187 repressed -0.04 0.114051064227035 0.0045620425690814 82. Expression in response to alpha-factor in fus3 deletion mutant cells(1) 188 repressed -0.129 0.146821321882002 0.0189399505227783 83. Expression in response to alpha-factor in fus3 tec1 double deletion mutant cells(1) 189 repressed -0.051 0.0986151045556385 0.00502937033233756 84. Expression in rst1 rst2 tec1 triple deletion mutant cells(1) 190 induced -0.06 0.144211165048544 -0.00865266990291264 87. Expression in response to a-factor in wild-type alpha cells(1) 193 repressed -0.164 0.103390123226288 0.0169559802091112 92. Expression in cna1 cna2 double mutant cells(1) 198 repressed 0 0.109777352501867 0 94. Expression in response to 1ug/mL FK506(1) 200 bimodal 0 0.0983691187453323 0 97. Church: mating type a GLUCOSE 30 C vs. mating type a GALACTOSE 30 C(1) 203 repressed 0 0.0968465272591486 0 102. Young: Expression in taf25_2 deletion mutant(1) 208 bimodal 0 0.112871545929798 0 103. Young: Expression in taf60 deletion mutant(1) 209 induced 0 0.109301717699776 0 104. Young: Expression in taf61 deletion mutant(1) 210 induced 0 0.112125186706497 0 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(1) 213 induced -0.01 0.111713498879761 -0.00111713498879761 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(2) 214 induced 0 0.133197815533981 0 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(3) 215 induced 0.32 0.102039768483943 0.0326527259148618 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(4) 216 induced 0.39 0.10625 0.0414375 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(5) 217 induced -0.3 0.1288928304705 -0.03866784914115 110. Rosetta 2000: Expression in ade2 (haploid) deletion mutant (1) 229 induced -0.455 0.11381067961165 -0.0517838592233008 111. Rosetta 2000: Expression in aep2 deletion mutant (1) 230 induced -0.153 0.129463685586258 -0.0198079438946975 112. Rosetta 2000: Expression in afg3 (haploid) deletion mutant (1) 231 induced -0.143 0.144912247946229 -0.0207224514563107 113. Rosetta 2000: Expression in ald5 deletion mutant (1) 232 repressed 0.07 0.0976120238984317 -0.00683284167289022 114. Rosetta 2000: Expression in anp1 deletion mutant (1) 233 induced -0.163 0.138526885735624 -0.0225798823749067 117. Rosetta 2000: Expression in ard1 deletion mutant (1) 236 repressed -0.163 0.0969688200149365 0.0158059176624346 121. Rosetta 2000: Expression in ase1 (**12) deletion mutant (1) 240 repressed 0.03 0.124511762509335 -0.00373535287528005 123. Rosetta 2000: Expression in bim1 (**15) deletion mutant (1) 242 induced -0.173 0.145870519044063 -0.0252355997946229 124. Rosetta 2000: Expression in bni1 (haploid) deletion mutant (1) 243 induced 0.163 0.101568334578043 0.016555638536221 125. Rosetta 2000: Expression in bub1 (haploid **2,10) deletion mutant (1) 244 induced -0.023 0.0968460604929052 -0.00222745939133682 127. Rosetta 2000: Expression in bub3 (**2,8,13) deletion mutant (1) 246 induced -0.525 0.134297983569828 -0.0705064413741597 128. Rosetta 2000: Expression in bub3 (haploid **2) deletion mutant (1) 247 induced -0.113 0.114346527259149 -0.0129211575802838 129. Rosetta 2000: Expression in bul1 deletion mutant (1) 248 induced 0.193 0.114083737864078 0.0220181614077671 131. Rosetta 2000: Expression in cbp2 deletion mutant (1) 250 induced -0.046 0.101994958924571 -0.00469176811053027 132. Rosetta 2000: Expression in cem1 deletion mutant (1) 251 induced 0.07 0.124614917849141 0.00872304424943987 141. Rosetta 2000: Expression in cnb1 deletion mutant (1) 260 induced 0.365 0.105469566840926 0.038496391896938 142. Rosetta 2000: Expression in cue1 deletion mutant (1) 261 induced -0.036 0.100099421209858 -0.00360357916355489 143. Rosetta 2000: Expression in cup5 deletion mutant (1) 262 induced -0.143 0.11680358476475 -0.0167029126213592 146. Rosetta 2000: Expression in dfr1 deletion mutant (1) 265 induced 0.106 0.0997516803584765 0.0105736781179985 147. Rosetta 2000: Expression in dig1 deletion mutant (1) 266 repressed -0.086 0.114720407020164 0.0098659550037341 150. Rosetta 2000: Expression in dig2 deletion mutant (1) 269 induced 0.01 0.113390123226288 0.00113390123226288 151. Rosetta 2000: Expression in dot4 deletion mutant (1) 270 repressed 0.256 0.119915515309933 -0.0306983719193428 153. Rosetta 2000: Expression in ecm1 (**3) deletion mutant (1) 272 induced 0.027 0.101483383121733 0.00274005134428679 154. Rosetta 2000: Expression in ecm10 deletion mutant (1) 273 induced 0.103 0.111376960418223 0.011471826923077 159. Rosetta 2000: Expression in eft2 deletion mutant (1) 278 repressed -0.013 0.105657206870799 0.00137354368932039 161. Rosetta 2000: Expression in erg2 deletion mutant (1) 280 induced -0.595 0.0955223114264376 -0.0568357752987304 166. Rosetta 2000: Expression in erp2 deletion mutant (1) 285 repressed -0.01 0.105194641523525 0.00105194641523525 169. Rosetta 2000: Expression in fks1 (haploid) deletion mutant (1) 288 induced 0.123 0.110976941747573 0.0136501638349515 171. Rosetta 2000: Expression in fre6 deletion mutant (1) 290 repressed 0.03 0.10542289021658 -0.0031626867064974 175. Rosetta 2000: Expression in gal83 deletion mutant (1) 294 repressed 0.02 0.0994431478715459 -0.00198886295743092 176. Rosetta 2000: Expression in gas1 deletion mutant (1) 295 induced -0.11 0.100409353995519 -0.0110450289395071 177. Rosetta 2000: Expression in gcn4 deletion mutant (1) 296 induced 0.033 0.104368932038835 0.00344417475728156 179. Rosetta 2000: Expression in gln3 deletion mutant (1) 298 induced 0.08 0.104660660941001 0.00837285287528008 180. Rosetta 2000: Expression in gpa2 deletion mutant (1) 299 bimodal -0.123 0.11734783420463 -0.0144337836071695 183. Rosetta 2000: Expression in hda1 deletion mutant (1) 302 induced -0.183 0.126165515309933 -0.0230882893017177 186. Rosetta 2000: Expression in hir2 deletion mutant (1) 305 induced -0.226 0.128163741598208 -0.028965005601195 187. Rosetta 2000: Expression in his1 deletion mutant (1) 306 induced -0.076 0.132173263629574 -0.0100451680358476 189. Rosetta 2000: Expression in hog1 (haploid) deletion mutant (1) 308 induced -0.09 0.109569641523525 -0.00986126773711725 191. Rosetta 2000: Expression in hpt1 deletion mutant (1) 310 induced 0.05 0.110219380134429 0.00551096900672145 193. Rosetta 2000: Expression in imp2 deletion mutant (1) 312 induced -0.093 0.111180918595967 -0.0103398254294249 195. Rosetta 2000: Expression in isw1 deletion mutant (1) 314 induced 0.143 0.103759335324869 0.0148375849514563 196. Rosetta 2000: Expression in isw1, isw2 deletion mutant (1) 315 induced 0.036 0.124210231516057 0.00447156833457805 197. Rosetta 2000: Expression in isw2 deletion mutant (1) 316 induced -0.046 0.0972717513069455 -0.00447450056011949 199. Rosetta 2000: Expression in kim4 deletion mutant (1) 318 induced -0.103 0.139407206870799 -0.0143589423076923 201. Rosetta 2000: Expression in kre1 deletion mutant (1) 320 induced -0.053 0.100807972367438 -0.00534282253547421 206. Rosetta 2000: Expression in mbp1 deletion mutant (1) 325 repressed 0.033 0.104389936519791 -0.0034448679051531 209. Rosetta 2000: Expression in mrpl33 deletion mutant (1) 328 induced -0.223 0.100929331590739 -0.0225072409447348 212. Rosetta 2000: Expression in npr2 deletion mutant (1) 331 bimodal -0.04 0.11554144884242 -0.0046216579536968 220. Rosetta 2000: Expression in pep12 deletion mutant (1) 339 induced 0.209 0.103049850634802 0.0215374187826736 221. Rosetta 2000: Expression in pet111 deletion mutant (1) 340 induced 0.04 0.118630974607916 0.00474523898431664 223. Rosetta 2000: Expression in pet127 deletion mutant (1) 342 induced -0.086 0.097083644510829 -0.00834919342793129 225. Rosetta 2000: Expression in pfd2 (**14) deletion mutant (1) 344 repressed 0.073 0.0969165421956684 -0.00707490758028379 229. Rosetta 2000: Expression in qcr2 (haploid) deletion mutant (1) 348 induced -0.209 0.147707244212099 -0.0308708140403287 231. Rosetta 2000: Expression in rad57 deletion mutant (1) 350 induced 0.043 0.098871359223301 0.00425146844660194 232. Rosetta 2000: Expression in rad6 (haploid) deletion mutant (1) 351 induced -0.05 0.122768857356236 -0.0061384428678118 237. Rosetta 2000: Expression in rip1 deletion mutant (1) 356 induced -0.14 0.113819081404033 -0.0159346713965646 240. Rosetta 2000: Expression in rnr1 (haploid **9) deletion mutant (1) 359 induced -0.07 0.132613890963406 -0.00928297236743842 241. Rosetta 2000: Expression in rpd3 (haploid) deletion mutant (1) 360 induced 0.784 0.138703790141897 0.108743771471247 242. Rosetta 2000: Expression in rpl12a deletion mutant (1) 361 repressed 0.003 0.123688853622106 -0.000371066560866318 243. Rosetta 2000: Expression in rpl20a deletion mutant (1) 362 induced 0.013 0.0983261762509335 0.00127824029126214 244. Rosetta 2000: Expression in rpl27a (**4) deletion mutant (1) 363 repressed 0.09 0.106650485436893 -0.00959854368932037 245. Rosetta 2000: Expression in rpl34a (**9) deletion mutant (1) 364 repressed 0.003 0.11257001493652 -0.00033771004480956 248. Rosetta 2000: Expression in rps24a (**9) deletion mutant (1) 367 repressed 0.359 0.105139096340553 -0.0377449355862585 250. Rosetta 2000: Expression in rps27b (**11) deletion mutant (1) 369 repressed 0.08 0.111633681852128 -0.00893069454817024 251. Rosetta 2000: Expression in rrp6 deletion mutant (1) 370 induced -0.07 0.103721527259149 -0.00726050690814043 252. Rosetta 2000: Expression in rtg1 deletion mutant (1) 371 induced 0.282 0.129499159820762 0.0365187630694549 253. Rosetta 2000: Expression in rts1 deletion mutant (1) 372 induced -0.086 0.124201829723674 -0.010681357356236 254. Rosetta 2000: Expression in rvs161 (haploid) deletion mutant (1) 373 induced -0.073 0.0955279126213592 -0.00697353762135922 256. Rosetta 2000: Expression in sap18 deletion mutant (1) 375 induced -0.12 0.0997834204630321 -0.0119740104555639 257. Rosetta 2000: Expression in sap30 deletion mutant (1) 376 induced -0.445 0.113845220313667 -0.0506611230395818 259. Rosetta 2000: Expression in sbp1 deletion mutant (1) 378 induced 0.05 0.139421209858103 0.00697106049290515 260. Rosetta 2000: Expression in scs7 deletion mutant (1) 379 induced 0.093 0.112402445855116 0.0104534274645258 261. Rosetta 2000: Expression in sgs1 deletion mutant (1) 380 induced -0.156 0.100253454070202 -0.0156395388349515 263. Rosetta 2000: Expression in she4 deletion mutant (1) 382 induced -0.472 0.116811519790889 -0.0551350373412996 264. Rosetta 2000: Expression in sin3 deletion mutant (1) 383 induced 0.761 0.167085978342046 0.127152429518297 267. Rosetta 2000: Expression in sir3 deletion mutant (1) 386 induced -0.023 0.102318427931292 -0.00235332384241972 270. Rosetta 2000: Expression in spf1 deletion mutant (1) 389 induced -0.186 0.130379480955937 -0.0242505834578043 271. Rosetta 2000: Expression in ssn6 (haploid) deletion mutant (1) 390 induced 0.784 0.126395631067961 0.0990941747572814 272. Rosetta 2000: Expression in sst2 (haploid) deletion mutant (1) 391 induced -0.13 0.124980395817774 -0.0162474514563106 274. Rosetta 2000: Expression in ste11 (haploid) deletion mutant (1) 393 induced 0.133 0.109969660194175 0.0146259648058253 276. Rosetta 2000: Expression in ste18 (haploid) deletion mutant (1) 395 repressed -0.01 0.10619212098581 0.0010619212098581 279. Rosetta 2000: Expression in ste24 (haploid) deletion mutant (1) 398 induced -0.226 0.098017643764003 -0.0221519874906647 281. Rosetta 2000: Expression in ste5 (haploid) deletion mutant (1) 400 induced 0.043 0.129041728902166 0.00554879434279314 283. Rosetta 2000: Expression in swi4 deletion mutant (1) 402 induced -0.302 0.125353808812547 -0.0378568502613892 285. Rosetta 2000: Expression in swi6 (haploid) deletion mutant (1) 404 induced -0.179 0.140857916355489 -0.0252135670276325 286. Rosetta 2000: Expression in tec1 (haploid) deletion mutant (1) 405 induced 0.01 0.100266056758775 0.00100266056758775 287. Rosetta 2000: Expression in tom6 deletion mutant (1) 406 repressed 0.043 0.10185212845407 -0.00437964152352501 289. Rosetta 2000: Expression in top3 (haploid) deletion mutant (1) 408 repressed -0.036 0.0996447908887229 0.00358721247199402 290. Rosetta 2000: Expression in tup1 (haploid) deletion mutant (1) 409 induced 0.11 0.160729555638536 0.017680251120239 291. Rosetta 2000: Expression in ubp8 deletion mutant (1) 410 induced 0.319 0.117190533980583 0.037383780339806 292. Rosetta 2000: Expression in ubr1 deletion mutant (1) 411 repressed 0.027 0.114149085138163 -0.0030820252987304 293. Rosetta 2000: Expression in ubr2 deletion mutant (1) 412 repressed 0.495 0.100918129200896 -0.0499544739544435 295. Rosetta 2000: Expression in vac8 deletion mutant (1) 414 induced -0.06 0.143450336071695 -0.0086070201643017 296. Rosetta 2000: Expression in vma8 deletion mutant (1) 415 induced -0.219 0.113324775952203 -0.0248181259335325 302. Rosetta 2000: Expression in yap1 deletion mutant (1) 421 induced -0.126 0.110079350261389 -0.013869998132935 303. Rosetta 2000: Expression in yap3 deletion mutant (1) 422 induced -0.07 0.103455470500373 -0.00724188293502611 304. Rosetta 2000: Expression in yap7 deletion mutant (1) 423 induced -0.023 0.110351941747573 -0.00253809466019418 308. Rosetta 2000: Expression in yel001c deletion mutant (1) 427 repressed -0.013 0.0984592046303211 0.00127996966019417 310. Rosetta 2000: Expression in yel010w deletion mutant (1) 429 repressed -0.156 0.109776885735624 0.0171251941747573 311. Rosetta 2000: Expression in yel020c deletion mutant (1) 430 repressed 0.003 0.113793876026886 -0.000341381628080658 313. Rosetta 2000: Expression in yel033w deletion mutant (1) 432 repressed 0.219 0.105553117998506 -0.0231161328416728 324. Rosetta 2000: Expression in yer044c (haploid) deletion mutant (1) 443 induced -0.399 0.11128640776699 -0.044403276699029 325. Rosetta 2000: Expression in yer050c deletion mutant (1) 444 induced -0.216 0.133060586258402 -0.0287410866318148 328. Rosetta 2000: Expression in yer071c deletion mutant (1) 447 induced -0.04 0.0960184839432412 -0.00384073935772965 329. Rosetta 2000: Expression in yer083c deletion mutant (1) 448 induced -0.412 0.0998875093353249 -0.0411536538461539 330. Rosetta 2000: Expression in yer084w deletion mutant (1) 449 induced -0.046 0.106011949215833 -0.00487654966392832 334. Rosetta 2000: Expression in yhl029c deletion mutant (1) 453 repressed 0.017 0.104744678864825 -0.00178065954070203 336. Rosetta 2000: Expression in yhl045w deletion mutant (1) 455 repressed 0.036 0.106169716206124 -0.00382210978342046 338. Rosetta 2000: Expression in yhr022c deletion mutant (1) 457 induced 0.183 0.127406646751307 0.0233154163554892 339. Rosetta 2000: Expression in yhr031c deletion mutant (1) 458 induced -0.07 0.117287621359223 -0.00821013349514561 342. Rosetta 2000: Expression in yil037c (haploid) deletion mutant (1) 461 induced 0.057 0.135075616131441 0.00769931011949214 344. Rosetta 2000: Expression in yjl107c (haploid) deletion mutant (1) 463 repressed -0.02 0.102638162808066 0.00205276325616132 347. Rosetta 2000: Expression in yml011c deletion mutant (1) 466 repressed 0.03 0.0987345967139656 -0.00296203790141897 353. Rosetta 2000: Expression in ymr014w deletion mutant (1) 472 repressed 0.063 0.133093726661688 -0.00838490477968634 354. Rosetta 2000: Expression in ymr025w deletion mutant (1) 473 induced -0.036 0.0997792195668409 -0.00359205190440627 361. Rosetta 2000: Expression in ymr041c deletion mutant (1) 480 induced 0.103 0.0957412247946229 0.00986134615384616 370. Rosetta 2000: Expression in ymr258c deletion mutant (1) 489 repressed -0.013 0.10317074309186 0.00134121966019418 373. Rosetta 2000: Expression in ymr293c deletion mutant (1) 492 induced -0.16 0.122837005227782 -0.0196539208364451 378. Rosetta 2000: Expression in yor021c deletion mutant (1) 497 induced 0.057 0.106039021657954 0.00604422423450338 379. Rosetta 2000: Expression in yor051c (**14) deletion mutant (1) 498 repressed -0.08 0.114884241971621 0.00919073935772968 381. Rosetta 2000: Expression in yor078w deletion mutant (1) 500 repressed 0.149 0.111245799103809 -0.0165756240664675 382. Rosetta 2000: Expression in yor080w (**3) deletion mutant (1) 501 induced -0.525 0.171883868558626 -0.0902390309932787 386. Rosetta 2000: Expression in cells with CDC42 under tet promoter(1) 505 induced -0.086 0.118815347274085 -0.0102181198655713 387. Rosetta 2000: Expression in cells with ERG11 under tet promoter(1) 506 induced -0.425 0.133171676624347 -0.0565979625653475 388. Rosetta 2000: Expression in cells with FKS1 under tet promoter(1) 507 induced 0.193 0.113872759522031 0.021977442587752 389. Rosetta 2000: Expression in cells with HMG2 under tet promoter(1) 508 induced 0.017 0.149734876773712 0.0025454929051531 391. Rosetta 2000: Expression in cells with KAR2 under tet promoter(1) 510 induced 0.093 0.11679144884242 0.0108616047423451 393. Rosetta 2000: Expression in cells with RHO1 under tet promoter(1) 512 induced -0.06 0.117716579536968 -0.00706299477221808 394. Rosetta 2000: Expression in cells with YEF3 under tet promoter(1) 513 repressed -0.13 0.0986398431665422 0.0128231796116505 396. Rosetta 2000: Expression in response to Calcofluor white(1) 515 induced 0.033 0.10807925690814 0.00356661547796862 397. Rosetta 2000: Expression in response to Cycloheximide white(1) 516 repressed -0.036 0.0969146751306945 0.003488928304705 398. Rosetta 2000: Expression in response to Doxycycline(1) 517 induced -0.153 0.136300877520538 -0.0208540342606423 400. Rosetta 2000: Expression in response to Glucosamine(1) 519 induced -0.003 0.102728248693055 -0.000308184746079165 401. Rosetta 2000: Expression in response to HU(1) 520 induced -0.359 0.144142083644511 -0.0517470080283794 402. Rosetta 2000: Expression in response to Itraconazole(1) 521 induced -0.362 0.0996597274085138 -0.036076821321882 403. Rosetta 2000: Expression in response to Lovastatin(1) 522 induced 0.033 0.133043315907394 0.004390429424944 405. Rosetta 2000: Expression in response to Nikkomycin Z(1) 524 induced 0.04 0.10179284914115 0.004071713965646 406. Rosetta 2000: Expression in response to Terbinafine(1) 525 induced -0.083 0.116740104555639 -0.00968942867811804 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(1) 527 induced -0.14 0.103416262135922 -0.0144782766990291 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(2) 528 repressed 0.16 0.115224047796863 -0.0184358476474981 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(4) 530 repressed 0.33 0.122201736370426 -0.0403265730022406 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(11) 537 induced -0.04 0.121853061986557 -0.00487412247946228 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(12) 538 induced 0.05 0.101649551904406 0.0050824775952203 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(1) 540 bimodal -0.18 0.114601848394324 -0.0206283327109783 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(4) 543 repressed 0.17 0.106012415982076 -0.0180221107169529 Expression in PDR1-3 mutant(1) 555 repressed 0.496 0.114778752800597 -0.0569302613890961 Meiosis in SK1 a alpha cells: 1h,2h,3h,4h,6h,8h,10h(2) 558 induced -0.394 0.118409727408514 -0.0466534325989545 Meiosis in SK1 a alpha cells: 1h,2h,3h,4h,6h,8h,10h(3) 559 induced -1.198 0.115072348767737 -0.137856673823749 Meiosis in SK1 a alpha cells: 1h,2h,3h,4h,6h,8h,10h(4) 560 induced -0.174 0.18609783420463 -0.0323810231516056 Meiosis in SK1 a alpha cells: 1h,2h,3h,4h,6h,8h,10h(5) 561 induced -0.76 0.108153472740851 -0.0821966392830468 Meiosis in W303 a alpha cells: 2h,4h,6h,8h,10h,12h(1) 571 induced -0.038 0.117952296489918 -0.00448218726661688 Meiosis in W303 a alpha cells: 2h,4h,6h,8h,10h,12h(2) 572 induced -0.117 0.111695294996266 -0.0130683495145631 Meiosis in W303 a alpha cells: 2h,4h,6h,8h,10h,12h(3) 573 induced -0.258 0.148948842419716 -0.0384288013442867 Meiosis in W303 a alpha cells: 2h,4h,6h,8h,10h,12h(4) 574 induced -0.385 0.105121359223301 -0.0404717233009709 Meiosis in W303 a alpha cells: 2h,4h,6h,8h,10h,12h(5) 575 induced 0.402 0.102715179238237 0.0412915020537713 Meiosis in W303 a alpha cells: 2h,4h,6h,8h,10h,12h(6) 576 induced 0.593 0.106407300224048 0.0630995290328605 Low-Pi vs High-Pi in WT (NBW7) exp2(1) 578 induced -0.12 0.0975770164301718 -0.0117092419716206 Low-Pi vs High-Pi in WT (DBY7286)(1) 579 induced -0.201 0.113730862584018 -0.0228599033793876 pho85 vs WT(1) 582 induced -0.644 0.108754200896191 -0.070037705377147 PHO81c vs WT exp1(1) 583 induced 0.176 0.098051717699776 0.0172571023151606 PHO81c vs WT exp2(1) 584 induced -0.713 0.118546956684093 -0.0845239801157583 428. Expression in strain PM38 (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 585 induced 0.251 0.132305358476475 0.0332086449775952 429. Expression in strain YHE711 (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 586 induced 0.299 0.15320855115758 0.0458093567961164 430. Expression in strain PM38 (wild type), glucose versus ethanol: strain was shifted from medium containing dextrose as carbon source, ammonium sulfate as nirogen source, supplemented with leucine and uracil to same medium for 30 min, compared to a shift to a medium with synthetic ethanol instead of glucose for 30 min(1) 587 induced 0.508 0.130388349514563 0.066237281553398 431. Expression in strain PM71 (gln3 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 588 induced 0.345 0.138201082897685 0.0476793735997013 432. Expression in strain MS221 in response to 30 min 50 nM treatment with rapamycin in YPD(1) 589 induced 0.255 0.137384708737864 0.0350331007281553 433. Expression in strain PH2 (ure2 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 590 induced 0.134 0.103784540702016 0.0139071284540701 434. Expression in strain P40-1A (gln3 ure2 double deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 591 induced 0.161 0.107120519044063 0.0172464035660941 436. Expression in wild type versus strain MS221 under steady state conditions in YPD(1) 593 repressed 0.204 0.128525952203137 -0.0262192942494399 437. Expression in wild type versus strain PH2 (ure2 deletion) under steady state conditions in YPD(1) 594 induced 0.216 0.128673917102315 0.0277935660941 438. Expression in wild type versus strain P40-1A (gln3 ure2 double deletion) under steady state conditions in YPD(1) 595 induced -0.421 0.110931198655713 -0.0467020346340552 439. Expression in strain Jk9-3da (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 596 induced 0.196 0.139831030619866 0.0274068820014937 440. Expression in strain TS19-4c in response to 30 min 50 nM treatment with rapamycin in YPD(1) 597 induced 0.324 0.102291355489171 0.0331423991784914 441. Expression in wild type versus strain TS19-4c under steady state conditions in YPD(1) 598 induced -0.047 0.1690786034354 -0.0079466943614638 442. Expression in strain PM38 (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 599 induced 0.161 0.143109596713966 0.0230406450709485 443. Expression in strain YHE710 (mks1 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 600 induced 0.22 0.14836071695295 0.032639357729649 451. Expression in response to BCNU (200 micromolar) for 60 min(1) 608 induced 0.454 0.114312453323376 0.0518978538088127 460. Expression of stationary phase cells in response to 0.1% MMS for 60 min(1) 617 repressed 0 0.107957897684839 0 465. Expression in rpd3 deletion(1) 622 induced 1.193 0.139167755787901 0.166027132654966 466. Expression in rpd3 deletion(1) 623 induced 0.788 0.100553117998506 0.0792358569828227 467. Expression in sin3 deletion(1) 624 induced 1.756 0.136692494398805 0.240032020164302 469. Expression in hda1 deletion(1) 626 induced 0.304 0.155437359970127 0.0472529574309186 470. Expression in hda1 deletion(1) 627 induced -0.012 0.137817401045556 -0.00165380881254667 471. Expression in sin3 deletion(1) 628 induced 0.36 0.108261762509335 0.0389742345033606 472. Expression in sap3 deletion(1) 629 induced 0.232 0.118808812546677 0.0275636445108291 473. Expression in ume6 deletion(1) 630 induced -3.207 0.202081777445855 -0.648076260268857 474. Expression in hda1 deletion(1) 631 induced -0.969 0.115011669156087 -0.111446307412248 475. Expression in hos2 deletion(1) 632 induced -0.868 0.115385548917102 -0.100154656460045 477. Expression in response to trichostatin A (TSA): 15min,30min,60min,120min(2) 635 induced 0.286 0.103839152352502 0.0296979975728156 477. Expression in response to trichostatin A (TSA): 15min,30min,60min,120min(3) 636 induced -0.547 0.12007001493652 -0.0656782981702764 477. Expression in response to trichostatin A (TSA): 15min,30min,60min,120min(4) 637 induced -0.093 0.115034540702016 -0.0106982122852875 478. Expression in haploid cells in response to rapamycin (100nM) for: 0min,15min,30min,60min,120min(2) 639 induced 0 0.114097274085138 0 478. Expression in haploid cells in response to rapamycin (100nM) for: 0min,15min,30min,60min,120min(3) 640 induced 0 0.108788274831964 0 478. Expression in haploid cells in response to rapamycin (100nM) for: 0min,15min,30min,60min,120min(5) 642 induced 0 0.1409428678118 0 479. Expression in diploid cells in response to rapamycin (100nM) for: 15min,30min,90min,120min(1) 643 induced 0 0.113765403286034 0 479. Expression in diploid cells in response to rapamycin (100nM) for: 15min,30min,90min,120min(2) 644 induced 0 0.139739544436146 0 480. Expression in haploid cells deprived to amino acids in response to rapamycin for: 15min,30min,60min,90min,120min(1) 647 induced 0 0.0992989171023152 0 480. Expression in haploid cells deprived to amino acids in response to rapamycin for: 15min,30min,60min,90min,120min(3) 649 repressed 0 0.100063946975355 0 480. Expression in haploid cells deprived to amino acids in response to rapamycin for: 15min,30min,60min,90min,120min(5) 651 repressed 0 0.0964777819268111 0 481. Expression in response to heat shock: 15,30,45,60,120 min(1) 652 induced 0 0.103269697535474 0 481. Expression in response to heat shock: 15,30,45,60,120 min(4) 655 repressed 0 0.102993838685586 0 482. Expression in response to acid: 10,20,40,60,80,100 min(5) 661 induced 0.084 0.102160194174757 0.00858145631067959 482. Expression in response to acid: 10,20,40,60,80,100 min(6) 662 induced 0.072 0.0984171956684093 0.00708603808812547 483. Expression in response to alkali: 10,20,40,60,80,100 min(4) 666 induced -0.618 0.111873132935026 -0.0691375961538461 483. Expression in response to alkali: 10,20,40,60,80,100 min(5) 667 induced -0.618 0.114860903659447 -0.0709840384615382 483. Expression in response to alkali: 10,20,40,60,80,100 min(6) 668 induced -0.618 0.106368091859597 -0.0657354807692309 485. Expression in response to peroxide: 10,20,40,60,120 min(2) 672 induced -0.64 0.0979695668409261 -0.0627005227781927 485. Expression in response to peroxide: 10,20,40,60,120 min(5) 675 induced -0.417 0.125349607916355 -0.05227078650112 486. Expression in response to NaCl: 15 30 45 60 120 min(2) 677 induced 1.042 0.101761109036594 0.106035075616131 487. Expression in response to sorbitol: 15 30 45 90 120 min(1) 681 induced 0.321 0.101151512322629 0.0324696354555639 487. Expression in response to sorbitol: 15 30 45 90 120 min(2) 682 induced 0.712 0.114675597460792 0.0816490253920839 487. Expression in response to sorbitol: 15 30 45 90 120 min(3) 683 induced 2.005 0.0998833084391337 0.200266033420463 488. Brown enviromental changes :Heat Shock 05 minutes hs-1(1) 686 induced 0.01 0.140515776699029 0.00140515776699029 489. Brown enviromental changes :Heat Shock 10 minutes hs-1(1) 687 induced 0.11 0.139229368932039 0.0153152305825243 490. Brown enviromental changes :Heat Shock 15 minutes hs-1(1) 688 induced -0.14 0.157749719940254 -0.0220849607916356 491. Brown enviromental changes :Heat Shock 20 minutes hs-1(1) 689 induced -0.18 0.130316000746826 -0.0234568801344287 492. Brown enviromental changes :Heat Shock 30 minutes hs-1(1) 690 induced 0.12 0.138297236743839 0.0165956684092607 493. Brown enviromental changes :Heat Shock 40 minutes hs-1(1) 691 induced 0.39 0.132278286034354 0.0515885315533981 494. Brown enviromental changes :Heat Shock 60 minutes hs-1(1) 692 induced 0.29 0.10247572815534 0.0297179611650486 496. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 694 repressed 0 0.148642643764003 0 497. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 695 repressed -0.39 0.156544529499627 0.0610523665048545 498. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 696 repressed -0.47 0.165669809559373 0.0778648104929053 500. Brown enviromental changes :Heat Shock 015 minutes hs-2(1) 698 induced -0.23 0.118401325616131 -0.0272323048917101 501. Brown enviromental changes :Heat Shock 030inutes hs-2(1) 699 induced -0.14 0.0989133681852128 -0.0138478715459298 502. Brown enviromental changes :Heat Shock 060 minutes hs-2(1) 700 repressed -0.06 0.101877800597461 0.00611266803584766 504. Brown enviromental changes :37C to 25C shock - 30 min(1) 702 repressed 0.57 0.12268997386109 -0.0699332851008213 505. Brown enviromental changes :37C to 25C shock - 45 min(1) 703 repressed 0.45 0.100301997759522 -0.0451358989917849 507. Brown enviromental changes :37C to 25C shock - 90 min(1) 705 bimodal 0.37 0.139058532486931 0.0514516570201645 508. Brown enviromental changes :heat shock 17 to 37, 20 minutes(1) 706 induced 0.32 0.136841859596714 0.0437893950709485 509. Brown enviromental changes :heat shock 21 to 37, 20 minutes(1) 707 induced -0.2 0.146749906646751 -0.0293499813293502 510. Brown enviromental changes :heat shock 25 to 37, 20 minutes(1) 708 induced 0.08 0.157492531740105 0.0125994025392084 511. Brown enviromental changes :heat shock 29 to 37, 20 minutes(1) 709 induced -0.37 0.148901699029126 -0.0550936286407766 512. Brown enviromental changes :heat shock 33 to 37, 20 minutes(1) 710 induced -0.39 0.134266710231516 -0.0523640169902912 514. Brown enviromental changes :29C to 33C - 15 minutes(1) 712 induced 0.01 0.128603902165795 0.00128603902165795 517. Brown enviromental changes :29C +1M sorbitol to 33C + 1M sorbitol - 5 minutes(1) 715 induced 0.2 0.124283513816281 0.0248567027632562 518. Brown enviromental changes :29C +1M sorbitol to 33C + 1M sorbitol - 15 minutes(1) 716 induced 0.17 0.116105302464526 0.0197379014189694 521. Brown enviromental changes :29C +1M sorbitol to 33C + *NO sorbitol - 15 minutes(1) 719 induced -0.29 0.124311053024645 -0.036050205377147 524. Brown enviromental changes :constant 0.32 mM H2O2 (20 min) redo(1) 722 induced -0.14 0.096545929798357 -0.01351643017177 525. Brown enviromental changes :constant 0.32 mM H2O2 (30 min) redo(1) 723 induced 0.03 0.114913181478715 0.00344739544436145 527. Brown enviromental changes :constant 0.32 mM H2O2 (50 min) redo(1) 725 induced -0.27 0.105210978342046 -0.0284069641523524 528. Brown enviromental changes :constant 0.32 mM H2O2 (60 min) redo(1) 726 induced -0.26 0.113117531740105 -0.0294105582524273 529. Brown enviromental changes :constant 0.32 mM H2O2 (80 min) redo(1) 727 induced -0.02 0.11974141150112 -0.0023948282300224 530. Brown enviromental changes :constant 0.32 mM H2O2 (100 min) redo(1) 728 induced -0.27 0.106325616131441 -0.0287079163554891 531. Brown enviromental changes :constant 0.32 mM H2O2 (120 min) redo(1) 729 induced -0.27 0.139539768483943 -0.0376757374906646 532. Brown enviromental changes :constant 0.32 mM H2O2 (160 min) redo(1) 730 induced 0.01 0.12030573188947 0.0012030573188947 536. Brown enviromental changes :1mM Menadione (40 min) redo(1) 734 induced -0.1 0.106780246452577 -0.0106780246452577 537. Brown enviromental changes :1 mM Menadione (50 min)redo(1) 735 induced -0.12 0.103970313666916 -0.0124764376400299 550. Brown enviromental changes :dtt 000 min dtt-2(1) 748 repressed -0.05 0.12022498132935 0.0060112490664675 551. Brown enviromental changes :dtt 015 min dtt-2(1) 749 repressed 0.01 0.131490384615385 -0.00131490384615385 552. Brown enviromental changes :dtt 030 min dtt-2(1) 750 repressed 0.08 0.11417289021658 -0.0091338312173264 555. Brown enviromental changes :dtt 240 min dtt-2(1) 753 induced -0.2 0.132199402539208 -0.0264398805078416 556. Brown enviromental changes :dtt 480 min dtt-2(1) 754 induced -0.18 0.0992088312173264 -0.0178575896191188 557. Brown enviromental changes :1.5 mM diamide (5 min)(1) 755 induced -0.07 0.167222740851382 -0.0117055918595967 558. Brown enviromental changes :1.5 mM diamide (10 min)(1) 756 induced 0.02 0.141916075429425 0.0028383215085885 559. Brown enviromental changes :1.5 mM diamide (20 min)(1) 757 induced 0.06 0.140178304705004 0.00841069828230024 560. Brown enviromental changes :1.5 mM diamide (30 min)(1) 758 induced -0.06 0.143865758028379 -0.00863194548170274 561. Brown enviromental changes :1.5 mM diamide (40 min)(1) 759 induced 0.04 0.137521004480956 0.00550084017923824 562. Brown enviromental changes :1.5 mM diamide (50 min)(1) 760 induced -0.12 0.152447722180732 -0.0182937266616878 563. Brown enviromental changes :1.5 mM diamide (60 min)(1) 761 induced -0.12 0.143542289021658 -0.017225074682599 564. Brown enviromental changes :1.5 mM diamide (90 min)(1) 762 induced -0.15 0.140776699029126 -0.0211165048543689 565. Brown enviromental changes :1M sorbitol - 5 min(1) 763 induced 0 0.106091299477222 0 566. Brown enviromental changes :1M sorbitol - 15 min(1) 764 induced 0.35 0.134547703510082 0.0470916962285287 573. Brown enviromental changes :Hypo-osmotic shock - 15 min(1) 771 repressed 0.01 0.124485156833458 -0.00124485156833458 575. Brown enviromental changes :Hypo-osmotic shock - 45 min(1) 773 repressed 0.05 0.148086258401792 -0.0074043129200896 576. Brown enviromental changes :Hypo-osmotic shock - 60 min(1) 774 repressed 0.23 0.100748693054518 -0.0231721994025391 578. Brown enviromental changes :aa starv 0.5 h(1) 776 induced -0.04 0.103459671396565 -0.0041383868558626 581. Brown enviromental changes :aa starv 4 h(1) 779 induced 0.3 0.114026325616131 0.0342078976848393 582. Brown enviromental changes :aa starv 6 h(1) 780 induced 0.21 0.10284213965646 0.0215968493278566 585. Brown enviromental changes :Nitrogen Depletion 2 h(1) 783 repressed 0.08 0.104263442867812 -0.00834107542942496 587. Brown enviromental changes :Nitrogen Depletion 8 h(1) 785 induced 0.14 0.119898711725168 0.0167858196415235 588. Brown enviromental changes :Nitrogen Depletion 12 h(1) 786 bimodal 0.45 0.120324869305452 0.0541461911874534 589. Brown enviromental changes :Nitrogen Depletion 1 d(1) 787 induced 0.65 0.116413368185213 0.0756686893203884 591. Brown enviromental changes :Nitrogen Depletion 3 d(1) 789 induced 0.93 0.110212378640777 0.102497512135923 592. Brown enviromental changes :Nitrogen Depletion 5 d(1) 790 induced 1.02 0.0996163181478715 0.101608644510829 603. Brown enviromental changes :YPD 6 h ypd-2(1) 794 induced 0.07 0.114907580283794 0.00804353061986558 604. Brown enviromental changes :YPD 8 h ypd-2(1) 795 induced -0.43 0.138263162808066 -0.0594531600074684 605. Brown enviromental changes :YPD 10 h ypd-2(1) 796 induced -0.32 0.142703043315907 -0.0456649738610902 606. Brown enviromental changes :YPD 12 h ypd-2(1) 797 induced -0.54 0.136158513816281 -0.0735255974607917 607. Brown enviromental changes :YPD 1 d ypd-2(1) 798 induced -0.01 0.134318521284541 -0.00134318521284541 608. Brown enviromental changes :YPD 2 d ypd-2(1) 799 induced -0.17 0.125468166542196 -0.0213295883121733 609. Brown enviromental changes :YPD 3 d ypd-2(1) 800 induced 0.26 0.137796863330844 0.0358271844660194 610. Brown enviromental changes :YPD 5 d ypd-2(1) 801 induced -2.02 0.137109783420463 -0.276961762509335 611. Brown enviromental changes :YPD stationary phase 2 h ypd-1(1) 802 induced 0.07 0.106853528752801 0.00747974701269607 614. Brown enviromental changes :YPD stationary phase 12 h ypd-1(1) 805 induced 0 0.127532206870799 0 615. Brown enviromental changes :YPD stationary phase 1 d ypd-1(1) 806 induced -0.05 0.149859036594474 -0.0074929518297237 616. Brown enviromental changes :YPD stationary phase 2 d ypd-1(1) 807 induced 0.19 0.130686613144137 0.024830456497386 617. Brown enviromental changes :YPD stationary phase 3 d ypd-1(1) 808 induced 0.07 0.155705750560119 0.0108994025392083 618. Brown enviromental changes :YPD stationary phase 5 d ypd-1(1) 809 induced -0.22 0.147396844660194 -0.0324273058252427 619. Brown enviromental changes :YPD stationary phase 7 d ypd-1(1) 810 induced -0.01 0.150361743838686 -0.00150361743838686 620. Brown enviromental changes :YPD stationary phase 13 d ypd-1(1) 811 induced -0.71 0.159957991038088 -0.113570173637042 621. Brown enviromental changes :YPD stationary phase 22 d ypd-1(1) 812 induced -0.11 0.126858196415235 -0.0139544016056759 622. Brown enviromental changes :YPD stationary phase 28 d ypd-1(1) 813 induced 0.12 0.124993932038835 0.0149992718446602 623. Brown enviromental changes :DBY7286 37degree heat - 20 min(1) 814 induced 0.47 0.10952996639283 0.0514790842046301 625. Brown enviromental changes :DBYmsn2/4 (real strain) + 37degrees (20 min)(1) 816 repressed 0.34 0.101337752053771 -0.0344548356982821 626. Brown enviromental changes :DBYyap1- 37degree heat - 20 min (redo)(1) 817 induced -0.01 0.133831217326363 -0.00133831217326363 627. Brown enviromental changes :DBYyap1 + 37degree heat (repeat)(1) 818 bimodal 0.01 0.146594006721434 0.00146594006721434 634. Brown enviromental changes :MSN4 overexpression(1) 825 induced 0.06 0.0985278192681105 0.00591166915608663 636. Brown enviromental changes :ethanol car-1(1) 827 induced 0.09 0.144637322628827 0.0130173590365944 637. Brown enviromental changes :galactose car-1(1) 828 induced 0.15 0.102448655713219 0.0153672983569828 638. Brown enviromental changes :glucose car-1(1) 829 repressed 0.78 0.125491504854369 -0.0978833737864078 639. Brown enviromental changes :mannose car-1(1) 830 repressed 0.19 0.139173823749066 -0.0264430265123225 641. Brown enviromental changes :sucrose car-1(1) 832 repressed -0.02 0.137492531740105 0.0027498506348021 642. Brown enviromental changes :YP ethanol vs reference pool car-2(1) 833 induced 0.06 0.135373412994772 0.00812240477968632 643. Brown enviromental changes :YP fructose vs reference pool car-2(1) 834 repressed -0.3 0.125891990291262 0.0377675970873786 645. Brown enviromental changes :YP glucose vs reference pool car-2(1) 836 repressed 0.29 0.110650205377147 -0.0320885595593726 648. Brown enviromental changes :YP sucrose vs reference pool car-2(1) 839 repressed -0.07 0.134615851381628 0.00942310959671396 650. Brown enviromental changes :21 deg growth ct-1(1) 841 repressed -0.2 0.121915141896938 0.0243830283793876 651. Brown enviromental changes :25 deg growth ct-1(1) 842 repressed -0.26 0.0962383308439134 0.0250219660194175 654. Brown enviromental changes :steady state 15 dec C ct-2(1) 845 induced -0.1 0.140621732636296 -0.0140621732636296 658. Brown enviromental changes :steady state 29 dec C ct-2(1) 849 repressed -0.06 0.123106796116505 0.0073864077669903 661. Brown enviromental changes :steady state 36 dec C ct-2(1) 852 induced -0.04 0.118871825989544 -0.00475487303958176 668. Expression in Rho0 containing rtg2 deletion vs Rho0(1) 856 induced -0.208 0.0996685959671397 -0.0207310679611651 677. Expression in gcr1 mutant YPGL+glucose versus GCR1 YPGL+glucose(1) 865 induced 0.322 0.124684466019417 0.0401483980582523 678. Expression in gcr1 mutant YPGL+glucose versus gcr1 mutant YPGL(1) 866 repressed 0.138 0.141239731142644 -0.0194910828976849 679. Expression in GCR1 YPGL+glucose versus GCR1 YPGL(1) 867 repressed -0.401 0.119423076923077 0.0478886538461539 680. Expression in GCR1 YPD versus GCR1 YPGL(1) 868 repressed -0.029 0.107045369678865 0.00310431572068708 (Rich Media 2% Glucose YPD-185009) kss1 5mM aF, 30 min. 883 induced 0.04 0.100498973114264 0.00401995892457056 Rich Media 2% Glucose YPD-Average kss1 5mM aF, 30 min. 885 induced 0.16 0.106533327109783 0.0170453323375653 Addition of 1M NaCl (90) 917 bimodal 0.95 0.141256534727409 0.134193707991039 Addition of .5M NaCl in gpd1gpd2 deletion mutant (60) 918 induced -3.218 0.117662901418969 -0.378639216766242 DES459 (mec1-) + 0.02% MMS - 5 min 926 repressed -0.02 0.10560072815534 0.0021120145631068 DES459 (mec1-) + 0.02% MMS - 15 min 927 repressed -0.02 0.113340646004481 0.00226681292008962 DES459 (mec1-) + 0.02% MMS - 45 min 929 repressed 0.15 0.129393203883495 -0.0194089805825243 DES459 (mec1-) + 0.02% MMS - 60 min 930 repressed 0.31 0.120859783420463 -0.0374665328603435 DES459 (mec1-) + 0.02% MMS - 90 min 931 repressed 0.18 0.133662247946229 -0.0240592046303212 dun1- + 0.02% MMS - 90 min 934 repressed 0 0.106316280806572 0 dun1- + 0.02% MMS - 120 min 935 repressed -0.24 0.12851428304705 0.030843427931292 wt_plus_gamma_5_min 936 induced 0.415 0.120786034353996 0.0501262042569083 wt_plus_gamma_10_min 937 induced -0.16 0.123402259148618 -0.0197443614637789 wt_plus_gamma_20_min 938 bimodal -0.2 0.116434839432412 -0.0232869678864824 wt_plus_gamma_30_min 939 repressed -0.31 0.112874813293503 0.0349911921209859 wt_plus_gamma_60_min 941 repressed -0.4 0.1081357356236 0.04325429424944 wt_plus_gamma_90_min 942 induced -0.17 0.106603342046303 -0.0181225681478715 mec1_plus_gamma_20_min 950 repressed -0.3 0.106248132935026 0.0318744398805078 mec1_plus_gamma_30_min 951 repressed 0.16 0.122216672890217 -0.0195546676624347 mec1_plus_gamma_45_min 952 repressed -0.24 0.13167569081404 0.0316021657953696 mec1_plus_gamma_60_min 953 repressed -0.01 0.130004200896191 0.00130004200896191 DES459 (mec1) - mock irradiation - 5 min 956 induced 0.23 0.0983121732636296 0.0226117998506348 DES459 (mec1) + heat 20 min 961 induced 0.18 0.0980722554144884 0.0176530059746079 DES460 + 0.02% MMS - 5 min 966 induced -0.12 0.121801717699776 -0.0146162061239731 100 microM CuSO4 30 min (B) 970 induced 0.11 0.11175784167289 0.0122933625840179 wt-gal 973 induced -0.083 0.101830190440627 -0.00845190580657204 gal1+gal 975 repressed 0.292 0.0963820948469007 -0.028143571695295 gal3+gal 977 bimodal 0.173 0.116040421956684 0.0200749929985063 gal4+gal 978 induced 0.083 0.111629014189694 0.0092652081777446 gal5+gal 979 induced 0.096 0.103662247946229 0.00995157580283798 gal7+gal 981 induced 0.236 0.143435866318148 0.0338508644510829 gal10+gal 982 induced -0.086 0.129527632561613 -0.0111393764002987 gal2-gal 985 induced 0.349 0.121627613890963 0.0424480372479461 gal3-gal 986 induced 0.345 0.14410287528006 0.0497154919716207 gal4-gal 987 induced 0.605 0.138263629574309 0.0836494958924569 gal5-gal 988 induced 0.203 0.103084858103062 0.0209262261949216 gal6-gal 989 induced 0.272 0.106605209111277 0.0289966168782673 gal7-gal 990 induced 0.345 0.103216952949963 0.0356098487677372 gal10-gal 991 induced 0.236 0.133936239731143 0.0316089525765497 gal1gal10+gal 993 induced 0.173 0.143040048543689 0.0247459283980582 gal2gal80-gal 994 repressed 0.229 0.101303678117999 -0.0231985422890218 gal4gal80-gal 995 repressed 0.375 0.0961137042569081 -0.0360426390963405 BY4741 GAL t=30min vs. t=0 (YT00261) 996 repressed -0.2 0.0976787714712472 0.0195357542942494 BY4741 GAL t=60min vs. t=0 (YT00259) 997 induced 0.1 0.13481142643764 0.013481142643764 sfp1::GALSFP1 t=10min GAL vs. t=0 RAFF (YT00270) 1001 induced -0.01 0.127161127707244 -0.00127161127707244 sfp1::GALSFP1 t=20min GAL vs. t=0 RAFF (YT00234) 1002 repressed -0.17 0.132259615384615 0.0224841346153846 sfp1::GALSFP1 t=40min GAL vs. t=0 RAFF (YT00268) 1004 repressed -0.05 0.141892737117252 0.0070946368558626 sfp1::GALSFP1 t=60min GAL vs. t=0 RAFF (YT00267) 1006 repressed 0.05 0.129595313666916 -0.0064797656833458 YAL038W 1010 induced 0.098065 0.122120985810306 0.0119757944734877 YBL020W 1013 induced -0.012609 0.126125840179238 -0.00159032071882001 YBL084C 1015 induced 0.053672 0.142774458551158 0.00766299073935775 YBR002C 1016 induced 0.10014 0.110595593726662 0.0110750427557879 YBR088C 1018 induced -0.13612 0.141907673637043 -0.0193164725354743 YBR142W 1019 induced -0.026138 0.100410287528006 -0.00262452409540702 YBR192W 1022 induced -0.0098063 0.10018997386109 -0.000982492940674007 YBR196C 1024 induced -0.11103 0.12211211725168 -0.013558108378454 YBR243C 1026 induced -0.10977 0.106317214339059 -0.0116704406179985 YCR013C 1028 induced 0.014914 0.102421116504854 0.00152750853155339 YCR042C 1029 induced 0.034183 0.112336631814787 0.00384000308532486 YDL047W 1032 induced 0.036242 0.111987490664675 0.00405865063666915 YDL055C 1033 induced 0.017241 0.137477595220314 0.00237025121919343 YDL064W 1035 induced 0.021459 0.100558252427184 0.00215787953883494 YDL132W 1037 induced -0.002703 0.119359129947722 -0.000322627728248693 YDR047W 1039 induced 0.24298 0.13058859223301 0.0317304161407768 YDR062W 1040 induced -0.05053 0.124406273338312 -0.00628624899178491 YDR141C 1042 induced -0.1054 0.136959951456311 -0.0144355788834952 YDR489W 1047 induced 0.079829 0.143604368932039 0.0114637931674757 YER023W 1049 induced -0.060156 0.115751493651979 -0.00696314685212845 YER172C 1050 induced -0.21267 0.134384335324869 -0.0285795165935399 YFL005W 1051 induced 0.039346 0.115452296489918 0.00454258605769231 YFL024C 1052 induced 0.14679 0.130414021657954 0.0191434742391711 YGL116W 1055 induced 0.30107 0.122140589992532 0.0367728674290516 YGR048W 1057 induced -0.039594 0.120560119492158 -0.0047734573711725 YGR172C 1061 induced -0.099148 0.102380507841673 -0.0101508225914862 YGR175C 1062 induced -0.032221 0.105600261389096 -0.00340254602221806 YHR090C 1068 induced 0.34076 0.125584858103062 0.0427942962471994 YHR118C 1069 induced 0.11122 0.126317214339059 0.0140490005787901 YHR188C 1070 induced 0.018323 0.109588778939507 0.00200799519650859 YIL003W 1072 induced 0.04675 0.11379574309186 0.00531995098954445 YIR022W 1076 induced 0.1998 0.101411034353996 0.0202619246639284 YJL081C 1082 induced 0.0095152 0.148858289768484 0.00141641639880508 YJL091C 1083 induced -0.050592 0.109530899925317 -0.00554138728902164 YJL194W 1084 induced -0.14037 0.140233849887976 -0.0196846255087752 YKL018W 1088 induced -0.058747 0.106622479462285 -0.00626375080097086 YKL052C 1089 induced 0.010278 0.120518110530246 0.00123868514002987 YKR079C 1094 induced 0.12309 0.143651045556385 0.0176820071975354 YKR086W 1095 induced 0.044671 0.10668782673637 0.00476585190814038 YLR076C 1101 induced 0.059581 0.158816280806572 0.00946243282673637 YLR086W 1102 induced 0.03168 0.142987770724421 0.00452985257654966 YLR101C 1103 induced 0.0083808 0.141216859596714 0.00118351025690814 YLR163C 1105 induced -0.028761 0.129274645257655 -0.00371806807225542 YLR291C 1109 induced 0.16348 0.137012229275579 0.0223987592419717 YLR359W 1112 induced 0.24383 0.121565533980583 0.0296413241504856 YLR378C 1113 induced -0.021574 0.141825522778193 -0.00305974382841674 YLR440C 1115 induced -0.046032 0.121046489917849 -0.00557201202389842 YLR457C 1116 induced 0.057093 0.125316467513069 0.00715469307972365 YLR459W 1117 induced 0.037546 0.161625280059746 0.00606838276512322 YML031W 1118 induced -0.12466 0.139567774458551 -0.017398518764003 YML046W 1119 induced -0.028246 0.130738890963406 -0.00369285071415237 YML130C 1120 induced -0.024225 0.114626120238984 -0.00277681776278939 YMR001C 1121 induced 0.031004 0.0963522218073189 0.00298730428491412 YMR043W 1122 induced -0.0795 0.128529219566841 -0.0102180729555639 YMR076C 1123 induced -0.01383 0.131432972367438 -0.00181771800784167 YMR079W 1124 induced -0.10739 0.141764843166542 -0.0152241265076549 YMR200W 1126 induced -0.019108 0.110242718446602 -0.00210651786407767 YMR239C 1128 induced 0.11359 0.109288648244959 0.0124140975541449 YNL131W 1131 induced 0.037307 0.119417008961912 0.00445509035334205 YNL150W 1132 induced -0.090082 0.109169622852875 -0.00983421796583269 YNL158W 1133 induced 0.040374 0.135931198655713 0.00548808621452576 YNL182C 1134 induced 0.12945 0.104526699029126 0.0135309811893204 YNL272C 1136 induced 0.084982 0.134653192681105 0.0114430976204257 YNL310C 1137 induced 0.14755 0.122813666915609 0.0181211565533981 YNR035C 1138 induced -0.04602 0.121776979088872 -0.00560417657766989 YNR043W 1139 induced -0.082922 0.118258495145631 -0.00980623093446601 YOR060C 1147 induced 0.03295 0.0983887229275579 0.00324190842046303 YOR110W 1149 induced 0.54234 0.0997134055265123 0.0540785683532487 YOR168W 1153 induced -0.0077044 0.104364731142644 -0.000804067634615386 YOR169C 1154 induced 0.09418 0.113548823749066 0.010694028220687 YOR204W 1155 induced 0.070439 0.117345967139656 0.00826573257935023 YOR232W 1157 induced -0.14186 0.118099327856609 -0.0167535706497386 YOR236W 1158 induced 0.051689 0.111813853622106 0.00577954627987304 YOR259C 1159 induced 0.092655 0.120074682598954 0.0111255197162061 YOR261C 1160 induced 0.12351 0.14103855489171 0.0174196719146751 YOR335C 1164 induced 0.047115 0.129262976101568 0.00609022511902538 YPL010W 1166 induced 0.054226 0.155244585511576 0.00841829289395072 YPL063W 1167 induced 0.073645 0.131753174010456 0.00970296250000003 YPL076W 1168 induced 0.047657 0.0964563106796116 0.00459681839805825 YPL231W 1173 induced -0.00029065 0.114898711725168 -0.0000333953105629201 YPL243W 1174 induced -0.022145 0.142400578790142 -0.00315346081730769 YPR169W 1178 induced 0.11228 0.129097274085138 0.0144950419342793 YPR178W 1179 induced 0.1771 0.139060866318148 0.024627679424944 YBR029C 1182 induced -0.11451 0.139300317401046 -0.0159512793455938 YDR054C 1183 induced 0.11465 0.114021657953697 0.0130725830843914 YDR412W 1186 induced 0.070556 0.109396471247199 0.00771857742531737 YDR527W 1187 induced 0.001752 0.109591579536968 0.000192004447348768 YER006W 1188 induced -0.01276 0.116552931292009 -0.00148721540328603 YFR037C 1190 induced 0.12191 0.123291635548917 0.0150304832897685 YGL073W 1191 induced -0.014332 0.104178491411501 -0.00149308613890963 YGL122C 1192 induced 0.061162 0.118543222554145 0.00725034057785662 YGR198W 1196 induced 0.063664 0.142365571321882 0.00906356173263629 YHR205W 1201 induced 0.077909 0.109115944734877 0.00850111413834953 YJL097W 1202 induced 0.13906 0.139916915608663 0.0194568462845407 YKL033W 1204 induced 0.019427 0.139714339058999 0.00271423046489917 YLR008C 1208 induced -0.39735 0.112805265123226 -0.0448231720967138 YLR106C 1209 induced 0.13166 0.0992517737117252 0.0130674885268857 YLR229C 1211 induced 0.30254 0.109250373412995 0.0330526079723675 YMR235C 1212 induced -0.09702 0.106541728902166 -0.0103366785380881 YNL149C 1213 induced -0.073783 0.126940814040329 -0.0093660740823376 YNL222W 1214 induced -0.041866 0.120557785660941 -0.00504727225448096 YNL245C 1215 induced 0.026273 0.147301624346527 0.0038700555764563 YNL258C 1216 induced 0.034051 0.121318147871546 0.00413100425317401 YOR077W 1220 induced -0.061289 0.11099141150112 -0.00680255261949214 YPL075W 1221 induced 0.050494 0.113372386109037 0.00572462526418971 YPR019W 1222 induced -0.0000218 0.108961911874533 -0.00000237536967886482 ADR1OE+ 1224 induced 0.008253 0.121108103061987 0.000999505174570579 BYE1OE+ 1225 induced -0.0833945 0.132042102315161 -0.0110115851015217 CUP2OE+ 1229 repressed -0.240457 0.129094940253921 0.0310417820486371 GAT4OE+ 1232 induced -0.03124 0.15680498506348 -0.00489858773338312 GIS1OE+ 1234 induced 0.077775 0.109326923076923 0.00850290144230769 HAC1OE+ 1237 repressed -0.1645315 0.157892083644511 0.0259782213601569 HAP4OE+ 1238 repressed -0.096632 0.116481982823002 0.0112558869641523 HMS1OE+ 1239 induced -0.0505195 0.115556852128454 -0.00583787439110343 MBP1OE+ 1242 induced 0.0262845 0.100945668409261 0.00265330642130322 MET4OE+ 1244 repressed -0.2484685 0.0958611837191934 0.0238184845269324 MGA1OE+ 1245 induced -0.158688 0.101681758775205 -0.0161356749365197 MIG1OE+ 1246 induced 0.079733 0.112755787901419 0.00899035723674384 RFX1OE+ 1253 induced 0.1373475 0.122169529499627 0.01677967945295 RME1OE+ 1255 induced 0.030999 0.0996989357729649 0.00309056731002614 ROX1OE+ 1256 induced 0.046412 0.133376120238984 0.00619025249253172 SKN7OE+ 1260 induced -0.0114275 0.164336725168036 -0.00187795792685773 SOK2OE+ 1261 induced -0.0920165 0.115749159820762 -0.0106508325646471 SPS18OE+ 1262 induced -0.103589 0.100014936519791 -0.0103604472591486 STP2OE+ 1265 induced 0.3536905 0.122502800597461 0.0433280767947163 SUT1OE+ 1267 repressed -0.1269355 0.100125093353249 0.0127094287873413 SWI4OE+ 1268 induced 0.202359 0.15047003360717 0.0304489655307133 TOS8OE+ 1269 induced -0.021158 0.131952483196415 -0.00279185063946975 UPC2OE+ 1270 induced 0.013676 0.101248132935026 0.00138466946601942 XBP1OE+ 1271 induced 0.0065795 0.124490291262136 0.000819083871359224 YHP1OE+ 1273 induced -0.0101195 0.112193801344287 -0.00113534517270351 YOX1OE+ 1274 induced -0.0891715 0.131388629574309 -0.0117161211820855 YPR015COE+ 1275 induced 0.006544 0.10365431292009 0.000678313823749069 ZAP1OE+ 1277 induced 0.079146 0.102663368185213 0.00812539493838687 WT/cst6+ 1282 induced 0.078834 0.112927557879014 0.00890253109783419 WT/mbp1+ 1295 induced 0.186953 0.10851428304705 0.0202870707584951 WT/sok2+ 1312 induced 0.003975 0.122722647498133 0.000487822523805079 WT/upc2+ 1321 induced NaN 0.121198655713219 0 WT/zap1+ 1328 repressed -0.0768805 0.0990655339805825 0.00761620778519417