Ykl222c-avgv9v11-0.35bgdsub_lteq600.txt_200 Significant Conditions: condindex ind/rep TFexpr area activator/repressor 290. Rosetta 2000: Expression in tup1 (haploid) deletion mutant (1) 409 induced 0.183 0.222095313666916 0.0406434424010456 0.00221358042077433 558. Brown enviromental changes :1.5 mM diamide (10 min)(1) 756 induced -0.01 0.205366878267364 -0.00205366878267364 559. Brown enviromental changes :1.5 mM diamide (20 min)(1) 757 induced -0.03 0.20113284167289 -0.0060339852501867 557. Brown enviromental changes :1.5 mM diamide (5 min)(1) 755 induced -0.03 0.19364217699776 -0.0058092653099328 12. Expression in tup1-deleted cells(1) 96 induced -0.578 0.190560586258402 -0.110144018857356 614. Brown enviromental changes :YPD stationary phase 12 h ypd-1(1) 805 induced 1.17 0.184724141150112 0.216127245145631 679. Expression in GCR1 YPGL+glucose versus GCR1 YPGL(1) 867 bimodal -0.949 0.182787528005975 -0.17346536407767 643. Brown enviromental changes :YP fructose vs reference pool car-2(1) 834 repressed 0.08 0.182471060492905 -0.0145976848394324 gal10-gal 991 induced -0.166 0.181502520537715 -0.0301294184092607 gal7+gal 981 induced -0.027 0.178948842419716 -0.00483161874533233 561. Brown enviromental changes :1.5 mM diamide (40 min)(1) 759 induced 0.2 0.178933439133682 0.0357866878267364 469. Expression in hda1 deletion(1) 626 induced -0.122 0.175900392083645 -0.0214598478342047 605. Brown enviromental changes :YPD 10 h ypd-2(1) 796 induced 0.57 0.175893857356236 0.100259498693055 560. Brown enviromental changes :1.5 mM diamide (30 min)(1) 758 induced 0.08 0.174643390589993 0.0139714712471994 617. Brown enviromental changes :YPD stationary phase 3 d ypd-1(1) 808 induced 0.75 0.174282580283794 0.130711935212846 Addition of 1M NaCl (90) 917 bimodal 0.34 0.173928771471247 0.059135782300224 615. Brown enviromental changes :YPD stationary phase 1 d ypd-1(1) 806 induced 0.58 0.173408327109783 0.100576829723674 gal4-gal 987 induced 0.09 0.173268297236744 0.015594146751307 618. Brown enviromental changes :YPD stationary phase 5 d ypd-1(1) 809 induced 0.88 0.172150858849888 0.151492755787901 sfp1::GALSFP1 t=10min GAL vs. t=0 RAFF (YT00270) 1001 induced 0 0.171328883495146 0 112. Rosetta 2000: Expression in afg3 (haploid) deletion mutant (1) 231 induced -0.1 0.171209858103062 -0.0171209858103062 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(2) 214 induced 0 0.171092699775952 0 259. Rosetta 2000: Expression in sbp1 deletion mutant (1) 378 induced -0.057 0.169332524271845 -0.00965195388349517 488. Brown enviromental changes :Heat Shock 05 minutes hs-1(1) 686 induced -0.07 0.169225168035848 -0.0118457617625094 398. Rosetta 2000: Expression in response to Doxycycline(1) 517 induced -0.14 0.168401792382375 -0.0235762509335325 604. Brown enviromental changes :YPD 8 h ypd-2(1) 795 induced 0.81 0.168345313666916 0.136359704070202 489. Brown enviromental changes :Heat Shock 10 minutes hs-1(1) 687 induced -0.18 0.166673356982823 -0.0300012042569081 gal3+gal 977 bimodal -0.236 0.166421769977595 -0.0392755377147124 517. Brown enviromental changes :29C +1M sorbitol to 33C + 1M sorbitol - 5 minutes(1) 715 induced -0.1 0.165867718446602 -0.0165867718446602 wt_plus_gamma_10_min 937 induced 0.035 0.165821508588499 0.00580375280059747 645. Brown enviromental changes :YP glucose vs reference pool car-2(1) 836 repressed -1 0.165032206870799 0.165032206870799 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(7) 95 induced 0.239 0.164723674383869 0.0393689581777447 mec1_plus_gamma_45_min 952 repressed 0.046 0.163937640029873 -0.00754113144137416 gal2-gal 985 induced 0.106 0.163433065720687 0.0173239049663928 530. Brown enviromental changes :constant 0.32 mM H2O2 (100 min) redo(1) 728 induced -0.1 0.16293502613891 -0.016293502613891 YJL097W 1202 induced 0.0028614 0.162896751306945 0.000466112764189692 498. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 696 repressed -0.14 0.162043502613891 0.0226860903659447 gal10+gal 982 induced -0.399 0.161425504107543 -0.0644087761389097 509. Brown enviromental changes :heat shock 21 to 37, 20 minutes(1) 707 induced 0.49 0.161272404779686 0.0790234783420461 wt_plus_gamma_5_min 936 induced 0.214 0.15965786034354 0.0341667821135176 619. Brown enviromental changes :YPD stationary phase 7 d ypd-1(1) 810 induced 0.68 0.159033793876027 0.108142979835698 490. Brown enviromental changes :Heat Shock 15 minutes hs-1(1) 688 induced -0.15 0.157963498879761 -0.0236945248319641 620. Brown enviromental changes :YPD stationary phase 13 d ypd-1(1) 811 induced 2.87 0.157340365944735 0.451566850261389 434. Expression in strain P40-1A (gln3 ure2 double deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 591 induced -0.024 0.1571821321882 -0.0037723711725168 677. Expression in gcr1 mutant YPGL+glucose versus GCR1 YPGL+glucose(1) 865 induced 0.705 0.156343353248693 0.110222064040329 33. Young: Expression in taf145 mutant(1) 117 induced 0 0.155992345033607 0 SUT1OE+ 1267 repressed -0.0651205 0.155954536967886 0.0101558374246172 gal1gal10+gal 993 induced 0.02 0.155694081404033 0.00311388162808066 YLR076C 1101 induced 0.065282 0.155434559372666 0.0101470789049664 SKN7OE+ 1260 induced -0.0093595 0.154979929051531 -0.0014505346459578 84. Expression in rst1 rst2 tec1 triple deletion mutant cells(1) 190 induced -0.063 0.154331123973114 -0.00972286081030618 YPL063W 1167 induced 0.016136 0.154108009708738 0.0024866868446602 430. Expression in strain PM38 (wild type), glucose versus ethanol: strain was shifted from medium containing dextrose as carbon source, ammonium sulfate as nirogen source, supplemented with leucine and uracil to same medium for 30 min, compared to a shift to a medium with synthetic ethanol instead of glucose for 30 min(1) 587 induced 0.274 0.154096807318895 0.0422225252053772 441. Expression in wild type versus strain TS19-4c under steady state conditions in YPD(1) 598 induced 0 0.154001587005228 0 431. Expression in strain PM71 (gln3 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 588 induced 0.195 0.153518950709485 0.0299361953883496 678. Expression in gcr1 mutant YPGL+glucose versus gcr1 mutant YPGL(1) 866 bimodal 0.422 0.15240571321882 0.064315210978342 621. Brown enviromental changes :YPD stationary phase 22 d ypd-1(1) 812 induced 0.98 0.152367905153099 0.149320547050037 622. Brown enviromental changes :YPD stationary phase 28 d ypd-1(1) 813 induced 0.84 0.15206497386109 0.127734578043316 510. Brown enviromental changes :heat shock 25 to 37, 20 minutes(1) 708 induced 0.54 0.151805451829724 0.081974943988051 GAT4OE+ 1232 induced 0.0194565 0.151656553398058 0.00295070573118932 636. Brown enviromental changes :ethanol car-1(1) 827 induced 0.2 0.151627613890963 0.0303255227781926 562. Brown enviromental changes :1.5 mM diamide (50 min)(1) 760 induced 0.08 0.151622479462285 0.0121297983569828 478. Expression in haploid cells in response to rapamycin (100nM) for: 0min,15min,30min,60min,120min(5) 642 induced 1.156 0.151417569081404 0.175038709858103 PHO81c vs WT exp2(1) 584 induced -0.556 0.150951736370426 -0.0839291654219569 271. Rosetta 2000: Expression in ssn6 (haploid) deletion mutant (1) 390 induced -0.329 0.150495238984317 -0.0495129336258403 512. Brown enviromental changes :heat shock 33 to 37, 20 minutes(1) 710 induced 0.49 0.150323002240478 0.0736582710978342 135. Rosetta 2000: Expression in ckb2 deletion mutant (1) 254 bimodal 0.066 0.149253640776699 0.00985074029126213 616. Brown enviromental changes :YPD stationary phase 2 d ypd-1(1) 807 induced 0.6 0.148735530246453 0.0892413181478718 132. Rosetta 2000: Expression in cem1 deletion mutant (1) 251 induced 0.07 0.148726661687827 0.0104108663181479 mec1_plus_gamma_60_min 953 repressed 0.079 0.148664581777446 -0.0117445019604182 YGR198W 1196 induced 0.1864 0.148570294996266 0.027693502987304 YKR079C 1094 induced 0.026256 0.147990571321882 0.00388564044062733 YOX1OE+ 1274 induced 0.0696685 0.147887415982076 0.0103030944403473 491. Brown enviromental changes :Heat Shock 20 minutes hs-1(1) 689 induced 0.21 0.147836538461538 0.031045673076923 295. Rosetta 2000: Expression in vac8 deletion mutant (1) 414 induced -0.057 0.147704443614638 -0.00841915328603437 UPC2OE+ 1270 induced 0.0347605 0.147692774458551 0.00513387468656646 606. Brown enviromental changes :YPD 12 h ypd-2(1) 797 induced 0.73 0.147544809559373 0.107707710978342 532. Brown enviromental changes :constant 0.32 mM H2O2 (160 min) redo(1) 730 induced 0.32 0.147365104555639 0.0471568334578045 443. Expression in strain YHE710 (mks1 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 600 induced 0.071 0.147003360716953 0.0104372386109037 511. Brown enviromental changes :heat shock 29 to 37, 20 minutes(1) 709 induced 0.34 0.147001960418223 0.0499806665421958 638. Brown enviromental changes :glucose car-1(1) 829 repressed 0.57 0.146922610156833 -0.0837458877893948 609. Brown enviromental changes :YPD 3 d ypd-2(1) 800 induced 0.37 0.146451176250934 0.0541869352128456 8. Expression during the cell cycle (cell size selection and release)(13) 77 induced -0.13 0.145976474981329 -0.0189769417475728 8. Expression during the cell cycle (cell size selection and release)(12) 76 induced -0.4 0.145625 -0.05825 180. Rosetta 2000: Expression in gpa2 deletion mutant (1) 299 induced -0.106 0.145574122479462 -0.015430856982823 568. Brown enviromental changes :1M sorbitol - 45 min (1) 766 induced -0.14 0.145547983569828 -0.0203767176997759 325. Rosetta 2000: Expression in yer050c deletion mutant (1) 444 induced -0.02 0.145097087378641 -0.00290194174757282 SWI4OE+ 1268 induced -0.0027595 0.145077483196415 -0.000400341314880507 43. Young: Expression in fcp1 deletion mutant(1) 133 repressed 0 0.144926250933532 0 31. Young: Expression in srb10 mutant(1) 115 induced 0 0.144664395070948 0 607. Brown enviromental changes :YPD 1 d ypd-2(1) 798 induced 0.83 0.144483289768484 0.119921130507842 gal2gal80-gal 994 repressed 0.462 0.144433812546677 -0.0667284213965648 603. Brown enviromental changes :YPD 6 h ypd-2(1) 794 induced 0.77 0.144198095593727 0.11103253360717 111. Rosetta 2000: Expression in aep2 deletion mutant (1) 230 induced 0.066 0.144171489917849 0.00951531833457804 Expression in PDR1-3 mutant(1) 555 repressed 0.057 0.144106609410007 -0.0082140767363704 563. Brown enviromental changes :1.5 mM diamide (60 min)(1) 761 induced 0.24 0.144083737864078 0.0345800970873787 gal3-gal 986 induced -0.073 0.143905899925317 -0.0105051306945481 YBL020W 1013 induced 0.21281 0.143492811799851 0.0305367052791263 SOK2OE+ 1261 bimodal -0.0191385 0.143122199402539 -0.00273914421326549 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(4) 530 repressed -0.21 0.143095126960418 0.0300499766616878 531. Brown enviromental changes :constant 0.32 mM H2O2 (120 min) redo(1) 729 induced 0.2 0.142674570575056 0.0285349141150112 YLR459W 1117 induced 0.094004 0.142674103808813 0.0134119364544437 508. Brown enviromental changes :heat shock 17 to 37, 20 minutes(1) 706 induced 0.4 0.142550410754294 0.0570201643017176 sfp1::GALSFP1 t=60min GAL vs. t=0 RAFF (YT00267) 1006 repressed 0 0.142473394324122 0 47. Expression in swi1 mutant cells in minimal medium(1) 137 repressed 0.115 0.142406646751307 -0.0163767643764003 479. Expression in diploid cells in response to rapamycin (100nM) for: 15min,30min,90min,120min(2) 644 induced -1.278 0.141889936519791 -0.181335338872293 mec1_plus_gamma_30_min 951 repressed 0.215 0.141860530246453 -0.0305000140029874 610. Brown enviromental changes :YPD 5 d ypd-2(1) 801 induced 0.21 0.141630414488424 0.029742387042569 56. Expression in response to overproduction of Ste12p(1) 161 repressed -0.124 0.141303678117999 0.0175216560866319 522. Brown enviromental changes :29C +1M sorbitol to 33C + *NO sorbitol - 30 minutes(1) 720 repressed 0.28 0.141226194921583 -0.0395433345780432 382. Rosetta 2000: Expression in yor080w (**3) deletion mutant (1) 501 induced 0.163 0.141111837191934 0.0230012294622852 529. Brown enviromental changes :constant 0.32 mM H2O2 (80 min) redo(1) 727 induced 0.41 0.140962938760269 0.0577948048917103 Addition of .5M NaCl in gpd1gpd2 deletion mutant (60) 918 induced -0.091 0.140833177744586 -0.0128158191747573 286. Rosetta 2000: Expression in tec1 (haploid) deletion mutant (1) 405 induced -0.027 0.140613330843913 -0.00379655993278565 525. Brown enviromental changes :constant 0.32 mM H2O2 (30 min) redo(1) 723 induced -0.38 0.140608663181479 -0.053431292008962 388. Rosetta 2000: Expression in cells with FKS1 under tet promoter(1) 507 induced -0.246 0.140590459297984 -0.0345852529873041 373. Rosetta 2000: Expression in ymr293c deletion mutant (1) 492 bimodal -0.023 0.140353808812547 -0.00322813760268858 YDR141C 1042 induced 0.12036 0.140344473487677 0.0168918608289768 528. Brown enviromental changes :constant 0.32 mM H2O2 (60 min) redo(1) 726 induced 0.11 0.140236650485437 0.0154260315533981 253. Rosetta 2000: Expression in rts1 deletion mutant (1) 372 induced -0.209 0.140003734129948 -0.0292607804331591 492. Brown enviromental changes :Heat Shock 30 minutes hs-1(1) 690 induced -0.17 0.139759148618372 -0.0237590552651232 608. Brown enviromental changes :YPD 2 d ypd-2(1) 799 induced 0.74 0.139699402539208 0.103377557879014 680. Expression in GCR1 YPD versus GCR1 YPGL(1) 868 bimodal -0.401 0.139440347274085 -0.0559155792569081 648. Brown enviromental changes :YP sucrose vs reference pool car-2(1) 839 bimodal -0.15 0.139337658700523 -0.0209006488050784 393. Rosetta 2000: Expression in cells with RHO1 under tet promoter(1) 512 induced -0.057 0.139229835698282 -0.00793610063480208 527. Brown enviromental changes :constant 0.32 mM H2O2 (50 min) redo(1) 725 induced 0.12 0.138960044809559 0.0166752053771471 YBR029C 1182 induced -0.013181 0.138808812546677 -0.00182963895817775 28. Young: Expression in srb4 mutant(1) 112 repressed 0 0.138211818521285 0 296. Rosetta 2000: Expression in vma8 deletion mutant (1) 415 induced -0.017 0.13818427931292 -0.00234913274831964 585. Brown enviromental changes :Nitrogen Depletion 2 h(1) 783 repressed 0.46 0.138130134428678 -0.0635398618371919 212. Rosetta 2000: Expression in npr2 deletion mutant (1) 331 repressed -0.176 0.137727315160568 0.02424000746826 7. Expression during the cell Cycle (cdc28)(10) 57 induced -0.66 0.137492531740105 -0.0907450709484693 BY4741 GAL t=60min vs. t=0 (YT00259) 997 induced 0 0.137230209111277 0 YDR047W 1039 induced 0.13125 0.137125186706497 0.0179976807552277 mec1_plus_gamma_90_min 954 repressed 0.033 0.136915141896938 -0.00451819968259895 YMR079W 1124 induced -0.060981 0.136405433159074 -0.00831813971947349 YAL038W 1010 induced 0.17999 0.136398898431665 0.0245504377287154 YHP1OE+ 1273 induced 0.112986 0.136350354742345 0.0154056811809186 496. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 694 repressed 0.07 0.136078696788648 -0.00952550877520536 565. Brown enviromental changes :1M sorbitol - 5 min(1) 763 induced -0.29 0.135849047796863 -0.0393962238610903 YFL024C 1052 induced -0.08014 0.135843913368185 -0.0108865312173263 27. Young: Expression in rpb1 mutant(1) 111 repressed 0 0.135818241224795 0 250. Rosetta 2000: Expression in rps27b (**11) deletion mutant (1) 369 repressed 1.04 0.135597460791636 -0.141021359223301 YPR169W 1178 induced 0.076962 0.135585324869305 0.0104349177725915 YNR035C 1138 induced -0.059231 0.135111557132188 -0.00800279264049663 sfp1::GALSFP1 t=40min GAL vs. t=0 RAFF (YT00268) 1004 repressed 0 0.134843166542196 0 535. Brown enviromental changes :1 mM Menadione (30 min) redo(1) 733 induced 0.12 0.134754014189694 0.0161704817027633 183. Rosetta 2000: Expression in hda1 deletion mutant (1) 302 induced 0.13 0.134741878267364 0.0175164441747573 493. Brown enviromental changes :Heat Shock 40 minutes hs-1(1) 691 induced 0 0.134425877520538 0 WT/sok2+ 1312 induced 0.042406 0.13423356982823 0.00569230876213592 gal4+gal 978 induced -0.113 0.134165888722928 -0.0151607454256909 252. Rosetta 2000: Expression in rtg1 deletion mutant (1) 371 induced 0.113 0.134159820761763 0.0151600597460792 TOS8OE+ 1269 induced 0.016205 0.134148151605676 0.00217387079676998 199. Rosetta 2000: Expression in kim4 deletion mutant (1) 318 induced -0.027 0.133582897684839 -0.00360673823749065 518. Brown enviromental changes :29C +1M sorbitol to 33C + 1M sorbitol - 15 minutes(1) 716 induced 0.14 0.133415795369679 0.0186782113517551 18. parental strain versus evolved strain 3(1) 102 bimodal -0.3 0.133276232262883 -0.0399828696788649 285. Rosetta 2000: Expression in swi6 (haploid) deletion mutant (1) 404 induced -0.083 0.133245892457058 -0.0110594090739358 514. Brown enviromental changes :29C to 33C - 15 minutes(1) 712 induced 0.08 0.132796863330844 0.0106237490664675 YLR101C 1103 induced 0.0014185 0.132773525018671 0.000188339245238985 497. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 695 repressed -0.07 0.132637696041822 0.00928463872292754 573. Brown enviromental changes :Hypo-osmotic shock - 15 min(1) 771 repressed 0.2 0.132484129947722 -0.0264968259895444 30. Young: Expression in med6 mutant(1) 114 repressed 0 0.132392643764003 0 RFX1OE+ 1253 induced 0.0452105 0.131798917102315 0.00595869494165421 YHR118C 1069 induced -0.044579 0.131725168035848 -0.00587217626587007 YPL010W 1166 induced 0.30476 0.131618745332338 0.0401121288274833 564. Brown enviromental changes :1.5 mM diamide (90 min)(1) 762 induced 0.31 0.131533327109783 0.0407753314040327 9. Sporulation: time course: t0,t0.5,t2,t5,t7,t9,t11.5(2) 80 induced 0 0.131522591486184 0 YLR086W 1102 induced 0.12674 0.131413834951456 0.0166553894417475 23. Fink: Expression in diploid tec1/tec1 deletion mutant(1) 107 repressed 0 0.131394697535474 0 YPR180W 1180 induced -0.0076677 0.131245799103809 -0.00100635341378828 389. Rosetta 2000: Expression in cells with HMG2 under tet promoter(1) 508 induced 0.16 0.131196321882002 0.0209914115011203 45. Expression in snf2 mutant cells in minimal medium(1) 135 bimodal 0.201 0.131032486930545 0.0263375298730395 10. Sporulation: Ectopic expression of Ndt80; deletion of Ndt80: early, mid,(3) 88 repressed 0.889 0.13095640403286 -0.116420243185213 YNL158W 1133 induced 0.060161 0.130954536967886 0.00787835589852499 YJL081C 1082 induced 0.19854 0.130751493651979 0.0259594015496639 485. Expression in response to peroxide: 10,20,40,60,120 min(2) 672 induced 0 0.130745892457058 0 MGA1OE+ 1245 induced -0.0673405 0.130662341299477 -0.00879886739427743 494. Brown enviromental changes :Heat Shock 60 minutes hs-1(1) 692 induced 0.14 0.13051997759522 0.0182727968633308 8. Expression during the cell cycle (cell size selection and release)(5) 69 repressed -0.07 0.130403752800597 0.00912826269604179 HAC1OE+ 1237 repressed 0.1774 0.130333271097834 -0.0231211222927558 500. Brown enviromental changes :Heat Shock 015 minutes hs-2(1) 698 induced 0 0.130242718446602 0 YDL055C 1033 induced 0.094432 0.13010502240478 0.0122860774757282 661. Brown enviromental changes :steady state 36 dec C ct-2(1) 852 induced 0.4 0.130097554144884 0.0520390216579536 YDR489W 1047 induced 0.1568 0.130040608663181 0.0203903674383868 ROX1OE+ 1256 induced 0.0206245 0.130014936519791 0.00268149305825243 wt_plus_gamma_20_min 938 induced -0.037 0.12974141150112 -0.00480043222554144 mec1_plus_gamma_5_min 948 induced 0.094 0.1296928678118 0.0121911295743092 613. Brown enviromental changes :YPD stationary phase 8 h ypd-1(1) 804 induced 0.28 0.129600914861837 0.0362882561613144 433. Expression in strain PH2 (ure2 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 590 induced 0.298 0.129354462285288 0.0385476297610158 MIG1OE+ 1246 induced 0.025892 0.12935212845407 0.00334918530993278 YNL272C 1136 induced 0.050941 0.129121079163555 0.00657755689367066 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(8) 547 induced 0.03 0.129041728902166 0.00387125186706498 477. Expression in response to trichostatin A (TSA): 15min,30min,60min,120min(3) 636 induced -0.151 0.129037994772218 -0.0194847372106049 552. Brown enviromental changes :dtt 030 min dtt-2(1) 750 repressed 0.16 0.128827016430172 -0.0206123226288275 634. Brown enviromental changes :MSN4 overexpression(1) 825 induced -0.1 0.128818614637789 -0.0128818614637789 482. Expression in response to acid: 10,20,40,60,80,100 min(2) 658 induced 0 0.128776605675878 0 588. Brown enviromental changes :Nitrogen Depletion 12 h(1) 786 induced 0.41 0.12876213592233 0.0527924757281553 143. Rosetta 2000: Expression in cup5 deletion mutant (1) 262 induced 0.017 0.128674850634802 0.00218747246079163 25. Fink: Expression in diploid ste7/ste7 deletion mutant(1) 109 repressed 0 0.128644510828977 0 YJL194W 1084 induced 0.25762 0.128574962658701 0.0331234818801346 MOT3OE+ 1247 induced 0.1114275 0.128216019417476 0.0142867905036408 631. Brown enviromental changes :DBYyap1- + 0.3 mM H2O2 (20 min)(1) 822 induced 0.11 0.128191280806572 0.0141010408887229 283. Rosetta 2000: Expression in swi4 deletion mutant (1) 402 induced 0.09 0.128089058999253 0.0115280153099328 WT/rox1+ 1307 induced -0.049244 0.128084391336819 -0.00630738776699032 YOR335C 1164 induced -0.13778 0.127891616878267 -0.0176209069734876 5. Expression during the cell cycle (alpha factor arrest and release)(3) 8 induced 0.04 0.127584951456311 0.00510339805825244 406. Rosetta 2000: Expression in response to Terbinafine(1) 525 induced -0.08 0.127483663181479 -0.0101986930545183 gal7-gal 990 bimodal -0.196 0.127455190440627 -0.0249812173263629 100. Young: Expression in spt20 deletion mutant(1) 206 repressed 0 0.127409447348768 0 DES459 (mec1-) + 0.02% MMS - 60 min 930 repressed 0.082 0.126933812546677 -0.0104085726288275 YGL122C 1192 induced 0.050296 0.126933345780433 0.00638423955937266 YJL091C 1083 induced -0.053023 0.126776045556385 -0.0067220462635362 268. Rosetta 2000: Expression in sir4 deletion mutant (1) 387 repressed 0.196 0.126681758775205 -0.0248296247199402 401. Rosetta 2000: Expression in response to HU(1) 520 induced -0.173 0.126640216579537 -0.0219087574682599 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(6) 94 induced 0.084 0.126568801344287 0.0106317793129201 37. Young: Expression in gcn5 mutant(1) 121 induced 0 0.126556665421957 0 YLR163C 1105 induced 0.11448 0.126476848394324 0.0144790696041822 478. Expression in haploid cells in response to rapamycin (100nM) for: 0min,15min,30min,60min,120min(4) 641 induced -1.37 0.126326549663928 -0.173067373039581 455. Expression in response to high MNNG (27 microgram/ml) for 60 min(1) 612 induced 0 0.126261202389843 0 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(4) 543 repressed 0.04 0.12601288274832 -0.0050405153099328 YOR204W 1155 induced 0.15437 0.125917195668409 0.0194378374953323 81. Expression in fus3 tec1 double deletion mutant cells treated with alpha-factor compared to wild-type untreated cells(1) 187 repressed -0.009 0.125907393577296 0.00113316654219566 654. Brown enviromental changes :steady state 15 dec C ct-2(1) 845 induced 0 0.125722554144884 0 442. Expression in strain PM38 (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 599 induced -0.165 0.125533513816281 -0.0207130297796864 DES459 (mec1-) + 0.02% MMS - 45 min 929 repressed 0.08 0.125350541448842 -0.0100280433159074 YFR037C 1190 induced 0.15451 0.125315533980583 0.0193625031553399 mec1_plus_gamma_20_min 950 repressed 0.345 0.1253071321882 -0.043230960604929 439. Expression in strain Jk9-3da (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 596 induced -0.228 0.125161967886482 -0.0285369286781179 474. Expression in hda1 deletion(1) 631 induced -0.125 0.124964525765497 -0.0156205657206871 428. Expression in strain PM38 (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 585 induced 0 0.124946788648245 0 36. Young: Expression in kin28 mutant(1) 120 repressed 0 0.124935119492158 0 485. Expression in response to peroxide: 10,20,40,60,120 min(5) 675 induced 0 0.124775952203137 0 26. Fink: Expression in diploid high copy TEC1(1) 110 repressed 0 0.124723207617625 0 YDL132W 1037 induced 0.049462 0.124518297236744 0.00615892401792383 487. Expression in response to sorbitol: 15 30 45 90 120 min(1) 681 induced 0 0.124377333831217 0 481. Expression in response to heat shock: 15,30,45,60,120 min(1) 652 induced 0 0.124314787154593 0 566. Brown enviromental changes :1M sorbitol - 15 min(1) 764 induced -0.29 0.124192961165049 -0.0360159587378642 YPL231W 1173 induced -0.012115 0.12412574682599 -0.00150378342279687 YOR232W 1157 induced 0.3768 0.12404359596714 0.0467396269604184 263. Rosetta 2000: Expression in she4 deletion mutant (1) 382 induced 0.12 0.12403426064227 0.0148841112770724 460. Expression of stationary phase cells in response to 0.1% MMS for 60 min(1) 617 repressed 0 0.124007654966393 0 YNL182C 1134 induced 0.16377 0.123778472740851 0.0202712004807692 338. Rosetta 2000: Expression in yhr022c deletion mutant (1) 457 induced 0.04 0.123374719940254 0.00493498879761016 sfp1D GLU vs. BY4741 GLU (YT00238) 999 repressed 0 0.123358849887976 0 sfp1::GALSFP1 t=0 RAFF vs. BY4741 t=0 RAF (YT00293) 1000 repressed 0 0.123150672143391 0 9. Sporulation: time course: t0,t0.5,t2,t5,t7,t9,t11.5(4) 82 repressed 0.136 0.123040515309933 -0.0167335100821509 YDL047W 1032 induced -0.029379 0.123004574309186 -0.00361375138862958 YPL243W 1174 induced 0.018641 0.123004107542943 0.002292919568708 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(1) 527 induced 0.01 0.122889749813294 0.00122889749813294 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(5) 93 induced 0.043 0.12287714712472 0.00528371732636296 536. Brown enviromental changes :1mM Menadione (40 min) redo(1) 734 induced 0.15 0.122801064227035 0.0184201596340553 55. Expression in response to overproduction of Ste11p(1) 160 repressed 0.023 0.122554611650485 -0.00281875606796116 8. Expression during the cell cycle (cell size selection and release)(7) 71 repressed 0.04 0.122356235997013 -0.00489424943988052 mec1_plus_gamma_10_min 949 induced -0.011 0.122335231516057 -0.00134568754667663 386. Rosetta 2000: Expression in cells with CDC42 under tet promoter(1) 505 induced -0.266 0.122186799850635 -0.0325016887602689 101. Young: Expression in spt3 deletion mutant(1) 207 repressed 0 0.121954817027633 0 454. Expression in response to tBuOOH (5mM) for 60 min(1) 611 induced 0 0.121901138909634 0 575. Brown enviromental changes :Hypo-osmotic shock - 45 min(1) 773 repressed -0.03 0.121808252427184 0.00365424757281552 293. Rosetta 2000: Expression in ubr2 deletion mutant (1) 412 repressed 0.11 0.121735436893204 -0.0133908980582524 642. Brown enviromental changes :YP ethanol vs reference pool car-2(1) 833 induced 0.33 0.121691560866318 0.0401582150858849 482. Expression in response to acid: 10,20,40,60,80,100 min(4) 660 induced 0 0.121558999253174 0 XBP1OE+ 1271 induced -0.0305265 0.121347554144884 -0.0037043161116038 DES459 (mec1-) + 0.02% MMS - 90 min 931 repressed 0.17 0.121275672143391 -0.0206168642643765 403. Rosetta 2000: Expression in response to Lovastatin(1) 522 induced 0.05 0.12120425690814 0.006060212845407 480. Expression in haploid cells deprived to amino acids in response to rapamycin for: 15min,30min,60min,90min,120min(1) 647 induced -1.123 0.121176717699776 -0.136081453976848 YMR001C 1121 induced -0.013749 0.121113237490665 -0.00166518590225915 555. Brown enviromental changes :dtt 240 min dtt-2(1) 753 induced 0.08 0.121070294996266 0.00968562359970128 627. Brown enviromental changes :DBYyap1 + 37degree heat (repeat)(1) 818 bimodal 0.15 0.120997946228529 0.0181496919342793 207. Rosetta 2000: Expression in med2 (haploid) deletion mutant (1) 326 repressed 0.066 0.120712752053771 -0.00796704163554889 264. Rosetta 2000: Expression in sin3 deletion mutant (1) 383 induced -0.923 0.12049430545183 -0.111216243932039 83. Expression in response to alpha-factor in fus3 tec1 double deletion mutant cells(1) 189 repressed -0.067 0.120467699775952 0.00807133588498878 472. Expression in sap3 deletion(1) 629 induced -1.103 0.120278192681105 -0.132666846527259 Low-Pi vs High-Pi in WT (DBY7286)(1) 579 induced 0.263 0.120204443614638 0.0316137686706498 YOR077W 1220 induced 0.10833 0.119894044062733 0.0129881217933159 175. Rosetta 2000: Expression in gal83 deletion mutant (1) 294 repressed -0.06 0.119850168035848 0.00719101008215088 502. Brown enviromental changes :Heat Shock 060 minutes hs-2(1) 700 repressed 0.14 0.119809559372666 -0.0167733383121732 485. Expression in response to peroxide: 10,20,40,60,120 min(1) 671 induced 0 0.119676064227035 0 479. Expression in diploid cells in response to rapamycin (100nM) for: 15min,30min,90min,120min(4) 646 repressed -1.396 0.119651325616131 0.167033250560119 202. Rosetta 2000: Expression in kss1 (haploid) deletion mutant (1) 321 repressed -0.043 0.119640123226288 0.00514452529873038 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(2) 528 repressed -0.09 0.119484690067214 0.0107536221060493 314. Rosetta 2000: Expression in yel044w deletion mutant (1) 433 induced 0.375 0.119412341299477 0.0447796279873039 wt-gal 973 induced 0.432 0.119292382374907 0.0515343091859598 195. Rosetta 2000: Expression in isw1 deletion mutant (1) 314 induced -0.319 0.119283513816281 -0.0380514409073936 BY4741 GAL t=90min vs. t=0 (YT00262) 998 repressed 0 0.119161221060493 0 151. Rosetta 2000: Expression in dot4 deletion mutant (1) 270 repressed 0.11 0.119156086631815 -0.0131071695294996 54. Expression in response to overproduction of Ste5p(1) 159 repressed 0.091 0.119146284540702 -0.0108423118932039 632. Brown enviromental changes :DBYyap1 + 0.32 mM H2O2 (20 min)(1) 823 induced 0.01 0.118858289768484 0.00118858289768484 YBR088C 1018 induced 0.32466 0.118831217326363 0.038579743017177 647. Brown enviromental changes :YP raffinose vs reference pool car-2(1) 838 induced -0.18 0.118768670649739 -0.021378360716953 482. Expression in response to acid: 10,20,40,60,80,100 min(1) 657 induced 0 0.118768203883495 0 gal5-gal 988 induced 0.063 0.118762602688574 0.00748204396938016 432. Expression in strain MS221 in response to 30 min 50 nM treatment with rapamycin in YPD(1) 589 induced -0.044 0.118750933532487 -0.00522504107542943 YLR229C 1211 induced 0.10022 0.118734129947722 0.0118995345033607 478. Expression in haploid cells in response to rapamycin (100nM) for: 0min,15min,30min,60min,120min(2) 639 induced 0 0.118574029126214 0 458. Expression of S arrested cells (with hydroxyurea) in response to 0.1% MMS for 60 min(1) 615 repressed 0 0.118569361463779 0 YNL150W 1132 induced -0.033748 0.118333644510829 -0.00399352383495146 354. Rosetta 2000: Expression in ymr025w deletion mutant (1) 473 repressed 0.093 0.118286967886482 -0.0110006880134428 102. Young: Expression in taf25_2 deletion mutant(1) 208 repressed 0 0.118165141896938 0 682. Expression in response to 0.4M NaCl for 10 min in hog1 mutant(1) 870 induced 0 0.118055451829724 0 194. Rosetta 2000: Expression in imp2 (**12) deletion mutant (1) 313 induced 0.03 0.117982636295743 0.00353947908887229 485. Expression in response to peroxide: 10,20,40,60,120 min(4) 674 bimodal 0 0.117878080657207 0 245. Rosetta 2000: Expression in rpl34a (**9) deletion mutant (1) 364 repressed 0.073 0.117830937266617 -0.00860165842046304 223. Rosetta 2000: Expression in pet127 deletion mutant (1) 342 induced -0.08 0.117628360716953 -0.00941026885735624 582. Brown enviromental changes :aa starv 6 h(1) 780 induced 0.08 0.117544809559373 0.00940358476474984 487. Expression in response to sorbitol: 15 30 45 90 120 min(2) 682 induced 0 0.117438853622106 0 YLR440C 1115 induced -0.042568 0.11737070575056 -0.00499623620238984 123. Rosetta 2000: Expression in bim1 (**15) deletion mutant (1) 242 induced 0.09 0.11725354742345 0.0105528192681105 485. Expression in response to peroxide: 10,20,40,60,120 min(3) 673 induced 0 0.117085978342046 0 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(4) 125 induced 0 0.11704070201643 0 578. Brown enviromental changes :aa starv 0.5 h(1) 776 induced 0.51 0.11686146377894 0.0595993465272594 130. Rosetta 2000: Expression in cat8 deletion mutant (1) 249 induced -0.066 0.116737303958178 -0.00770466206123975 521. Brown enviromental changes :29C +1M sorbitol to 33C + *NO sorbitol - 15 minutes(1) 719 induced 0.18 0.116713965646004 0.0210085138162807 82. Expression in response to alpha-factor in fus3 deletion mutant cells(1) 188 repressed 0.005 0.116573002240478 -0.00058286501120239 556. Brown enviromental changes :dtt 480 min dtt-2(1) 754 induced 0.26 0.116554331590739 0.0303041262135921 6. Expression during the cell cycle (cdc15 arrest and release)(2) 25 repressed 0.48 0.116286874533234 -0.0558176997759523 289. Rosetta 2000: Expression in top3 (haploid) deletion mutant (1) 408 bimodal 0.036 0.116166915608663 0.00418200896191187 537. Brown enviromental changes :1 mM Menadione (50 min)redo(1) 735 induced 0.16 0.116110903659447 0.0185777445855115 gal6-gal 989 induced 0.03 0.115954536967886 0.00347863610903658 641. Brown enviromental changes :sucrose car-1(1) 832 repressed 0.24 0.115917662434653 -0.0278202389843167 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(3) 215 induced 0 0.11590786034354 0 BY4741 GAL t=30min vs. t=0 (YT00261) 996 repressed 0 0.115807038834951 0 DES460 (wt) - mock irradiation - 5 min 944 induced -0.259 0.115782300224048 -0.0299876157580284 SFP1OE+ 1258 repressed -0.065574 0.115590459297984 0.007579728778006 YLR359W 1112 induced -0.035138 0.115512976101568 -0.0040588949542569 587. Brown enviromental changes :Nitrogen Depletion 8 h(1) 785 bimodal 0.12 0.115505974607916 0.0138607169529499 342. Rosetta 2000: Expression in yil037c (haploid) deletion mutant (1) 461 induced -0.123 0.115318334578043 -0.0141841551530993 567. Brown enviromental changes :1M sorbitol - 30 min(1) 765 induced 0 0.115146097834205 0 633. Brown enviromental changes :MSN2 overexpression (repeat)(1) 824 induced -0.14 0.115055545182972 -0.0161077763256161 YBR143C 1020 induced 0.081926 0.114997199402539 0.00942126055825241 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(1) 540 bimodal 0.24 0.114948655713219 0.0275876773711726 79. Expression in fus3 deletion mutant cells(1) 185 induced 0.037 0.114811893203883 0.00424804004854367 173. Rosetta 2000: Expression in fus3 (haploid) deletion mutant (1) 292 induced 0.123 0.114811893203883 0.0141218628640776 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(3) 542 repressed 0.03 0.11456497386109 -0.0034369492158327 586. Brown enviromental changes :Nitrogen Depletion 4 h(1) 784 repressed 0.45 0.114511295743092 -0.0515300830843914 60. Expression in response to alpha-factor in ste20 deletion mutant cells(1) 165 repressed -0.008 0.114498226288275 0.0009159858103062 429. Expression in strain YHE711 (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 586 induced -1.07 0.114073002240478 -0.122058112397311 623. Brown enviromental changes :DBY7286 37degree heat - 20 min(1) 814 induced 0.04 0.114065067214339 0.00456260268857356 YDL031W 1031 induced 0.24389 0.114052464525765 0.0278162555731888 611. Brown enviromental changes :YPD stationary phase 2 h ypd-1(1) 802 induced 0.25 0.113954443614638 0.0284886109036595 486. Expression in response to NaCl: 15 30 45 60 120 min(2) 677 induced 0 0.11390216579537 0 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(4) 92 induced -0.269 0.113898431665422 -0.0306386781179985 482. Expression in response to acid: 10,20,40,60,80,100 min(3) 659 induced 0 0.11386855862584 0 470. Expression in hda1 deletion(1) 627 induced 0.023 0.113812546676624 0.00261768857356235 YKL052C 1089 induced 0.19111 0.113810212845407 0.0217502697768857 134. Rosetta 2000: Expression in cka2 deletion mutant (1) 253 induced -0.053 0.113805545182972 -0.00603169389469752 169. Rosetta 2000: Expression in fks1 (haploid) deletion mutant (1) 288 induced -0.189 0.113779873039582 -0.021504396004481 676. Expression in gcr1 mutant YPGL versus GCR1 YPGL(1) 864 repressed -0.614 0.113757001493652 0.0698467989171023 483. Expression in response to alkali: 10,20,40,60,80,100 min(6) 668 induced 0 0.113612303958178 0 473. Expression in ume6 deletion(1) 630 induced 0.176 0.113595500373413 0.0199928080657207 651. Brown enviromental changes :25 deg growth ct-1(1) 842 repressed -0.15 0.113583364451083 0.0170375046676624 628. Brown enviromental changes :DBY7286 + 0.3 mM H2O2 (20 min)(1) 819 induced -0.12 0.113582897684839 -0.0136299477221807 4. Cell Cycle: Expression in response to Clb2p (set 2, 30 min)(1) 5 induced 0.3 0.113492345033607 0.0340477035100821 477. Expression in response to trichostatin A (TSA): 15min,30min,60min,120min(4) 637 induced -0.503 0.113433999253174 -0.0570573016243465 8. Expression during the cell cycle (cell size selection and release)(6) 70 repressed -0.09 0.113319174757282 0.0101987257281554 YMR235C 1212 induced 0.29934 0.113198282300224 0.033884773823749 540. Brown enviromental changes :1 mM Menadione (120 min)redo(1) 738 induced 0.3 0.113150672143391 0.0339452016430173 dun1- + 0.02% MMS - 90 min 934 repressed 0.117 0.113052651232263 -0.0132271601941748 14. Galactose-induced expression in med2-deleted cells(1) 98 repressed 0.322 0.113019510828977 -0.0363922824869306 YLR378C 1113 induced -0.059442 0.11287714712472 -0.00670964337938761 451. Expression in response to BCNU (200 micromolar) for 60 min(1) 608 induced 0 0.112735250186706 0 166. Rosetta 2000: Expression in erp2 deletion mutant (1) 285 repressed 0.106 0.112655433159074 -0.0119414759148618 216. Rosetta 2000: Expression in pac2 deletion mutant (1) 335 induced -0.013 0.112640496639283 -0.00146432645631068 YNR053C 1140 induced 0.18983 0.112627893950709 0.0213801531086631 YPL075W 1221 induced -0.048861 0.112616691560866 -0.00550256416635547 524. Brown enviromental changes :constant 0.32 mM H2O2 (20 min) redo(1) 722 induced 0.5 0.112316094100075 0.0561580470500375 dun1- + 0.02% MMS - 120 min 935 repressed 0.102 0.112304424943988 -0.0114550513442868 482. Expression in response to acid: 10,20,40,60,80,100 min(5) 661 induced 0 0.112232542942494 0 gal1+gal 975 repressed -0.239 0.112210604929052 0.0268183345780434 121. Rosetta 2000: Expression in ase1 (**12) deletion mutant (1) 240 repressed 0.322 0.112162061239731 -0.0361161837191934 YGL073W 1191 induced 0.21168 0.112079910380881 0.0237250754294249 519. Brown enviromental changes :29C +1M sorbitol to 33C + 1M sorbitol - 30 minutes(1) 717 repressed -0.1 0.11198142270351 0.011198142270351 646. Brown enviromental changes :YP mannose vs reference pool car-2(1) 837 repressed -0.32 0.111747106049291 0.0357590739357731 35. Young: Expression in tfa1 mutant(1) 119 repressed 0 0.111745238984317 0 9. Sporulation: time course: t0,t0.5,t2,t5,t7,t9,t11.5(6) 84 repressed 0.434 0.111715365944735 -0.048484468820015 507. Brown enviromental changes :37C to 25C shock - 90 min(1) 705 induced -0.12 0.111610343539955 -0.0133932412247946 YHR205W 1201 induced 0.055208 0.111540328603435 0.00615791846153844 MHY1 (dun1) + heat 20 min 962 induced 0.143 0.111529126213592 0.0159486650485437 480. Expression in haploid cells deprived to amino acids in response to rapamycin for: 15min,30min,60min,90min,120min(3) 649 repressed 1.175 0.111483383121733 -0.130992975168036 94. Expression in response to 1ug/mL FK506(1) 200 induced -0.193 0.111303678117999 -0.0214816098767738 241. Rosetta 2000: Expression in rpd3 (haploid) deletion mutant (1) 360 induced -1.053 0.111282206870799 -0.117180163834951 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(7) 546 induced -0.39 0.111094100074683 -0.0433266990291264 YBR142W 1019 induced 0.18371 0.111022684839432 0.0203959774318521 YCR042C 1029 induced 0.23971 0.110945201643017 0.0265946742858476 551. Brown enviromental changes :dtt 015 min dtt-2(1) 749 repressed 0.07 0.110904592979836 -0.00776332150858852 201. Rosetta 2000: Expression in kre1 deletion mutant (1) 320 induced -0.149 0.110821508588499 -0.0165124047796864 465. Expression in rpd3 deletion(1) 622 induced -2.837 0.110798637042569 -0.314335733289768 YBR243C 1026 induced -0.080534 0.110793969380134 -0.00892268153005971 576. Brown enviromental changes :Hypo-osmotic shock - 60 min(1) 774 repressed 0.01 0.110713685586258 -0.00110713685586258 Addition of 1M NaCl (10) 915 induced -2.08 0.110593259895444 -0.230033980582524 YPR178W 1179 induced 0.12709 0.110543782673637 0.0140490093399925 gal80-gal 992 repressed -0.03 0.110338405526512 0.00331015216579536 YER172C 1050 induced 0.10278 0.110292195668409 0.0113358318707991 YBL084C 1015 induced 0.14685 0.110287994772218 0.0161957920323002 612. Brown enviromental changes :YPD stationary phase 4 h ypd-1(1) 803 induced 0.1 0.110143297236744 0.0110143297236744 YKR086W 1095 induced 0.061086 0.110075616131441 0.00672407908700521 6. Expression during the cell cycle (cdc15 arrest and release)(1) 24 repressed 0.13 0.109996732636296 -0.0142995752427185 GIS1OE+ 1234 induced 0.0512655 0.109995799103809 0.00563898963895632 336. Rosetta 2000: Expression in yhl045w deletion mutant (1) 455 induced -0.1 0.109826362957431 -0.0109826362957431 477. Expression in response to trichostatin A (TSA): 15min,30min,60min,120min(2) 635 induced -0.203 0.109784820761763 -0.0222863186146379 YLL003W 1096 induced 0.14536 0.109772218073189 0.0159564896191188 459. Expression of G2 arrested cells (alpha nocodazole) in response to 0.1% MMS for 60 min(1) 616 repressed 0 0.109691934279313 0 sfp1::GALSFP1 t=20min GAL vs. t=0 RAFF (YT00234) 1002 repressed 0 0.109665328603435 0 wt_plus_gamma_60_min 941 repressed -0.055 0.109627520537715 0.00602951362957433 46. Expression in swi1 mutant cells in YPD(1) 136 induced -0.138 0.109565440627334 -0.0151200308065721 88. Expression in response to DNA damage by MMS(1) 194 repressed 0 0.109553304705004 0 5. Expression during the cell cycle (alpha factor arrest and release)(16) 21 repressed -0.09 0.109397404779686 0.00984576643017174 YNL258C 1216 induced 0.10629 0.109390403286034 0.0116271059652726 wt_plus_gamma_30_min 939 induced 0.007 0.109312453323376 0.000765187173263632 468. Expression in sin33 deletion(1) 625 repressed -2.191 0.109275578790142 0.239422793129201 254. Rosetta 2000: Expression in rvs161 (haploid) deletion mutant (1) 373 induced -0.259 0.108960978342046 -0.0282208933905899 475. Expression in hos2 deletion(1) 632 induced -0.456 0.108931572068708 -0.0496727968633308 548. Brown enviromental changes :2.5mM DTT 120 min dtt-1(1) 746 induced 0.16 0.108848487677371 0.0174157580283794 8. Expression during the cell cycle (cell size selection and release)(2) 66 induced 0.04 0.108645444361464 0.00434581777445856 YMR200W 1126 induced 0.034059 0.108568427931292 0.00369773208691187 gal4gal80-gal 995 repressed 0.482 0.108566094100075 -0.0523288573562362 242. Rosetta 2000: Expression in rpl12a deletion mutant (1) 361 repressed 0.299 0.108565160567588 -0.0324609830097088 66. Expression in ste5 deletion mutant cells(1) 171 induced 0.013 0.10850354742345 0.00141054611650485 281. Rosetta 2000: Expression in ste5 (haploid) deletion mutant (1) 400 induced 0.043 0.10850354742345 0.00466565253920835 590. Brown enviromental changes :Nitrogen Depletion 2 d(1) 788 induced 0.43 0.108408793876027 0.0466157813666916 68. Expression in ste11 deletion mutant cells(1) 173 induced 0.024 0.108313106796117 0.00259951456310681 274. Rosetta 2000: Expression in ste11 (haploid) deletion mutant (1) 393 induced 0.08 0.108313106796117 0.00866504854368936 237. Rosetta 2000: Expression in rip1 deletion mutant (1) 356 bimodal 0.007 0.108226288274832 0.000757584017923824 WT/rgm1+ 1305 repressed -0.038251 0.108131067961165 0.00413612148058252 592. Brown enviromental changes :Nitrogen Depletion 5 d(1) 790 induced 0.49 0.108012042569081 0.0529259008588497 397. Rosetta 2000: Expression in response to Cycloheximide white(1) 516 repressed 0.096 0.107931758775205 -0.0103614488424197 205. Rosetta 2000: Expression in mak10 deletion mutant (1) 324 induced -0.007 0.107884148618372 -0.000755189040328604 554. Brown enviromental changes :dtt 120 min dtt-2(1) 752 induced -0.14 0.107799197162061 -0.0150918876026885 DES460 + 0.02% MMS - 90 min 924 induced 0.228 0.107349234503361 0.0244756254667663 149. Rosetta 2000: Expression in dig1, dig2 (haploid) deletion mutant (1) 268 bimodal -0.126 0.107293222554145 -0.0135189460418223 639. Brown enviromental changes :mannose car-1(1) 830 repressed 0.24 0.107263349514563 -0.0257432038834951 504. Brown enviromental changes :37C to 25C shock - 30 min(1) 702 repressed -0.09 0.107164861837192 0.00964483756534728 34. Young: Expression in taf17 mutant(1) 118 repressed 0 0.106924010455564 0 467. Expression in sin3 deletion(1) 624 induced -1.761 0.106821321882002 -0.188112347834206 539. Brown enviromental changes :1 mM Menadione (105 min) redo(1) 737 induced 0.16 0.106809185959671 0.0170894697535474 515. Brown enviromental changes :29C to 33C - 30 minutes(1) 713 repressed 0.14 0.106790982076176 -0.0149507374906646 DES459 (mec1) + heat 20 min 961 induced 0.046 0.106772311426438 0.00491152632561615 221. Rosetta 2000: Expression in pet111 deletion mutant (1) 340 induced -0.02 0.106771377893951 -0.00213542755787902 231. Rosetta 2000: Expression in rad57 deletion mutant (1) 350 induced 0.06 0.106584204630321 0.00639505227781926 400. Rosetta 2000: Expression in response to Glucosamine(1) 519 induced -0.05 0.106405899925317 -0.00532029499626585 YOR261C 1160 induced 0.19224 0.106373226288275 0.020449189021658 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(11) 537 bimodal 0.1 0.106249533233757 0.0106249533233757 626. Brown enviromental changes :DBYyap1- 37degree heat - 20 min (redo)(1) 817 induced 0.23 0.106229462285288 0.0244327763256162 WT/hac1+ 1291 repressed -0.0849195 0.106011015683346 0.0090024024463219 71. Expression in bni1 deletion mutant cells(1) 176 induced -0.026 0.105987677371173 -0.0027556796116505 8. Expression during the cell cycle (cell size selection and release)(9) 73 induced 0.09 0.105981142643764 0.00953830283793876 353. Rosetta 2000: Expression in ymr014w deletion mutant (1) 472 repressed 0.253 0.105963872292756 -0.0268088596900673 YNL245C 1215 induced 0.26607 0.105807505601195 0.02815220301531 650. Brown enviromental changes :21 deg growth ct-1(1) 841 repressed -0.1 0.105749159820762 0.0105749159820762 103. Young: Expression in taf60 deletion mutant(1) 209 induced 0 0.105728622106049 0 Low-Pi vs High-Pi in WT (NBW7) exp1(1) 577 induced -0.218 0.105728155339806 -0.0230487378640777 63. Expression in response to alpha-factor in fus3 loss-of-function mutant cells(1) 168 induced -0.016 0.105538181478715 -0.00168861090365944 YIR022W 1076 induced 0.080891 0.105441094100075 0.00852923554284917 129. Rosetta 2000: Expression in bul1 deletion mutant (1) 248 induced -0.219 0.105287528005975 -0.0230579686333085 49. Expression in response to 50 nM alpha-factor: 0,15,30,45,60,90,120 min(7) 152 induced -0.059 0.105197908887229 -0.00620667662434651 591. Brown enviromental changes :Nitrogen Depletion 3 d(1) 789 induced 0.58 0.105193707991038 0.061012350634802 574. Brown enviromental changes :Hypo-osmotic shock - 30 min(1) 772 repressed 0.03 0.105046676624347 -0.00315140029873041 62. Expression in response to osmotic shock in hog1 deletion mutant cells(1) 167 induced -0.127 0.104914581777446 -0.0133241518857356 302. Rosetta 2000: Expression in yap1 deletion mutant (1) 421 bimodal -0.007 0.104885642270351 -0.000734199495892457 80. Expression in fus3 tec1 double deletion mutant cells(1) 186 repressed -0.077 0.104806758775205 0.00807012042569078 (Rich Media 2% Glucose YPD-185009) kss1 5mM aF, 30 min. 883 induced 0.03 0.104793222554145 0.00314379667662435 96. Heat-shock induced expression in med2 deleted cells(1) 202 repressed -0.043 0.104771751306945 0.00450518530619863 8. Expression during the cell cycle (cell size selection and release)(14) 78 induced 0.21 0.104637322628827 0.0219738377520537 95. Expression in response to 50ug/mL FK506(1) 201 induced -0.315 0.104618651979089 -0.032954875373413 YBR196C 1024 induced -0.17879 0.104351194921583 -0.0186569501400298 YGR048W 1057 induced 0.10041 0.104293782673637 0.0104721387182599 220. Rosetta 2000: Expression in pep12 deletion mutant (1) 339 induced -0.023 0.104255041075429 -0.00239786594473487 mec1_plus_gamma_120_min 955 repressed -0.25 0.104192494398805 0.0260481235997013 572. Brown enviromental changes :Hypo-osmotic shock - 5 min(1) 770 induced 0.08 0.104167289021658 0.00833338312173264 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(7) 128 induced 0 0.104071135175504 0 463. Expression in response to 0.1% MMS for 60 min(1) 620 repressed 0 0.104041262135922 0 668. Expression in Rho0 containing rtg2 deletion vs Rho0(1) 856 induced 0 0.103953510082151 0 Low-Pi vs High-Pi in WT (NBW7) exp2(1) 578 induced -0.029 0.103913368185213 -0.00301348767737118 182. Rosetta 2000: Expression in hat2 deletion mutant (1) 301 induced -0.017 0.103744865571322 -0.00176366271471247 76. Expression in tec1 deletion mutant cells treated with alpha-factor compared to wild-type cells treated with alpha-factor: 30,120 min(2) 182 repressed 0.024 0.103680918595967 -0.00248834204630321 341. Rosetta 2000: Expression in yhr039c deletion mutant (1) 460 induced 0.073 0.10360997012696 0.00756352781926808 DES459 (mec1-) + 0.02% MMS - 15 min 927 repressed -0.055 0.103602968633308 0.00569816327483194 589. Brown enviromental changes :Nitrogen Depletion 1 d(1) 787 induced 0.46 0.103580563853622 0.0476470593726661 YOR236W 1158 induced 0.040316 0.103462471994025 0.00417119302091111 188. Rosetta 2000: Expression in hmg1(haploid) deletion mutant (1) 307 bimodal -0.106 0.103436799850635 -0.0109643007841673 549. Brown enviromental changes :2.5mM DTT 180 min dtt-1(1) 747 induced 0.56 0.103197348767737 0.0577905153099327 277. Rosetta 2000: Expression in ste2 (haploid) deletion mutant (1) 396 induced -0.299 0.103156740104556 -0.0308438652912622 ADR1OE+ 1224 induced -0.005996 0.103110530246453 -0.000618250739357732 DES459 (mec1) - mock irradiation - 5 min 956 induced 0.158 0.10304284914115 0.0162807701643017 YPR015COE+ 1275 bimodal 0.121249 0.102859876773712 0.0124716571989358 YKL033W 1204 induced 0.022949 0.102841206123973 0.00236010283933906 DES460 + 0.02% MMS - 5 min 919 induced 0.126 0.102836071695295 0.0129573450336072 pho80 vs WT(1) 581 induced -0.201 0.102740851381628 -0.0206509111277072 105. Young: Expression in taf90 deletion mutant(1) 211 bimodal 0 0.10270070948469 0 YHR090C 1068 induced -0.42637 0.102680638536221 -0.0437799438526886 477. Expression in response to trichostatin A (TSA): 15min,30min,60min,120min(1) 634 induced -0.128 0.102642363704257 -0.0131382225541449 5. Expression during the cell cycle (alpha factor arrest and release)(2) 7 induced -0.08 0.102476194921583 -0.00819809559372664 YLR291C 1109 induced 0.17795 0.102309559372666 0.0182059860903659 57. Expression in response to alpha-factor in far1 deletion mutant cells(1) 162 repressed -0.031 0.102163928304705 0.00316708177744586 WT/cat8+ 1280 repressed -0.0232885 0.10195715085885 0.00237442910777633 269. Rosetta 2000: Expression in sod1 (haploid) deletion mutant (1) 388 induced 0.036 0.10176857729649 0.00366366878267364 YMR076C 1123 induced 0.13423 0.101761109036594 0.013659393665982 154. Rosetta 2000: Expression in ecm10 deletion mutant (1) 273 induced -0.086 0.10165141896938 -0.00874202203136668 681. Expression in response to 0.4M NaCl for 10 min in wild type(1) 869 induced 0 0.101645351008215 0 YFL005W 1051 induced 0.037462 0.101634615384615 0.00380743596153845 538. Brown enviromental changes :1 mM Menadione (80 min) redo(1) 736 induced 0.19 0.101504854368932 0.0192859223300971 67. Expression in ste7 deletion mutant cells(1) 172 repressed 0.083 0.101494118745332 -0.00842401185586256 378. Rosetta 2000: Expression in yor021c deletion mutant (1) 497 induced -0.046 0.101489917849141 -0.00466853622106049 405. Rosetta 2000: Expression in response to Nikkomycin Z(1) 524 induced -0.003 0.101432505601195 -0.000304297516803585 WT/cst6+ 1282 induced -0.015236 0.101423637042569 -0.00154529053398058 359. Rosetta 2000: Expression in ymr034c deletion mutant (1) 478 repressed 0.14 0.101348487677371 -0.0141887882748319 YBL040C 1014 induced -0.16504 0.101312079910381 -0.0167205456684093 391. Rosetta 2000: Expression in cells with KAR2 under tet promoter(1) 510 induced -0.023 0.101264002987304 -0.00232907206870799 150. Rosetta 2000: Expression in dig2 deletion mutant (1) 269 induced 0.043 0.101193988050784 0.00435134148618371 513. Brown enviromental changes :29C to 33C - 5 minutes(1) 711 induced 0.14 0.101168782673637 0.0141636295743092 99. Church: mating type a glucose 30 C vs. mating type a glactose 30 C FOLLOWED BY 30 C HEAT SHOCK(1) 205 induced 0 0.101065627333831 0 495. Brown enviromental changes :Heat Shock 80 minutes hs-1(1) 693 induced 0.51 0.100994678864824 0.0515072862210602 358. Rosetta 2000: Expression in ymr031w-a deletion mutant (1) 477 repressed 0.116 0.100994212098581 -0.0117153286034354 YNL222W 1214 induced 0.13526 0.100933999253174 0.0136523327389843 gal6+gal 980 induced 0.007 0.100773431665422 0.000705414021657954 13. Expression in cells overexpressing Yap1p(1) 97 induced -0.168 0.100706217326363 -0.016918644510829 229. Rosetta 2000: Expression in qcr2 (haploid) deletion mutant (1) 348 induced -0.106 0.100606796116505 -0.0106643203883495 387. Rosetta 2000: Expression in cells with ERG11 under tet promoter(1) 506 induced -0.01 0.100583457804332 -0.00100583457804332 579. Brown enviromental changes :aa starv 1 h(1) 777 bimodal 0.04 0.100571321882001 0.00402285287528004 MSN2OE+ 1248 induced -0.0561145 0.100526512322629 -0.00564099497572816 YLR008C 1208 induced 0.1962 0.100467233009709 0.0197116711165049 329. Rosetta 2000: Expression in yer083c deletion mutant (1) 448 induced 0.13 0.100463032113518 0.0130601941747573 506. Brown enviromental changes :37C to 25C shock - 60 min(1) 704 induced -0.51 0.100288928304705 -0.0511473534353995 260. Rosetta 2000: Expression in scs7 deletion mutant (1) 379 induced -0.01 0.100230115758028 -0.00100230115758028 483. Expression in response to alkali: 10,20,40,60,80,100 min(5) 667 induced 0 0.100210044809559 0 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(1) 213 induced 0 0.0996135175504108 0 24. Fink: Expression in diploid ste12/ste12 deletion mutant(1) 108 bimodal 0 0.0996004480955937 0 DES460 + 0.02% MMS - 5 min 966 induced -0.191 0.099523431665422 -0.0190089754480956 YNL149C 1213 induced -0.01534 0.099523431665422 -0.00152668944174757 32. Young: Expression in swi2 mutant(1) 116 repressed 0 0.09951643017177 0 164. Rosetta 2000: Expression in erg5 deletion mutant (1) 283 repressed -0.02 0.099468353248693 0.00198936706497386 YGR280C 1064 induced 0.13546 0.0994604182225542 0.0134729082524272 gal1-gal 984 induced -0.571 0.0994389469753547 -0.0567796387229275 127. Rosetta 2000: Expression in bub3 (**2,8,13) deletion mutant (1) 246 induced -0.136 0.0994034727408514 -0.0135188722927558 97. Church: mating type a GLUCOSE 30 C vs. mating type a GALACTOSE 30 C(1) 203 repressed 0 0.099401138909634 0 STP2OE+ 1265 induced 0.0103225 0.0993488610903659 0.0010255286186053 362. Rosetta 2000: Expression in ymr044w deletion mutant (1) 481 repressed 0.033 0.0993231889469754 -0.00327766523525019 YMR239C 1128 induced 0.13842 0.0992289021657954 0.0137352646377894 482. Expression in response to acid: 10,20,40,60,80,100 min(6) 662 induced 0 0.0990375280059746 0 59. Expression in sst2 deletion mutant cells(1) 164 induced 0.071 0.0989889843166542 0.00702821788648245 272. Rosetta 2000: Expression in sst2 (haploid) deletion mutant (1) 391 induced 0.236 0.0989889843166542 0.0233614002987304 240. Rosetta 2000: Expression in rnr1 (haploid **9) deletion mutant (1) 359 induced -0.027 0.0989297050037341 -0.00267110203510082 8. Expression during the cell cycle (cell size selection and release)(11) 75 repressed 0.23 0.0988988984316654 -0.022746746639283 DES460 + 0.02% MMS - 120 min 925 induced 0.199 0.0985819641523525 0.0196178108663181 124. Rosetta 2000: Expression in bni1 (haploid) deletion mutant (1) 243 induced -0.086 0.0985656273338312 -0.00847664395070948 77. Expression in tec1 deletion mutant cells(1) 183 induced 0.017 0.0985385548917102 0.00167515543315907 379. Rosetta 2000: Expression in yor051c (**14) deletion mutant (1) 498 repressed 0.057 0.0984704070201643 -0.00561281320014937 176. Rosetta 2000: Expression in gas1 deletion mutant (1) 295 induced 0.126 0.098448002240478 0.0124044482823002 159. Rosetta 2000: Expression in eft2 deletion mutant (1) 278 repressed -0.003 0.0984041262135922 0.000295212378640777 YDR412W 1186 induced 0.091747 0.0982001493651979 0.00900956910380881 YLR457C 1116 induced -0.044691 0.0981474047796863 -0.00438630566700896 486. Expression in response to NaCl: 15 30 45 60 120 min(3) 678 induced 0 0.0981044622852875 0 332. Rosetta 2000: Expression in cells with CMD1 under tet promoter(1) 451 induced 0.239 0.0980815907393577 0.0234415001867065 478. Expression in haploid cells in response to rapamycin (100nM) for: 0min,15min,30min,60min,120min(3) 640 induced -3.057 0.098004574309186 -0.299599983663182 YLR106C 1209 induced 0.052145 0.0979550970873786 0.00510786853762136 213. Rosetta 2000: Expression in nrf1 deletion mutant (1) 332 induced -0.063 0.0979219566840926 -0.00616908327109783 113. Rosetta 2000: Expression in ald5 deletion mutant (1) 232 repressed -0.09 0.0979158887229276 0.00881242998506348 7. Expression during the cell Cycle (cdc28)(2) 49 repressed 0.57 0.097890216579537 -0.0557974234503361 17. parental strain versus evolved strain 2(1) 101 induced -0.67 0.0978272031366692 -0.0655442261015684 440. Expression in strain TS19-4c in response to 30 min 50 nM treatment with rapamycin in YPD(1) 597 induced 0 0.097816000746826 0 YML046W 1119 induced 0.1236 0.0976839058999253 0.0120737307692308 5. Expression during the cell cycle (alpha factor arrest and release)(15) 20 induced -0.11 0.0975536781179985 -0.0107309045929798 324. Rosetta 2000: Expression in yer044c (haploid) deletion mutant (1) 443 induced 0.183 0.0974892643764003 0.0178405353808813 449. Expression in response to 0.1% MMS for 60 min(1) 606 repressed 0 0.0974019790888723 0 HSF1OE+ 1240 repressed 0.030938 0.0973627707244212 -0.00301220940067214 INO2OE+ 1241 repressed NaN 0.097265216579537 0 Young: Expression during histone H4 depletion: 0h,0.5h,1h,1.5h,2h,4h,6h(3) 124 induced 0 0.0972302091112771 0 wt+gal 974 repressed -0.166 0.097136855862584 0.0161247180731889 YER006W 1188 induced 0.2117 0.0971256534727409 0.0205615008401792 YDL060W 1034 induced 0.26099 0.0970738424197162 0.0253353021331217 637. Brown enviromental changes :galactose car-1(1) 828 induced -0.36 0.0970612397311426 -0.0349420463032113 344. Rosetta 2000: Expression in yjl107c (haploid) deletion mutant (1) 463 repressed 0.09 0.0969935586258402 -0.00872942027632562 6. Expression during the cell cycle (cdc15 arrest and release)(5) 28 induced -0.04 0.096935212845407 -0.00387740851381628 170. Rosetta 2000: Expression in fpr1 deletion mutant (1) 289 induced -0.003 0.096908140403286 -0.000290724421209858 117. Rosetta 2000: Expression in ard1 deletion mutant (1) 236 repressed -0.093 0.0967765123226288 0.00900021564600448 7. Expression during the cell Cycle (cdc28)(5) 52 induced -0.43 0.0966854929051531 -0.0415747619492158 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(7) 533 induced 0.13 0.0966640216579537 0.012566322815534 16. parental strain versus evolved strain 1(1) 100 repressed -0.34 0.0965832710978342 0.0328383121732636 YMR043W 1122 induced 0.065904 0.0965477968633308 0.00636288600448095 395. Rosetta 2000: Expression in response to 2-deoxy-D-glucose(1) 514 induced 0.017 0.0965384615384615 0.00164115384615385 SPS18OE+ 1262 induced -0.0754125 0.0965090552651232 -0.0072779891301811 HAP4OE+ 1238 repressed 0.125218 0.0963340179238237 -0.0120627530563854 483. Expression in response to alkali: 10,20,40,60,80,100 min(1) 663 induced 0 0.096182785660941 0 76. Expression in tec1 deletion mutant cells treated with alpha-factor compared to wild-type cells treated with alpha-factor: 30,120 min(1) 181 induced -0.041 0.0959344660194175 -0.00393331310679612