Input Cluster (n=199) YAL025C MAK16 YAL039C CYC3 YAL053W YAR002W NUP60 YAR042W SWH1 YAR071W PHO11 YBL029W YBL038W MRPL16 YBL039C URA7 YBL074C AAR2 YBL095W YBR028C YBR031W RPL4A YBR084C-A RPL19A YBR085W AAC3 YBR105C VID24 YBR106W PHO88 YBR112C CYC8 YBR161W YCL038C AUT4 YCL047C YCL048W YCL055W KAR4 YCL056C YCL073C YCR024C YCR065W HCM1 YDL047W SIT4 YDL139C SCM3 YDL185W TFP1 YDL229W SSB1 YDR052C DBF4 YDR069C DOA4 YDR089W YDR211W GCD6 YDR214W AHA1 YDR247W YDR308C SRB7 YDR310C SUM1 YDR311W TFB1 YEL027W CUP5 YEL032W MCM3 YER036C KRE30 YER037W PHM8 YER049W YER110C KAP123 YER122C GLO3 YER123W YCK3 YER132C PMD1 YER159C BUR6 YER169W RPH1 YFL017C GNA1 YGL008C PMA1 YGL056C SDS23 YGL223C COG1 YGR068C YGR077C PEX8 YGR078C PAC10 YGR079W YGR106C YGR121C MEP1 YGR125W YGR127W YGR159C NSR1 YGR175C ERG1 YGR206W YGR229C SMI1 YGR240C PFK1 YGR243W YGR258C RAD2 YGR280C PXR1 YHL011C PRS3 YHR009C YHR031C RRM3 YHR032W YHR039C MSC7 YHR066W SSF1 YHR071W PCL5 YHR082C KSP1 YHR149C YHR150W YHR205W SCH9 YHR215W PHO12 YIL009W FAA3 YIL056W YIL060W YIL061C SNP1 YIL066C RNR3 YIL094C LYS12 YIL096C YIL130W GIN1 YIL131C FKH1 YIR007W YIR014W YJL005W CYR1 YJL044C GYP6 YJL050W MTR4 YJL080C SCP160 YJL089W SIP4 YJL149W YJL151C SNA3 YJR047C ANB1 YJR048W CYC1 YJR103W URA8 YJR113C RSM7 YKL029C MAE1 YKL042W SPC42 YKL056C YKL079W SMY1 YKL108W SLD2 YKL201C MNN4 YKL217W JEN1 YKR011C YKR041W YKR045C YKR075C YKR098C UBP11 YKR099W BAS1 YLL045C RPL8B YLR018C POM34 YLR019W PSR2 YLR026C SED5 YLR063W YLR223C IFH1 YLR224W YLR249W YEF3 YLR277C YSH1 YLR278C YLR316C TAD3 YLR318W EST2 YLR446W YLR455W YML035C AMD1 YML043C RRN11 YML055W SPC2 YML056C IMD4 YML059C YML113W DAT1 YML114C TAF8 YML121W GTR1 YMR043W MCM1 YMR070W MOT3 YMR108W ILV2 YMR146C TIF34 YMR147W YMR182C RGM1 YMR205C PFK2 YMR244W YMR278W YMR290C HAS1 YMR292W GOT1 YMR296C LCB1 YMR321C YNL078W NIS1 YNL079C TPM1 YNL112W DBP2 YNL141W AAH1 YNL142W MEP2 YNL180C RHO5 YNL190W YNL201C PSY2 YNL261W ORC5 YNR013C PHO91 YNR017W MAS6 YNR072W HXT17 YNR074C YOL006C TOP1 YOL059W GPD2 YOL066C RIB2 YOL158C ENB1 YOR051C YOR054C YOR081C YOR083W WHI5 YOR108W YOR114W YOR178C GAC1 YOR230W WTM1 YOR302W YOR304C-A YOR305W YOR334W MRS2 YOR337W TEA1 YOR355W GDS1 YOR370C MRS6 YPL024W NCE4 YPL026C SKS1 YPL050C MNN9 YPL116W HOS3 YPL131W RPL5 YPL184C YPL189W GUP2 YPL221W BOP1 YPL277C YPR010C RPA135 YPR022C YPR036W VMA13 YPR078C YPR079W MRL1 Genes Not Found: YHR214C-B MIPS Functional Classification Category p-value In Category from Cluster k f nucleus 0.00106521 MAK16 AAR2 CYC8 KAR4 HCM1 DBF4 DOA4 SRB7 SUM1 TFB1 MCM3 KAP123 GLO3 YCK3 BUR6 NSR1 SMI1 RAD2 SSF1 KSP1 SNP1 FKH1 MTR4 SCP160 SIP4 SLD2 BAS1 IFH1 YSH1 EST2 RRN11 DAT1 MCM1 RGM1 DBP2 ORC5 TOP1 WTM1 TEA1 RPA135 40 774 other cation transporters (Na, K, Ca , NH4, etc.) 0.00112286 TFP1 CUP5 PMA1 MEP1 MEP2 VMA13 6 38 phosphate metabolism 0.00353056 PHO11 PHO88 PHO12 GTR1 PHO91 5 33 MIPS Phenotypes Category p-value In Category from Cluster k f Slow-growth (slg) 0.00325195 RPL19A SIT4 CUP5 BUR6 PAC10 PRS3 SCH9 SNP1 SCP160 SIP4 YKL056C IFH1 AMD1 GTR1 TPM1 DBP2 16 236 MIPS Subcellular Localization Category p-value In Category from Cluster k f nucleus 0.00445438 MAK16 SWH1 AAR2 CYC8 KAR4 HCM1 DBF4 DOA4 SRB7 TFB1 MCM3 KAP123 GLO3 YCK3 BUR6 NSR1 SMI1 RAD2 SSF1 KSP1 SNP1 FKH1 MTR4 SCP160 SIP4 BAS1 POM34 IFH1 YSH1 RRN11 DAT1 TAF8 MCM1 RGM1 DBP2 ORC5 TOP1 WTM1 TEA1 RPA135 40 836 MIPS Protein Complexes Category p-value In Category from Cluster k f Phosphofructokinase 0.00100339 PFK1 PFK2 2 2 MIPS Protein Classes Category p-value In Category from Cluster k f RAN family 3.1551e-05 YDR247W KSP1 SKS1 3 3 GO Molecular Function Category p-value In Category from Cluster k f CTP synthase [GO:0003883] 0.00100339 URA7 URA8 2 2 6-phosphofructokinase [GO:0003872] 0.00100339 PFK1 PFK2 2 2 deaminase [GO:0019239] 0.0015696 TAD3 AMD1 AAH1 3 8 phosphate transporter [GO:0015114] 0.00294706 PHO88 PHO91 2 3 ammonium transporter [GO:0008519] 0.00294706 MEP1 MEP2 2 3 transcriptional repressor [GO:0016564] 0.00430951 CYC8 RPH1 MOT3 3 11 GO Biological Process Category p-value In Category from Cluster k f negative regulation of transcription [GO:0016481] 0.000189889 CYC8 TFB1 BUR6 RPH1 DAT1 RGM1 GAC1 7 39 negative regulation of transcription from Pol II promoter [GO:0000122] 0.000431869 TFB1 BUR6 RPH1 DAT1 RGM1 GAC1 6 32 negative regulation of transcription, DNA-dependent [GO:0045892] 0.000970837 TFB1 BUR6 RPH1 DAT1 RGM1 GAC1 6 37 regulation of cell size [GO:0008361] 0.0015696 PRS3 SCH9 WHI5 3 8 nucleobase metabolism [GO:0009112] 0.00166253 URA7 PRS3 URA8 BAS1 AAH1 5 28 phosphate transport [GO:0006817] 0.00229957 PHO88 GTR1 PHO91 3 9 nucleobase biosynthesis [GO:0046112] 0.00262786 URA7 PRS3 URA8 BAS1 4 19 organic cation transport [GO:0015695] 0.00294706 MEP1 MEP2 2 3 ammonium transport [GO:0015696] 0.00294706 MEP1 MEP2 2 3 GO Cellular Component Category p-value In Category from Cluster k f 6-phosphofructokinase complex [GO:0005945] 0.00100339 PFK1 PFK2 2 2 SMART Domains Category p-value In Category from Cluster k f PFam-A Domains Category p-value In Category from Cluster k f PF00365 (PFK) 0.00100339 PFK1 PFK2 2 2 PF00909 (Ammonium_transp) 0.00294706 MEP1 MEP2 2 3 Yeast Two Hybrid - Uetz Category p-value In Category from Cluster k f Yeast Two Hybrid - Ito (core) Category p-value In Category from Cluster k f YJR103W (URA8) 0.00100339 URA7 URA8 2 2 Yeast Two Hybrid - Ito (full) Category p-value In Category from Cluster k f YLR147C (SMD3) 0.00294706 URA8 HXT17 2 3 YJR103W (URA8) 0.00294706 URA7 URA8 2 3 Synthetic Genetic Array Analysis Category p-value In Category from Cluster k f MDS Proteomics Complexes Category p-value In Category from Cluster k f Cellzome Complexes Category p-value In Category from Cluster k f YMR205C (PFK2) 0.00100339 PFK1 PFK2 2 2 YNL313C 0.00100443 TFP1 KAP123 LYS12 3 7 Proteome Localization--Observed Category p-value In Category from Cluster k f Proteome Localization--Predicted+Observed Category p-value In Category from Cluster k f nuc 0.00245152 MAK16 NUP60 AAR2 YBR028C CYC8 KAR4 HCM1 SCM3 DBF4 YDR089W SRB7 SUM1 TFB1 MCM3 YER049W KAP123 PMD1 BUR6 RPH1 SDS23 NSR1 SMI1 RAD2 PXR1 SSF1 PCL5 YHR150W SNP1 YIL096C CYR1 MTR4 SPC42 SLD2 MNN4 YKR041W BAS1 IFH1 YSH1 YLR278C EST2 YLR455W RRN11 DAT1 TAF8 MCM1 MOT3 RGM1 HAS1 TPM1 DBP2 RHO5 ORC5 TOP1 YOR051C YOR081C WHI5 WTM1 YOR305W TEA1 GDS1 HOS3 RPA135 YPR022C 63 1435 Deletions Consortium (Essentiality, Morphology) Category p-value In Category from Cluster k f Yeast Fitness Data Category p-value In Category from Cluster k f Published Complexes Category p-value In Category from Cluster k f