Yrm1-primary_8mers_1111.1111_lteq600sum0.35thrbgdsub.txt_200 Significant Conditions: condindex ind/rep TFexpr area activator/repressor 1. Cell cycle: Expression in response to Cln3p (set 1)(1) 2 repressed 0.36 0.099431945 -0.0357955 0.00181170176470588 5. Expression during the cell cycle (alpha factor arrest and release)(4) 9 repressed -0.08 0.1000014 0.008000112 6. Expression during the cell cycle (cdc15 arrest and release)(23) 46 repressed 0.03 0.104337192 -0.003130116 6. Expression during the cell cycle (cdc15 arrest and release)(24) 47 repressed -0.23 0.114848768 0.026415217 8. Expression during the cell cycle (cell size selection and release)(10) 74 induced -0.17 0.100247853 -0.017042135 10. Sporulation: Ectopic expression of Ndt80; deletion of Ndt80: early, mid,(3) 88 repressed -0.239 0.116342886 0.02780595 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(1) 89 induced -0.029 0.109494492 -0.00317534 11. Expression during diauxic shift: 9h,11h,13h,15h,17h,19h,21h(6) 94 repressed -0.396 0.107483196 0.042563346 12. Expression in tup1-deleted cells(1) 96 induced -0.252 0.125444361 -0.031611979 21. Fink: Expression in haploid ste7 deletion mutant(1) 105 repressed 0 0.09745519 0 27. Young: Expression in rpb1 mutant(1) 111 repressed 0 0.109571042 0 28. Young: Expression in srb4 mutant(1) 112 repressed 0 0.104954257 0 29. Young: Expression in srb5 mutant(1) 113 repressed 0 0.135356609 0 30. Young: Expression in med6 mutant(1) 114 repressed 0 0.108167942 0 32. Young: Expression in swi2 mutant(1) 116 repressed 0 0.145877521 0 34. Young: Expression in taf17 mutant(1) 118 repressed 0 0.096724701 0 35. Young: Expression in tfa1 mutant(1) 119 repressed -0.215 0.108878827 0.023408948 37. Young: Expression in gcn5 mutant(1) 121 repressed 0 0.100776699 0 43. Young: Expression in fcp1 deletion mutant(1) 133 repressed 0 0.104646191 0 45. Expression in snf2 mutant cells in minimal medium(1) 135 repressed 0.234 0.101116972 -0.023661371 50. Expression in response to 50 nM alpha-factor in bni1 deletion mutant: 60,90,120 min(1) 153 induced -0.007 0.111927745 -0.000783494 63. Expression in response to alpha-factor in fus3 loss-of-function mutant cells(1) 168 induced -0.055 0.114494492 -0.006297197 79. Expression in fus3 deletion mutant cells(1) 185 induced -0.04 0.127334298 -0.005093372 82. Expression in response to alpha-factor in fus3 deletion mutant cells(1) 188 repressed -0.152 0.100762229 0.015315859 100. Young: Expression in spt20 deletion mutant(1) 206 repressed 0 0.144234503 0 102. Young: Expression in taf25_2 deletion mutant(1) 208 repressed 0 0.120050411 0 105. Young: Expression in taf90 deletion mutant(1) 211 repressed 0 0.106966953 0 106. Young: Expression in tsm1 deletion mutant(1) 212 repressed 0 0.109072069 0 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(4) 216 repressed 0 0.099033327 0 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(8) 220 repressed 0 0.16215506 0 Heat shock unpublished data. From Eisen article: heat:0,10,20,40,80,160; dtt:15,30,60,120; cold:0,20,40,160(10) 222 repressed 0 0.102303491 0 111. Rosetta 2000: Expression in aep2 deletion mutant (1) 230 repressed 0.193 0.111807319 -0.021578813 117. Rosetta 2000: Expression in ard1 deletion mutant (1) 236 repressed 0.093 0.130982076 -0.012181333 134. Rosetta 2000: Expression in cka2 deletion mutant (1) 253 repressed 0.03 0.117231143 -0.003516934 163. Rosetta 2000: Expression in erg4 (haploid **7) deletion mutant (1) 282 repressed 0.083 0.114336258 -0.009489909 165. Rosetta 2000: Expression in erg6 deletion mutant (1) 284 repressed 0.036 0.114520631 -0.004122743 170. Rosetta 2000: Expression in fpr1 deletion mutant (1) 289 induced 0.296 0.099214899 0.02936761 173. Rosetta 2000: Expression in fus3 (haploid) deletion mutant (1) 292 induced -0.133 0.127334298 -0.016935462 175. Rosetta 2000: Expression in gal83 deletion mutant (1) 294 repressed 0.086 0.098409261 -0.008463196 181. Rosetta 2000: Expression in gyp1 deletion mutant (1) 300 induced -0.05 0.109288648 -0.005464432 201. Rosetta 2000: Expression in kre1 deletion mutant (1) 320 induced -0.076 0.104960325 -0.007976985 207. Rosetta 2000: Expression in med2 (haploid) deletion mutant (1) 326 repressed 0.203 0.138443335 -0.028103997 211. Rosetta 2000: Expression in msu1 deletion mutant (1) 330 repressed 0.08 0.121135176 -0.009690814 212. Rosetta 2000: Expression in npr2 deletion mutant (1) 331 induced 0.04 0.103879761 0.00415519 214. Rosetta 2000: Expression in nta1 deletion mutant (1) 333 induced 0.179 0.124141617 0.022221349 260. Rosetta 2000: Expression in scs7 deletion mutant (1) 379 induced 0.033 0.100389283 0.003312846 263. Rosetta 2000: Expression in she4 deletion mutant (1) 382 repressed -0.057 0.098815347 0.005632475 283. Rosetta 2000: Expression in swi4 deletion mutant (1) 402 induced 0.07 0.103983383 0.007278837 290. Rosetta 2000: Expression in tup1 (haploid) deletion mutant (1) 409 induced 0.179 0.108442868 0.019411273 291. Rosetta 2000: Expression in ubp8 deletion mutant (1) 410 induced 0 0.103022778 0 298. Rosetta 2000: Expression in vps8 deletion mutant (1) 417 repressed 0.046 0.102476195 -0.004713905 302. Rosetta 2000: Expression in yap1 deletion mutant (1) 421 induced 0 0.105380881 0 312. Rosetta 2000: Expression in yel028w deletion mutant (1) 431 repressed 0.1 0.109861837 -0.010986184 322. Rosetta 2000: Expression in yer034w deletion mutant (1) 441 induced 0.153 0.117413648 0.017964288 324. Rosetta 2000: Expression in yer044c (haploid) deletion mutant (1) 443 repressed 0.279 0.102222274 -0.028520014 325. Rosetta 2000: Expression in yer050c deletion mutant (1) 444 repressed 0.063 0.152649365 -0.00961691 328. Rosetta 2000: Expression in yer071c deletion mutant (1) 447 induced 0.126 0.102590553 0.01292641 339. Rosetta 2000: Expression in yhr031c deletion mutant (1) 458 repressed 0.013 0.106857263 -0.001389144 346. Rosetta 2000: Expression in yml005w deletion mutant (1) 465 induced 0.206 0.137753454 0.028377212 348. Rosetta 2000: Expression in yml018c deletion mutant (1) 467 induced -0.023 0.099282114 -0.002283489 364. Rosetta 2000: Expression in ymr141c deletion mutant (1) 483 repressed -0.282 0.102828603 0.028997666 371. Rosetta 2000: Expression in ymr269w deletion mutant (1) 490 induced -0.003 0.10603342 -0.0003181 388. Rosetta 2000: Expression in cells with FKS1 under tet promoter(1) 507 induced 0.083 0.105385549 0.008747001 395. Rosetta 2000: Expression in response to 2-deoxy-D-glucose(1) 514 induced 0.422 0.120170836 0.050712093 399. Rosetta 2000: Expression in response to FR901,228(1) 518 repressed -0.023 0.100591393 0.002313602 401. Rosetta 2000: Expression in response to HU(1) 520 induced 0.046 0.106343353 0.004891794 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(1) 527 repressed 0.21 0.100592793 -0.021124487 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(2) 528 repressed 0.09 0.107182599 -0.009646434 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,210(7) 533 induced -0.06 0.100019604 -0.006001176 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(2) 541 repressed -0.67 0.09862724 0.066080251 Expression during the cell cycle in fkh1 fkh2 mutant (alpha factor arrest and release): 0,5,30,45,60,75,90,105,120,135,150,165,180(8) 547 induced -0.03 0.105829444 -0.003174883 Meiosis in SK1 a alpha cells: 1h,2h,3h,4h,6h,8h,10h(6) 562 induced 0.369 0.095187173 0.035124067 428. Expression in strain PM38 (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 585 repressed 0.075 0.099992999 -0.007499475 431. Expression in strain PM71 (gln3 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 588 repressed 0.251 0.09959438 -0.024998189 433. Expression in strain PH2 (ure2 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 590 repressed 0.372 0.111991225 -0.041660736 439. Expression in strain Jk9-3da (wild type) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 596 repressed 0.221 0.103677651 -0.022912761 443. Expression in strain YHE710 (mks1 deletion) in response to 30 min 50 nM treatment with rapamycin in YPD(1) 600 repressed 0.142 0.100163835 -0.014223265 444. Expression in wild type versus strain YHE710 (mks1 deletion) under steady state conditions in YPD(1) 601 induced 0.294 0.103879761 0.03054065 445. Expression in response to 0.1% MMS for 60 min (average of 3 experiments)(1) 602 repressed 0 0.130837379 0 449. Expression in response to 0.1% MMS for 60 min(1) 606 repressed 0 0.107944361 0 451. Expression in response to BCNU (200 micromolar) for 60 min(1) 608 repressed 0.138 0.119793689 -0.016531529 452. Expression in response to low 4NQO (2 microgram/ml) for 60 min(1) 609 repressed 0 0.122262416 0 454. Expression in response to tBuOOH (5mM) for 60 min(1) 611 repressed 0 0.102356703 0 457. Expression of G1 arrested cells (with alpha factor) in response to 0.1% MMS for 60 min(1) 614 repressed 0 0.098557692 0 458. Expression of S arrested cells (with hydroxyurea) in response to 0.1% MMS for 60 min(1) 615 repressed 0 0.132612024 0 459. Expression of G2 arrested cells (alpha nocodazole) in response to 0.1% MMS for 60 min(1) 616 repressed 0 0.105505975 0 460. Expression of stationary phase cells in response to 0.1% MMS for 60 min(1) 617 repressed 0 0.112879014 0 461. Expression of rpn4 deletion in response to 0.1% MMS for 60 min(1) 618 repressed 0 0.102844007 0 462. Expression in response to 0.05% MMS for 60 min(1) 619 repressed 0 0.116690161 0 463. Expression in response to 0.1% MMS for 60 min(1) 620 repressed 0 0.110432226 0 464. Expression in response to 0.2% MMS for 60 min(1) 621 repressed 0 0.120535848 0 478. Expression in haploid cells in response to rapamycin (100nM) for: 0min,15min,30min,60min,120min(4) 641 repressed -1.185 0.107091113 0.126902969 479. Expression in diploid cells in response to rapamycin (100nM) for: 15min,30min,90min,120min(3) 645 repressed 0 0.115478435 0 480. Expression in haploid cells deprived to amino acids in response to rapamycin for: 15min,30min,60min,90min,120min(3) 649 repressed 1.068 0.097784261 -0.10443359 482. Expression in response to acid: 10,20,40,60,80,100 min(3) 659 repressed 0 0.107677838 0 483. Expression in response to alkali: 10,20,40,60,80,100 min(3) 665 repressed 0 0.104792289 0 483. Expression in response to alkali: 10,20,40,60,80,100 min(5) 667 repressed 0 0.106404033 0 485. Expression in response to peroxide: 10,20,40,60,120 min(2) 672 repressed -0.503 0.101127707 0.050867237 485. Expression in response to peroxide: 10,20,40,60,120 min(4) 674 repressed -0.503 0.106348954 0.053493524 488. Brown enviromental changes :Heat Shock 05 minutes hs-1(1) 686 repressed -0.76 0.099147218 0.075351886 490. Brown enviromental changes :Heat Shock 15 minutes hs-1(1) 688 repressed 0.07 0.104860437 -0.007340231 491. Brown enviromental changes :Heat Shock 20 minutes hs-1(1) 689 repressed -0.29 0.101568335 0.029454817 492. Brown enviromental changes :Heat Shock 30 minutes hs-1(1) 690 repressed 0.1 0.110110624 -0.011011062 495. Brown enviromental changes :Heat Shock 80 minutes hs-1(1) 693 repressed 0 0.106633215 0 498. Brown enviromental changes :Heat Shock 000 minutes hs-2(1) 696 induced -0.28 0.100508308 -0.028142326 507. Brown enviromental changes :37C to 25C shock - 90 min(1) 705 induced 0.52 0.103257095 0.053693689 508. Brown enviromental changes :heat shock 17 to 37, 20 minutes(1) 706 repressed -0.1 0.104396004 0.0104396 509. Brown enviromental changes :heat shock 21 to 37, 20 minutes(1) 707 repressed -0.38 0.100408887 0.038155377 510. Brown enviromental changes :heat shock 25 to 37, 20 minutes(1) 708 repressed -0.15 0.12378174 0.018567261 511. Brown enviromental changes :heat shock 29 to 37, 20 minutes(1) 709 repressed 0.48 0.103720127 -0.049785661 517. Brown enviromental changes :29C +1M sorbitol to 33C + 1M sorbitol - 5 minutes(1) 715 repressed 0.36 0.099978062 -0.035992102 523. Brown enviromental changes :constant 0.32 mM H2O2 (10 min) redo(1) 721 repressed 0.03 0.099388536 -0.002981656 524. Brown enviromental changes :constant 0.32 mM H2O2 (20 min) redo(1) 722 repressed -0.11 0.110485437 0.012153398 527. Brown enviromental changes :constant 0.32 mM H2O2 (50 min) redo(1) 725 repressed -0.22 0.103788275 0.02283342 528. Brown enviromental changes :constant 0.32 mM H2O2 (60 min) redo(1) 726 repressed -0.49 0.107618559 0.052733094 548. Brown enviromental changes :2.5mM DTT 120 min dtt-1(1) 746 repressed 0.3 0.098003174 -0.029400952 549. Brown enviromental changes :2.5mM DTT 180 min dtt-1(1) 747 repressed 0 0.103206217 0 550. Brown enviromental changes :dtt 000 min dtt-2(1) 748 induced -0.27 0.108582431 -0.029317256 551. Brown enviromental changes :dtt 015 min dtt-2(1) 749 induced -0.24 0.099634522 -0.023912285 556. Brown enviromental changes :dtt 480 min dtt-2(1) 754 induced -0.31 0.141287808 -0.043799221 558. Brown enviromental changes :1.5 mM diamide (10 min)(1) 756 repressed -0.16 0.098792009 0.015806721 559. Brown enviromental changes :1.5 mM diamide (20 min)(1) 757 repressed 0.1 0.116061426 -0.011606143 560. Brown enviromental changes :1.5 mM diamide (30 min)(1) 758 repressed 0.01 0.100442494 -0.001004425 561. Brown enviromental changes :1.5 mM diamide (40 min)(1) 759 repressed -0.07 0.099153753 0.006940763 562. Brown enviromental changes :1.5 mM diamide (50 min)(1) 760 repressed -0.09 0.106465179 0.009581866 566. Brown enviromental changes :1M sorbitol - 15 min(1) 764 repressed 0.13 0.105313667 -0.013690777 567. Brown enviromental changes :1M sorbitol - 30 min(1) 765 repressed 0.11 0.104227502 -0.011465025 579. Brown enviromental changes :aa starv 1 h(1) 777 repressed 1.03 0.0992205 -0.102197115 583. Brown enviromental changes :Nitrogen Depletion 30 min.(1) 781 repressed 0.51 0.102016897 -0.052028617 584. Brown enviromental changes :Nitrogen Depletion 1 h(1) 782 repressed 0.51 0.103363984 -0.052715632 585. Brown enviromental changes :Nitrogen Depletion 2 h(1) 783 repressed 0.13 0.126271004 -0.016415231 587. Brown enviromental changes :Nitrogen Depletion 8 h(1) 785 repressed -0.02 0.102049104 0.002040982 589. Brown enviromental changes :Nitrogen Depletion 1 d(1) 787 repressed -0.49 0.107851475 0.052847223 590. Brown enviromental changes :Nitrogen Depletion 2 d(1) 788 repressed -0.76 0.109797423 0.083446042 591. Brown enviromental changes :Nitrogen Depletion 3 d(1) 789 repressed -0.72 0.108803678 0.078338648 592. Brown enviromental changes :Nitrogen Depletion 5 d(1) 790 repressed -0.69 0.106236931 0.073303482 593. Brown enviromental changes :Diauxic Shift Timecourse(1) 791 induced -0.03 0.11025112 -0.003307534 603. Brown enviromental changes :YPD 6 h ypd-2(1) 794 repressed -0.37 0.097621359 0.036119903 612. Brown enviromental changes :YPD stationary phase 4 h ypd-1(1) 803 induced 0.05 0.097454724 0.004872736 628. Brown enviromental changes :DBY7286 + 0.3 mM H2O2 (20 min)(1) 819 repressed -0.19 0.09907627 0.018824491 638. Brown enviromental changes :glucose car-1(1) 829 induced 0 0.096641617 0 642. Brown enviromental changes :YP ethanol vs reference pool car-2(1) 833 repressed -0.41 0.128090459 0.052517088 643. Brown enviromental changes :YP fructose vs reference pool car-2(1) 834 induced 0 0.106174851 0 669. Expression in Rho0 containing rtg3 deletion vs Rho0(1) 857 induced 0 0.095695482 0 680. Expression in GCR1 YPD versus GCR1 YPGL(1) 868 induced 0.043 0.103923637 0.004468716 DES460 + 0.02% MMS - 30 min 921 repressed 0.32 0.11215506 -0.035889619 DES460 + 0.2% MMS - 45 min 922 repressed 0.223 0.097334298 -0.021705548 DES459 (mec1-) + 0.02% MMS - 45 min 929 repressed 0.01 0.100838779 -0.001008388 DES459 (mec1-) + 0.02% MMS - 90 min 931 repressed -0.23 0.10201503 0.023463457 dun1- + 0.02% MMs - 30 min 933 repressed -0.19 0.118486744 0.022512481 wt_plus_gamma_20_min 938 repressed 0.26 0.104865105 -0.027264927 wt_plus_gamma_30_min 939 repressed 0.34 0.116403099 -0.039577054 mec1_plus_gamma_20_min 950 repressed 0.34 0.138386389 -0.047051372 mec1_plus_gamma_30_min 951 repressed 0.05 0.112271751 -0.005613588 mec1_plus_gamma_120_min 955 repressed -0.14 0.114915982 0.016088237 DES460 + 0.02% MMS - 5 min 966 repressed 0.65 0.123944642 -0.080564017 100 microM BCS 30 min 967 induced 0.12 0.121172984 0.014540758 gal1+gal 975 repressed -0.306 0.095984877 0.029371372 gal2+gal 976 repressed 0.126 0.100732356 -0.012692277 gal7+gal 981 repressed -0.093 0.109322722 0.010167013 BY4741 GAL t=60min vs. t=0 (YT00259) 997 induced 0 0.099664862 0 sfp1D GLU vs. BY4741 GLU (YT00238) 999 repressed 0.02 0.10457991 -0.002091598 sfp1::GALSFP1 t=30min GAL vs. t=0 RAFF (YT00271) 1003 induced 0.05 0.106460045 0.005323002 sfp1::GALSFP1 t=50min GAL vs. t=0 RAFF (YT00265) 1005 induced 0.01 0.145746826 0.001457468 sfp1::GALSFP1 t=60min GAL vs. t=0 RAFF (YT00267) 1006 induced 0 0.109128547 0 sfp1::GALSFP1 t=90min GAL vs. t=0 RAFF (YT00266) 1007 induced 0.75 0.136220127 0.102165095 YBR193C 1023 repressed 0.17102 0.108515217 -0.018558272 YDL196W 1038 induced 0.1352 0.097398245 0.013168243 YDR091C 1041 repressed -0.14126 0.105893391 0.0149585 YDR464W 1046 induced -0.11371 0.112757655 -0.012821673 YER172C 1050 repressed 0.15445 0.096769511 -0.014946051 YGR280C 1064 induced -0.0022042 0.099308252 -0.000218895 YIL106W 1073 repressed -0.11537 0.100271191 0.011568287 YLR060W 1100 repressed 0.084226 0.109363798 -0.009211275 YNL310C 1137 repressed -0.11113 0.104126214 0.011571546 YOR146W 1152 repressed 0.20838 0.10295183 -0.021453102 YPR033C 1175 repressed 0.17506 0.101101568 -0.017698841 YHR205W 1201 induced -0.045063 0.101072629 -0.004554636 YLR106C 1209 induced -0.016345 0.106005881 -0.001732666 YNL149C 1213 repressed 0.074249 0.126806852 -0.009415282 YOR004W 1219 induced 0.021248 0.101837659 0.002163847 CRZ1OE+ 1227 repressed 0.0613535 0.096675691 -0.005931392 MOT3OE+ 1247 induced 0.120563 0.110338872 0.013302785 RFX1OE+ 1253 induced -0.02831 0.104671397 -0.002963247 ROX1OE+ 1256 repressed 0.036475 0.145542849 -0.005308675 SFP1OE+ 1258 induced -0.036332 0.246619212 -0.008960169 SOK2OE+ 1261 induced 0.0891275 0.101897872 0.009081903 TOS8OE+ 1269 induced -0.0768505 0.123951176 -0.00952571 UPC2OE+ 1270 induced 0.028647 0.105814507 0.003031268 YHP1OE+ 1273 induced 0.08701 0.100709951 0.008762773 ZAP1OE+ 1277 induced 0.0236325 0.12600168 0.002977735 WT/cst6+ 1282 induced -0.0425 0.112689974 -0.004789324 WT/msn4+ 1301 repressed 0.0213925 0.131193521 -0.002806557 WT/sfp1+ 1309 repressed 0.091514 0.100395351 -0.00918758