Input Cluster (n=191) YAL001C TFC3 YAL002W VPS8 YAL062W GDH3 YBL052C SAS3 YBR001C NTH2 YBR054W YRO2 YBR055C PRP6 YBR056W YBR154C RPB5 YBR181C RPS6B YBR249C ARO4 YBR286W APE3 YBR291C CTP1 YCL001W-A YCL047C YCR004C YCP4 YCR026C YCR037C PHO87 YCR090C YDL003W MCD1 YDL004W ATP16 YDL005C MED2 YDL028C MPS1 YDL046W YDL077C VAM6 YDL117W CYK3 YDL130W-A STF1 YDL131W LYS21 YDL134C PPH21 YDR023W SES1 YDR032C PST2 YDR040C ENA1 YDR141C DOP1 YDR161W TCI1 YDR206W EBS1 YDR240C SNU56 YDR248C YDR253C MET32 YDR254W CHL4 YDR317W YDR382W RPP2B YDR419W RAD30 YDR434W GPI17 YDR457W TOM1 YDR506C YDR524C AGE1 YEL009C GCN4 YEL023C YEL027W CUP5 YEL030W ECM10 YER089C PTC2 YER090W TRP2 YER111C SWI4 YFL053W DAK2 YFL054C YFR001W LOC1 YFR011C YFR012W YFR023W PES4 YGL001C ERG26 YGL008C PMA1 YGL032C AGA2 YGL036W YGL037C PNC1 YGL105W ARC1 YGL263W COS12 YGR108W CLB1 YGR163W GTR2 YGR187C HGH1 YGR189C CRH1 YGR205W YGR253C PUP2 YGR273C YGR285C ZUO1 YHL022C SPO11 YHR001W OSH7 YHR021C RPS27B YHR079C IRE1 YHR085W IPI1 YHR146W CRP1 YHR216W IMD2 YIL060W YIL061C SNP1 YIL073C SPO22 YIL106W MOB1 YIL116W HIS5 YIR007W YJL008C CCT8 YJL039C NUP192 YJL159W HSP150 YJR001W YJR005W APL1 YJR010W MET3 YJR094C IME1 YKL014C YKL048C ELM1 YKL049C CSE4 YKL061W YKL109W HAP4 YKL149C DBR1 YKL152C GPM1 YKL178C STE3 YKL188C PXA2 YKR014C YPT52 YKR089C YKR090W PXL1 YLL015W BPT1 YLL042C APG10 YLL054C YLR018C POM34 YLR019W PSR2 YLR028C ADE16 YLR045C STU2 YLR049C YLR135W SLX4 YLR166C SEC10 YLR167W RPS31 YLR191W PEX13 YLR195C NMT1 YLR196W PWP1 YLR226W BUR2 YLR238W YLR272C YCS4 YLR346C YLR354C TAL1 YLR398C SKI2 YLR404W YLR411W CTR3 YLR456W YML092C PRE8 YML118W NGL3 YMR023C MSS1 YMR024W MRPL3 YMR132C YMR133W REC114 YMR193W MRPL24 YMR200W ROT1 YMR204C YMR234W RNH1 YMR238W DFG5 YMR257C PET111 YMR284W YKU70 YNL014W HEF3 YNL056W YNL058C YNL085W MKT1 YNL122C YNL185C MRPL19 YNL308C KRI1 YNL323W LEM3 YNL325C FIG4 YNL326C YOL032W YOL041C NOP12 YOL088C MPD2 YOL091W SPO21 YOL115W TRF4 YOL122C SMF1 YOR001W RRP6 YOR018W ROD1 YOR058C ASE1 YOR095C RKI1 YOR114W YOR128C ADE2 YOR177C MPC54 YOR182C RPS30B YOR184W SER1 YOR231W MKK1 YOR279C RFM1 YOR308C SNU66 YOR356W YPL007C TFC8 YPL020C ULP1 YPL059W GRX5 YPL065W VPS28 YPL075W GCR1 YPL088W YPL110C YPL117C IDI1 YPL140C MKK2 YPL177C CUP9 YPL178W CBC2 YPL187W MF(ALPHA)1 YPL203W TPK2 YPL226W NEW1 YPL227C ALG5 YPL259C APM1 YPL266W DIM1 YPR001W CIT3 YPR035W GLN1 YPR036W VMA13 Genes Not Found: YBR012W-A YBR012W-B YER138C YJL113W YJL114W YJR028W YJR029W YMR050C YMR051C MIPS Functional Classification Category p-value In Category from Cluster k f transport mechanism 0.000337859 ATP16 ENA1 CUP5 PMA1 PXA2 BPT1 HEF3 NEW1 VMA13 9 73 REGULATION OF / INTERACTION WITH CELLULAR ENVIRONMENT 0.0027524 PHO87 ATP16 ENA1 YDR506C CUP5 PMA1 CRP1 STE3 CTR3 FIG4 SMF1 CUP9 TPK2 VMA13 14 198 ionic homeostasis 0.00490447 PHO87 ATP16 ENA1 YDR506C CUP5 PMA1 CTR3 SMF1 CUP9 VMA13 10 126 MIPS Phenotypes Category p-value In Category from Cluster k f G2/M arrest 0.000906505 MCD1 PPH21 TOM1 CLB1 CSE4 YKU70 6 38 MIPS Subcellular Localization Category p-value In Category from Cluster k f MIPS Protein Complexes Category p-value In Category from Cluster k f MIPS Protein Classes Category p-value In Category from Cluster k f other transcription factors 0.00145687 MED2 SWI4 IME1 GCR1 4 17 ion-transport ATPases 0.00280972 ATP16 STF1 ENA1 CUP5 PMA1 VMA13 6 47 ATPases 0.00388289 ATP16 STF1 ENA1 CUP5 PMA1 CCT8 PXA2 BPT1 HEF3 NEW1 VMA13 11 142 GO Molecular Function Category p-value In Category from Cluster k f protein threonine/tyrosine kinase [GO:0004712] 0.000891006 MPS1 MKK1 MKK2 3 7 carbon-carbon lyase [GO:0016830] 0.00492217 ARO4 LYS21 TRP2 ADE2 CIT3 5 37 GO Biological Process Category p-value In Category from Cluster k f cell growth and/or maintenance [GO:0008151] 0.000130073 TFC3 VPS8 GDH3 SAS3 NTH2 PRP6 RPB5 RPS6B ARO4 APE3 CTP1 PHO87 MCD1 ATP16 MED2 MPS1 VAM6 CYK3 STF1 LYS21 PPH21 SES1 ENA1 DOP1 EBS1 SNU56 MET32 CHL4 RPP2B RAD30 GPI17 TOM1 AGE1 GCN4 CUP5 ECM10 PTC2 TRP2 SWI4 DAK2 LOC1 PES4 ERG26 PMA1 AGA2 PNC1 ARC1 CLB1 PUP2 ZUO1 SPO11 OSH7 RPS27B IRE1 IMD2 SNP1 SPO22 MOB1 HIS5 CCT8 NUP192 HSP150 APL1 MET3 IME1 ELM1 CSE4 HAP4 DBR1 GPM1 STE3 PXA2 YPT52 BPT1 APG10 POM34 PSR2 ADE16 STU2 SLX4 SEC10 RPS31 PEX13 NMT1 BUR2 YCS4 TAL1 SKI2 CTR3 PRE8 MSS1 MRPL3 REC114 MRPL24 ROT1 RNH1 DFG5 PET111 YKU70 HEF3 MRPL19 KRI1 FIG4 NOP12 MPD2 SPO21 TRF4 SMF1 RRP6 ASE1 RKI1 ADE2 MPC54 RPS30B SER1 MKK1 SNU66 YOR356W TFC8 ULP1 GRX5 VPS28 GCR1 YPL088W IDI1 MKK2 CUP9 CBC2 MF(ALPHA)1 TPK2 ALG5 APM1 DIM1 CIT3 GLN1 VMA13 136 3657 mitosis [GO:0007067] 0.00021145 MCD1 MPS1 PPH21 TOM1 CLB1 MOB1 CSE4 STU2 BUR2 YCS4 TRF4 ASE1 12 117 M phase of mitotic cell cycle [GO:0000087] 0.000248213 MCD1 MPS1 PPH21 TOM1 CLB1 MOB1 CSE4 STU2 BUR2 YCS4 TRF4 ASE1 12 119 M phase [GO:0000279] 0.000526928 MCD1 MPS1 CYK3 PPH21 TOM1 CLB1 SPO11 SPO22 MOB1 IME1 ELM1 CSE4 STU2 SEC10 BUR2 YCS4 REC114 TRF4 ASE1 19 270 nuclear division [GO:0000280] 0.000656484 MCD1 MPS1 PPH21 TOM1 CLB1 SPO11 SPO22 MOB1 IME1 CSE4 STU2 BUR2 YCS4 REC114 TRF4 ASE1 16 211 mitotic prophase [GO:0000088] 0.00204383 MCD1 YCS4 TRF4 3 9 mitotic chromosome condensation [GO:0007076] 0.00204383 MCD1 YCS4 TRF4 3 9 ion transport [GO:0006811] 0.00247217 CTP1 PHO87 ATP16 STF1 ENA1 PMA1 BPT1 CTR3 SMF1 9 96 mitotic cell cycle [GO:0000278] 0.0029336 MCD1 MPS1 PPH21 TOM1 PTC2 PES4 CLB1 MOB1 CSE4 STU2 SLX4 BUR2 YCS4 RNH1 TRF4 ASE1 ULP1 17 266 GO Cellular Component Category p-value In Category from Cluster k f SMART Domains Category p-value In Category from Cluster k f PFam-A Domains Category p-value In Category from Cluster k f Yeast Two Hybrid - Uetz Category p-value In Category from Cluster k f Yeast Two Hybrid - Ito (core) Category p-value In Category from Cluster k f Yeast Two Hybrid - Ito (full) Category p-value In Category from Cluster k f YGR092W (DBF2) 0.00271666 MOB1 YKL061W 2 3 Synthetic Genetic Array Analysis Category p-value In Category from Cluster k f MDS Proteomics Complexes Category p-value In Category from Cluster k f YDR386W (MUS81) 0.00222373 LOC1 PWP1 MKT1 KRI1 NOP12 5 31 Cellzome Complexes Category p-value In Category from Cluster k f YFL017W-A (SMX2) 0.00145687 PRP6 SNU56 SNP1 SNU66 4 17 YBR119W (MUD1) 0.00204383 SNU56 SNP1 CBC2 3 9 Proteome Localization--Observed Category p-value In Category from Cluster k f Proteome Localization--Predicted+Observed Category p-value In Category from Cluster k f Deletions Consortium (Essentiality, Morphology) Category p-value In Category from Cluster k f Yeast Fitness Data Category p-value In Category from Cluster k f Published Complexes Category p-value In Category from Cluster k f