-Genomic Data Links
Protein
Hoxd1
UniPROBE Accession Number
UP00140
Species
Mus musculus
Domain
Homeobox
Uniprot
Q01822
Name and Synonyms
homeo box D1
Homeobox protein Hox-D1, Hox-4.9, Hoxd-1
IHOP
121751
Description
None Available
RefSeq
NP_034597
Hoxd1 DNA binding domain
1   SAIRTNFSTK QLTELEKEFH FNKYLTRARR IEIANCLQLN DTQVKIWFQN
51  RRMKQKK
JASPAR
None Available
-PBM Motif Data for Hoxd1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CTAATTAG (E.S. 0.49754)
CTAATTAG (E.S. 0.49754)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNRATNDNNN
NNNHNATYNN
Downloads
Download the zip of all Hoxd1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxd1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=140&sourceDB=uniprobe
-Hoxd1 Datasets
Clone ID Expression Expression Method Save View
pTH3448 #1 E. coli save search
Clone pTH3448 insert sequence
1   APKKSKLSEY GATSPPSAIR TNFSTKQLTE LEKEFHFNKY LTRARRIEIA
51  NCLQLNDTQV KIWFQNRRMK QKKREREGLL ATAASVASIK LPR
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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