-Genomic Data Links
Protein
Msx2
UniPROBE Accession Number
UP00156
Species
Mus musculus
Domain
Homeobox
Uniprot
Q03358
Name and Synonyms
homeo box, msh-like 2
BB122635, Homeobox protein MSX-2, Hox8, Hox-8, Hox8.1, Hox-8.1, Msx-2
IHOP
122901
Description
None Available
RefSeq
NP_038629
Msx2 DNA binding domain
1   RKPRTPFTTS QLLALERKFR QKQYLSIAER AEFSSSLNLT ETQVKIWFQN
51  RRAKAKR
JASPAR
None Available
-PBM Motif Data for Msx2
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CCAATTAG (E.S. 0.49762)
CTAATTGG (E.S. 0.49762)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNYMATYWNN
NNWRATKRNN
Downloads
Download the zip of all Msx2 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Msx2 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=156&sourceDB=uniprobe
-Msx2 Datasets
Clone ID Expression Expression Method Save View
pTH3449 #1 E. coli save search
Clone pTH3449 insert sequence
1   RHMSPTTCTL RKHKTNRKPR TPFTTSQLLA LERKFRQKQY LSIAERAEFS
51  SSLNLTETQV KIWFQNRRAK AKRLQEAELE KLKMAAKPML PSG
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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