-Genomic Data Links
Protein
Hmbox1
UniPROBE Accession Number
UP00161
Species
Mus musculus
Domain
Homeobox
Uniprot
Q8BJA3
Name and Synonyms
homeobox containing 1
AI451877, AI604847, F830020C16Rik, Homeobox-containing protein 1
IHOP
152603
Description
None Available
RefSeq
NP_796312
Hmbox1 DNA binding domain
1   RGSRFTWRKE CLAVMESYFN ENQYPDEAKR EEIANACNAV IQKPGKKLSD
51  LERVTSLKVY NWFANRRKEI KR
JASPAR
None Available
-PBM Motif Data for Hmbox1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CTAGTTAA (E.S. 0.49617)
TTAACTAG (E.S. 0.49617)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNNGWNNNN
NNNNWCNNNN
Downloads
Download the zip of all Hmbox1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hmbox1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=161&sourceDB=uniprobe
-Hmbox1 Datasets
Clone ID Expression Expression Method Save View
pTH2674 #1 IVT save search
Clone pTH2674 insert sequence
1    QTPPPVSATP GTFRLRRGSR FTWRKECLAV MESYFNENQY PDEAKREEIA
51   NACNAVIQKP GKKLSDLERV TSLKVYNWFA NRRKEIKRRA NIAAILESHG
101  IDVQSPGG
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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