-Genomic Data Links
Protein
Rhox11
UniPROBE Accession Number
UP00193
Species
Mus musculus
Domain
Homeobox
Uniprot
Q810N8
Name and Synonyms
reproductive homeobox 11
BC049711, Gm39, LOC194738, MGC58663
IHOP
151090
Description
None Available
RefSeq
NP_941000
Rhox11 DNA binding domain
1   PRKAYRFTPG QLWELQAVFV ENQYPDALKR KELAGLLNVD EQKIKDWFNN
51  KRAKYRK
JASPAR
None Available
-PBM Motif Data for Rhox11
Primary Motif (clone pTH1765 )  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GCTGTAAA (E.S. 0.49345)
TTTACAGC (E.S. 0.49345)
Primary Motif (clone pTH1765 )  (BEEML-PBM)
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Primary PWM
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Consensus
DNWACABNNN
NNNVTGTWNH
Primary Motif (clone pTH2205 )  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GCTGTAAA (E.S. 0.49365)
TTTACAGC (E.S. 0.49365)
Primary Motif (clone pTH2205 )  (BEEML-PBM)
Image Not Available. We apologize for the inconvenience.
Primary PWM
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Consensus
NNNVTRTWNN
NNWAYABNNN
Downloads
Download the zip of all Rhox11 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Rhox11 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=193&sourceDB=uniprobe
-Rhox11 Datasets
Clone ID Expression Expression Method Save View
pTH1765 #1 E. coli save search
pTH2205 #1 IVT save search
Clone pTH1765 insert sequence
1   ETSKVAETSE QSLFRIPRKA YRFTPGQLWE LQAVFVENQY PDALKRKELA
51  GLLNVDEQKI KDWFNNKRAK YRKIQREILG GKNITPTQEE LRM
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


Clone pTH2205 insert sequence
1   PEETSKVAET SEQSLFRIPR KAYRFTPGQL WELQAVFVEN QYPDALKRKE
51  LAGLLNVDEQ KIKDWFNNKR AKYRKIQREI LGGKNITPTQ EELRMKTLV
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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