-Genomic Data Links
Protein
Hlx1
UniPROBE Accession Number
UP00225
Species
Mus musculus
Domain
Homeobox
Uniprot
Q61670
Name and Synonyms
H2.0-like homeo box 1 (Drosophila)
Hlx, Homeobox protein HLX1
IHOP
121679
Description
None Available
RefSeq
NP_032276
Hlx1 DNA binding domain
1   RSWSRAVFSN LQRKGLEKRF EIQKYVTKPD RKQLAAMLGL TDAQVKVWFQ
51  NRRMKWRH
JASPAR
None Available
-PBM Motif Data for Hlx1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TAAT..ATTA (E.S. 0.49310)
TAAT..ATTA (E.S. 0.49310)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNWTNNNNN
NNNNNAWNNN
Downloads
Download the zip of all Hlx1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hlx1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=225&sourceDB=uniprobe
-Hlx1 Datasets
Clone ID Expression Expression Method Save View
pTH2350 #1 E. coli save search
Clone pTH2350 insert sequence
1   PYAVLTKDTM PQTYKRKRSW SRAVFSNLQR KGLEKRFEIQ KYVTKPDRKQ
51  LAAMLGLTDA QVKVWFQNRR MKWRHSKEAQ AQKDKDKEAG EKPSG
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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