-Genomic Data Links
Protein
Hoxc10
UniPROBE Accession Number
UP00245
Species
Mus musculus
Domain
Homeobox
Uniprot
P31257
Name and Synonyms
homeo box C10
AI506621, Homeobox protein Hox-C10, Hox-3.6, Hoxc-10
IHOP
151411
Description
None Available
RefSeq
NP_034592
Hoxc10 DNA binding domain
1   RKKRCPYTKH QTLELEKEFL FNMYLTRERR LEISKTINLT DRQVKIWFQN
51  RRMKLKK
JASPAR
None Available
-PBM Motif Data for Hoxc10
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GTCGTAAA (E.S. 0.49722)
TTTACGAC (E.S. 0.49722)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNWAYNNNN
NNNNRTWNNN
Downloads
Download the zip of all Hoxc10 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxc10 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=245&sourceDB=uniprobe
-Hoxc10 Datasets
Clone ID Expression Expression Method Save View
pTH2779 #1 E. coli save search
Clone pTH2779 insert sequence
1   IKAENTTGNW LTAKSGRKKR CPYTKHQTLE LEKEFLFNMY LTRERRLEIS
51  KTINLTDRQV KIWFQNRRMK LKKMNRENRI RELTSNFNFT
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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