-Genomic Data Links
Protein
Pax7
UniPROBE Accession Number
UP00248
Species
Mus musculus
Domain
Homeobox, PAX
Uniprot
P47239
Name and Synonyms
paired box gene 7
Paired box protein Pax-7, Pax-7
IHOP
123404
Description
None Available
RefSeq
NP_035169
Pax7 DNA binding domain
1   RRSRTTFTAE QLEELEKAFE RTHYPDIYTR EELAQRTKLT EARVQVWFSN
51  RRARWRK
JASPAR
None Available
-PBM Motif Data for Pax7
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TTAATTAA (E.S. 0.49415)
TTAATTAA (E.S. 0.49415)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNVATTWNN
NNWAATBNNN
Downloads
Download the zip of all Pax7 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Pax7 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=248&sourceDB=uniprobe
-Pax7 Datasets
Clone ID Expression Expression Method Save View
pTH3783 #1 IVT save search
Clone pTH3783 insert sequence
1    NYPRTGFPLE VSTPLGQGRV NQLGGVFING RPLPNHIRHK IVEMAHHGIR
51   PCVISRQLRV SHGCVSKILC RYQETGSIRP GAIGGSKPRQ VATPDVEKKI
101  EEYKRENPGM FSWEIRDRLL KDGHCDRSTV PSVSSISRVL RIKFGKKEDD
151  EEGDKKEEDG EKKAKHSIDG ILGDKGNRLD EGSDVESEPD LPLKRKQRRS
201  RTTFTAEQLE ELEKAFERTH YPDIYTREEL AQRTKLTEAR VQVWFSNRRA
251  RWRKQAGANQ LAAFNHLLPG GFPP
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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