|
|
| -Genomic Data |
Links |
- Protein
- Sry
|
- UniPROBE Accession Number
- UP00016
|
- Species
- Mus musculus
|
- Domain
- HMG_box
|
- Uniprot
-
Q05738
|
- Name and Synonyms
-
sex determining region of Chr Y
MGC129295, Sex-determining region Y protein, Tdf, Tdy, Testis-determining factor
|
- IHOP
-
125474
|
- RefSeq
-
NP_035694
|
- Description
- None Available
|
- JASPAR
-
MA0084
|
| -PBM Motif Data for Sry |
- Primary Motif (Seed-And-Wobble)
-
|
- Primary PWM
-
View
Save
|
- Top Kmer
-
ATTATAAT E.S. 0.482
ATTATAAT E.S. 0.482
|
- Secondary Motif (Seed-And-Wobble)
-
|
- Secondary PWM
-
View
Save
|
- Top Kmer
-
A..GAACAAT E.S. 0.480
ATTGTTC..T E.S. 0.480
|
-
Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH2833)
-
|
- PWM
-
View
|
- Consensus
-
NNNNNSATTS
SAATSNNNNN
|
-
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2833)
-
|
- PWM
-
View
|
- Consensus
-
NNNNNWBARN
NYTVWNNNNN
|
- Downloads
-
Download the
zip
of all Sry PBM files
or view the
downloads directory
for individual files.
|
- Link to TFBSshape
-
This link will take you to the corresponding entry for Sry
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=16&sourceDB=uniprobe
|
| -Sry Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
|
pTH2833 |
#1 |
AMADID #016060 |
IVT |
DNA binding domain only |
2014-08-13 |
|
|
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
|
pTH2833 |
#1 |
AMADID #015681 |
IVT |
DNA binding domain only |
2014-08-13 |
|
|
- Clone pTH2833 insert sequence
- 1 EGHVKRPMNA FMVWSRGERH KLAQQNPSMQ NTEISKQLGC RWKSLTEAEK
51 RPFFQEAQRL KILHREKYPN YKYQPHRRAK VSQRSGIL
- DNA Binding Domains (Pfam) for clone 2833
-
Region 4..72
1 VKRPMNAFMV WSRGERHKLA QQNPSMQNTE ISKQLGCRWK SLTEAEKRPF
51 FQEAQRLKIL HREKYPNYK
-
|
- References
-
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
|
|