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| -Genomic Data |
Links |
- Protein
- Irf4
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- UniPROBE Accession Number
- UP00018
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- Species
- Mus musculus
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- Domain
- IRF
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- Uniprot
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Q64287
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- Name and Synonyms
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interferon regulatory factor 4
AI385587, Interferon regulatory factor 4, IRF-4, LSIRF, Lymphocyte-specific interferon regulatory factor, NF-EM5, PU.1 interaction partner, Spip, Transcriptional activator PIP
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- IHOP
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122147
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- RefSeq
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NP_038702
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- Description
- None Available
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- JASPAR
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N/A
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| -PBM Motif Data for Irf4 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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A.CGAAACC E.S. 0.496
GGTTTCG.T E.S. 0.496
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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A.TCTCGGT E.S. 0.465
ACCGAGA.T E.S. 0.465
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH3476)
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- PWM
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View
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- Consensus
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NNNYGAAASH
DSTTTCRNNN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3476)
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- PWM
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View
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- Consensus
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NNNYGAWASN
NSTWTCRNNN
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- Downloads
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Download the
zip
of all Irf4 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Irf4
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=18&sourceDB=uniprobe
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| -Irf4 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH3476 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH3476 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
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- Clone pTH3476 insert sequence
- 1 NLETGSRGSE FGMSAVSCGN GKLRQWLIDQ IDSGKYPGLV WENEEKSVFR
51 IPWKHAGKQD YNREEDAALF KAWALFKGKF REGIDKPDPP TWKTRLRCAL
101 NKSNDFEELV ERSQLDISDP YKVYRIVPEG AKKGAKQLTL DDTQ
- DNA Binding Domains (Pfam) for clone 3476
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Region 22..129
1 KLRQWLIDQI DSGKYPGLVW ENEEKSVFRI PWKHAGKQDY NREEDAALFK
51 AWALFKGKFR EGIDKPDPPT WKTRLRCALN KSNDFEELVE RSQLDISDPY
101 KVYRIVPE
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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