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| -Genomic Data |
Links |
- Protein
- Sox11
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- UniPROBE Accession Number
- UP00030
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- Species
- Mus musculus
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- Domain
- HMG_box
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- Uniprot
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Q04889
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- Name and Synonyms
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SRY-box containing gene 11
1110038H03Rik, 6230403H02Rik, AI836553, end1, Sox-11, Transcription factor SOX-11
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- IHOP
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124772
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- RefSeq
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NP_033260
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- Description
- None Available
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- JASPAR
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N/A
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| -PBM Motif Data for Sox11 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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AACAAAGG E.S. 0.488
CCTTTGTT E.S. 0.488
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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AATTGTT..G E.S. 0.479
C..AACAATT E.S. 0.479
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH2266)
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- PWM
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View
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- Consensus
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HWTTGTBNNN
NNNVACAAWD
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH2266)
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- PWM
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View
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- Consensus
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NNDVACAAWR
YWTTGTBHNN
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- Downloads
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Download the
zip
of all Sox11 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Sox11
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=30&sourceDB=uniprobe
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| -Sox11 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2266 |
#1 |
AMADID #016060 |
IVT |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH2266 |
#1 |
AMADID #015681 |
IVT |
DNA binding domain only |
2014-08-13 |
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- Clone pTH2266 insert sequence
- 1 ALDESDTDWC KTASGHIKRP MNAFMVWSKI ERRKIMEQSP DMHNAEISKR
51 LGKRWKMLKD SEKIPFIREA ERLRLKHMAD YPDYKYRPRK KPKTDSAAKP
101 S
- DNA Binding Domains (Pfam) for clone 2266
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Region 17..85
1 IKRPMNAFMV WSKIERRKIM EQSPDMHNAE ISKRLGKRWK MLKDSEKIPF
51 IREAERLRLK HMADYPDYK
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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