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| -Genomic Data |
Links |
- Protein
- Eomes
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- UniPROBE Accession Number
- UP00068
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- Species
- Mus musculus
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- Domain
- TBOX
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- Uniprot
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O54839
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- Name and Synonyms
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Eomesodermin homolog (Xenopus laevis)
C77258, Eomesodermin homolog, Tbr2
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- IHOP
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120808
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- RefSeq
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NP_034266
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- Description
- Mus musculus similar to Eomesodermin homolog (LOC235673), mRNA
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- JASPAR
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N/A
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| -PBM Motif Data for Eomes |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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GGTGTGAA E.S. 0.497
TTCACACC E.S. 0.497
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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AGGTGTCG E.S. 0.493
CGACACCT E.S. 0.493
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH0921)
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- PWM
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View
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- Consensus
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NNTVDCACNH
DNGTGHBANN
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH0921)
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- PWM
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View
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- Consensus
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RRGTGYBANN
NNTVRCACYY
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- Downloads
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Download the
zip
of all Eomes PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Eomes
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=68&sourceDB=uniprobe
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| -Eomes Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH921 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH921 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
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- Clone pTH921 insert sequence
- 1 SCGGLGGLGV PGSGFRAHVY LCNRPLWLKF HRHQTEMIIT KQGRRMFPFL
51 SFNINGLNPT AHYNVFVEVV LADPNHWRFQ GGKWVTCGKA DNNMQGNRMY
101 VHPESPNTGS HWMRQEISFG KLKLTNNKGA NNNNTQMIVL QSLHKYQPRL
151 HIVEVTEDGV EDLNEPSKTQ TFTFSETQFI AVTAYQNTDI TQLKIDHNPF
201 AKGFRDNYDS MYTASENDRL TPSPTDSPRS HQIVPGGRYG VQNFF
- DNA Binding Domains (Pfam) for clone 921
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Region 18..207
1 HVYLCNRPLW LKFHRHQTEM IITKQGRRMF PFLSFNINGL NPTAHYNVFV
51 EVVLADPNHW RFQGGKWVTC GKADNNMQGN RMYVHPESPN TGSHWMRQEI
101 SFGKLKLTNN KGANNNNTQM IVLQSLHKYQ PRLHIVEVTE DGVEDLNEPS
151 KTQTFTFSET QFIAVTAYQN TDITQLKIDH NPFAKGFRDN
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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