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| -Genomic Data |
Links |
- Protein
- Gcm1
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- UniPROBE Accession Number
- UP00070
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- Species
- Mus musculus
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- Domain
- GCM
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- Uniprot
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P70348
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- Name and Synonyms
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glial cells missing homolog 1 (Drosophila)
Chorion-specific transcription factor GCMa, Gcm 1, Gcm1-rs1, Gcma, GCMa, Gcm a, GCM motif protein 1, Gcm-rs2, glial cell deficient, Glial cells missing homolog 1, glide, mGCM1, mGCMa
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- IHOP
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121222
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- RefSeq
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NP_032129
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- Description
- None Available
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- JASPAR
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N/A
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| -PBM Motif Data for Gcm1 |
- Primary Motif (Seed-And-Wobble)
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- Primary PWM
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View
Save
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- Top Kmer
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ACCCGCAT E.S. 0.497
ATGCGGGT E.S. 0.497
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- Secondary Motif (Seed-And-Wobble)
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- Secondary PWM
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View
Save
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- Top Kmer
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ATAGGGGA E.S. 0.478
TCCCCTAT E.S. 0.478
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Motif (BEEML-PBM) (AMADID # 015681)
(clone pTH3732)
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- PWM
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View
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- Consensus
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RCCCBYABNN
NNVTRVGGGY
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Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3732)
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- PWM
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View
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- Consensus
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RCCCBYABNN
NNVTRVGGGY
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- Downloads
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Download the
zip
of all Gcm1 PBM files
or view the
downloads directory
for individual files.
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- Link to TFBSshape
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This link will take you to the corresponding entry for Gcm1
in TFBSshape,
a database which provides information about the shape of the DNA at transcription factor binding sites.
http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=70&sourceDB=uniprobe
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| -Gcm1 Datasets |
| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH3732 |
#1 |
AMADID #016060 |
E. coli |
DNA binding domain only |
2014-08-13 |
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| Clone ID |
Expression |
Array Version |
Expression Protocol |
Clone Type |
Last Modified |
Save |
View |
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pTH3732 |
#1 |
AMADID #015681 |
E. coli |
DNA binding domain only |
2014-08-13 |
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- Clone pTH3732 insert sequence
- 1 MELDDFDPED KEILSWDIND VKLPQNVKTT DWFQEWPDSY VKHIYSSDDR
51 NAQRHLSSWA MRNTNNHNSR ILKKSCLGVV VCSRDCSTEE GRKIYLRPAI
101 CDKARQKQQR KSCPNCNGPL KLIPCRGHGG FPVTNFWRHD GRFIFFQSKG
151 EHDHPRPETK LEAEARRAMK KVHM
- DNA Binding Domains (Pfam) for clone 3732
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Region 29..169
1 TTDWFQEWPD SYVKHIYSSD DRNAQRHLSS WAMRNTNNHN SRILKKSCLG
51 VVVCSRDCST EEGRKIYLRP AICDKARQKQ QRKSCPNCNG PLKLIPCRGH
101 GGFPVTNFWR HDGRFIFFQS KGEHDHPRPE TKLEAEARRA M
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- References
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Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009
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