-Genomic Data Links
Protein
Hmx1
UniPROBE Accession Number
UP00104
Species
Mus musculus
Domain
Homeobox
Uniprot
O70218
Name and Synonyms
H6 homeo box 1
4930442P19Rik
IHOP
121707
Description
None Available
RefSeq
NP_034575
Hmx1 DNA binding domain
1   KKTRTVFSRS QVFQLESTFD LKRYLSSAER AGLAASLQLT ETQVKIWFQN
51  RRNKWKR
JASPAR
None Available
-PBM Motif Data for Hmx1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GCAATTAA (E.S. 0.49814)
TTAATTGC (E.S. 0.49814)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNYRHTHDN
NHDADYRNNN
Downloads
Download the zip of all Hmx1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hmx1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=104&sourceDB=uniprobe
-Hmx1 Datasets
Clone ID Expression Expression Method Save View
pTH3423 #1 E. coli save search
Clone pTH3423 insert sequence
1   PAVAAAATGE ARGGRRKKTR TVFSRSQVFQ LESTFDLKRY LSSAERAGLA
51  ASLQLTETQV KIWFQNRRNK WKRQLAAELE AASLSPPGAQ RLV
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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