-Genomic Data Links
Protein
Hlxb9
UniPROBE Accession Number
UP00123
Species
Mus musculus
Domain
Homeobox
Uniprot
Q9QZW9
Name and Synonyms
homeobox gene HB9
HB9, Homeobox protein HB9, MNR2
IHOP
121680
Description
None Available
RefSeq
NP_064328
Hlxb9 DNA binding domain
1   RRPRTAFTSQ QLLELEHQFK LNKYLSRPKR FEVATSLMLT ETQVKIWFQN
51  RRMKWKR
JASPAR
None Available
-PBM Motif Data for Hlxb9
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
A.TAATTA.T (E.S. 0.49845)
A.TAATTA.T (E.S. 0.49845)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNVBBVNYNN
NNRNBVVBNN
Downloads
Download the zip of all Hlxb9 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hlxb9 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=123&sourceDB=uniprobe
-Hlxb9 Datasets
Clone ID Expression Expression Method Save View
pTH3422 #1 E. coli save search
Clone pTH3422 insert sequence
1   MPDFSCQAQS NLLGKCRRPR TAFTSQQLLE LEHQFKLNKY LSRPKRFEVA
51  TSLMLTETQV KIWFQNRRMK WKRSKKAKEQ AAQEAEKQKG GGG
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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