-Genomic Data Links
Protein
Hoxc12
UniPROBE Accession Number
UP00135
Species
Mus musculus
Domain
Homeobox
Uniprot
P31313
Name and Synonyms
homeo box C12
Homeobox protein Hox-C12, Hox-3.8, Hoxc-12
IHOP
121744
Description
None Available
RefSeq
NP_034593
Hoxc12 DNA binding domain
1   RKKRKPYSKL QLAELEGEFL VNEFITRQRR RELSDRLNLS DQQVKIWFQN
51  RRMKKKR
JASPAR
None Available
-PBM Motif Data for Hoxc12
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GTCGTAAA (E.S. 0.49769)
TTTACGAC (E.S. 0.49769)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NDTWAYNRBN
NVYNRTWAHN
Downloads
Download the zip of all Hoxc12 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxc12 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=135&sourceDB=uniprobe
-Hoxc12 Datasets
Clone ID Expression Expression Method Save View
pTH3480 #1 E. coli save search
Clone pTH3480 insert sequence
1   GLSASGAPWY PIHSRSRKKR KPYSKLQLAE LEGEFLVNEF ITRQRRRELS
51  DRLNLSDQQV KIWFQNRRMK KKRLLLREQA LSFF
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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