-Genomic Data Links
Protein
Hoxb3
UniPROBE Accession Number
UP00137
Species
Mus musculus
Domain
Homeobox
Uniprot
P09026
Name and Synonyms
homeo box B3
Homeobox protein Hox-B3, Hox-2.7, Hoxb-3, MH-23
IHOP
121737
Description
None Available
RefSeq
NP_034588
Hoxb3 DNA binding domain
1   KRARTAYTSA QLVELEKEFH FNRYLCRPRR VEMANLLNLS ERQIKIWFQN
51  RRMKYKK
JASPAR
None Available
-PBM Motif Data for Hoxb3
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CTAATTAG (E.S. 0.49717)
CTAATTAG (E.S. 0.49717)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNYMATTAN
NTAATKRNNN
Downloads
Download the zip of all Hoxb3 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxb3 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=137&sourceDB=uniprobe
-Hoxb3 Datasets
Clone ID Expression Expression Method Save View
pTH1720 #1 E. coli save search
Clone pTH1720 insert sequence
1   GGGGGGDKSP PGSAASKRAR TAYTSAQLVE LEKEFHFNRY LCRPRRVEMA
51  NLLNLSERQI KIWFQNRRMK YKKDQKAKGL ASSSGGPSPA GSP
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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