-Genomic Data Links
Protein
Barx2
UniPROBE Accession Number
UP00151
Species
Mus musculus
Domain
Homeobox
Uniprot
O08686
Name and Synonyms
BarH-like homeobox 2
2310006E12Rik, Barx2b, Homeobox protein BarH-like 2
IHOP
119649
Description
None Available
RefSeq
NP_038828
Barx2 DNA binding domain
1   RRSRTIFTEL QLMGLEKKFQ KQKYLSTPDR LDLAQSLGLT QLQVKTWYQN
51  RRMKWKK
JASPAR
None Available
-PBM Motif Data for Barx2
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
A.TAATTA.T (E.S. 0.49764)
A.TAATTA.T (E.S. 0.49764)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNTAABNDNN
NNHNVTTANN
Downloads
Download the zip of all Barx2 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Barx2 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=151&sourceDB=uniprobe
-Barx2 Datasets
Clone ID Expression Expression Method Save View
pTH3447 #1 IVT save search
Clone pTH3447 insert sequence
1   SSESETEQPT PRQKKPRRSR TIFTELQLMG LEKKFQKQKY LSTPDRLDLA
51  QSLGLTQLQV KTWYQNRRMK WKKMVLKGGQ EAPTKPKGRP KKN
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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