-Genomic Data Links
Protein
Six2
UniPROBE Accession Number
UP00159
Species
Mus musculus
Domain
Homeobox
Uniprot
Q62232
Name and Synonyms
sine oculis-related homeobox 2 homolog (Drosophila)
Homeobox protein SIX2, Sine oculis homeobox homolog 2
IHOP
124634
Description
None Available
RefSeq
NP_035510
Six2 DNA binding domain
1   ETSYCFKEKS RSVLREWYAH NPYPSPREKR ELAEATGLTT TQVSNWFKNR
51  RQRDRA
JASPAR
None Available
-PBM Motif Data for Six2
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GGGTATCA (E.S. 0.49763)
TGATACCC (E.S. 0.49763)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNRKRTNNN
NNNAYMYNNN
Downloads
Download the zip of all Six2 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Six2 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=159&sourceDB=uniprobe
-Six2 Datasets
Clone ID Expression Expression Method Save View
pTH2307 #1 E. coli save search
Clone pTH2307 insert sequence
1   RVRRKFPLPR SIWDGEETSY CFKEKSRSVL REWYAHNPYP SPREKRELAE
51  ATGLTTTQVS NWFKNRRQRD RAAEAKEREN SENSNSSSHN PL
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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