-Genomic Data Links
Protein
Hoxa7
UniPROBE Accession Number
UP00164
Species
Mus musculus
Domain
Homeobox
Uniprot
P02830
Name and Synonyms
homeo box A7
AV118143, Homeobox protein Hox-A7, Hox-1.1, Hoxa-7, M6, M6-12
IHOP
121732
Description
None Available
RefSeq
NP_034585
Hoxa7 DNA binding domain
1   KRGRQTYTRY QTLELEKEFH FNRYLTRRRR IEIAHALCLT ERQIKIWFQN
51  RRMKWKK
JASPAR
None Available
-PBM Motif Data for Hoxa7
Primary Motif (clone pTH2668 )  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TTAATTAA (E.S. 0.49512)
TTAATTAA (E.S. 0.49512)
Primary Motif (clone pTH2668 )  (BEEML-PBM)
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Primary PWM
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Consensus
NNHNRTWNNN
NNNWAYNDNN
Primary Motif (clone pTH3750 )  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
A.TAATTA.T (E.S. 0.49403)
A.TAATTA.T (E.S. 0.49403)
Primary Motif (clone pTH3750 )  (BEEML-PBM)
Image Not Available. We apologize for the inconvenience.
Primary PWM
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Consensus
NVBBRNNNNN
NNNNNYVVBN
Downloads
Download the zip of all Hoxa7 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxa7 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=164&sourceDB=uniprobe
-Hoxa7 Datasets
Clone ID Expression Expression Method Save View
pTH2668 #1 E. coli save search
pTH3750 #1 IVT save search
Clone pTH2668 insert sequence
1   ASFRIYPWMR SSGPDRKRGR QTYTRYQTLE LEKEFHFNRY LTRRRRIEIA
51  HALCLTERQI KIWFQNRRMK WKKEHKDESQ APTAAPEDAV PSV
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


Clone pTH3750 insert sequence
1    MSSSYYVNAL FSKYTAGASL FQNAEPTSCS FAPNSQRSGY GPGAGAFAST
51   VPGLYNVNSP LYQSPFASGY GLGADAYNLP CASYDQNIPG LCSDLAKGAC
101  DKADEGVLHG PAEASFRIYP WMRSSGPDRK RGRQTYTRYQ TLELEKEFHF
151  NRYLTRRRRI EIAHALCLTE RQIKIWFQNR RMKWKKEHKD ESQAPTAAPE
201  DAVPSVSTAA DKADEEEEEE EEEEEEEEE
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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