-Genomic Data Links
Protein
Titf1
UniPROBE Accession Number
UP00165
Species
Mus musculus
Domain
Homeobox
Uniprot
P50220
Name and Synonyms
thyroid transcription factor 1
AV026640, Homeobox protein Nkx-2.1, Nkx2.1, Nkx-2.1, Nkx2-1, T/EBP, Thyroid nuclear factor 1, thyroid-specific enhancer-binding protein, Thyroid transcription factor 1, tinman, Ttf1, Ttf-1, TTF-1
IHOP
125589
Description
None Available
RefSeq
NP_033411
Titf1 DNA binding domain
1   RKRRVLFSQA QVYELERRFK QQKYLSAPER EHLASMIHLT PTQVKIWFQN
51  HRYKMKR
JASPAR
None Available
-PBM Motif Data for Titf1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CCACTTGA (E.S. 0.49822)
TCAAGTGG (E.S. 0.49822)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNYHCTYNN
NNRAGDRNNN
Downloads
Download the zip of all Titf1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Titf1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=165&sourceDB=uniprobe
-Titf1 Datasets
Clone ID Expression Expression Method Save View
pTH1722 #1 IVT save search
Clone pTH1722 insert sequence
1   LGDVSKNMAP LPSAPRRKRR VLFSQAQVYE LERRFKQQKY LSAPEREHLA
51  SMIHLTPTQV KIWFQNHRYK MKRQAKDKAA QQQLQQDSGG GGA
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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