-Genomic Data Links
Protein
Barhl1
UniPROBE Accession Number
UP00166
Species
Mus musculus
Domain
Homeobox
Uniprot
P63157
Name and Synonyms
BarH-like 1 (Drosophila)
Bar-class homeodomain protein MBH2, BarH-like 1 homeobox protein, BarH-related homeobox protein 1, Bhx1, Dres115, Mbh2, MBH2
IHOP
129098
Description
None Available
RefSeq
NP_062319
Barhl1 DNA binding domain
1   RKARTAFTDH QLAQLERSFE RQKYLSVQDR MELAASLNLT DTQVKTWYQN
51  RRTKWKR
JASPAR
None Available
-PBM Motif Data for Barhl1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
C.A.CAATTA (E.S. 0.49558)
TAATTG.T.G (E.S. 0.49558)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNTAAWNRNN
NNYNWTTANN
Downloads
Download the zip of all Barhl1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Barhl1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=166&sourceDB=uniprobe
-Barhl1 Datasets
Clone ID Expression Expression Method Save View
pTH2590 #1 E. coli save search
Clone pTH2590 insert sequence
1   EISSSRGSPP VRLKKPRKAR TAFTDHQLAQ LERSFERQKY LSVQDRMELA
51  ASLNLTDTQV KTWYQNRRTK WKRQTAVGLE LLAEAGNYSA LQR
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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