-Genomic Data Links
Protein
Hoxd8
UniPROBE Accession Number
UP00168
Species
Mus musculus
Domain
Homeobox
Uniprot
P23463
Name and Synonyms
homeo box D8
4921540P06Rik, AI047735, Homeobox protein Hox-D8, Hox-4.3, Hox-5.4, Hoxd-8
IHOP
121758
Description
None Available
RefSeq
XP_917262
Hoxd8 DNA binding domain
1   RRGRQTYSRF QTLELEKEFL FNPYLTRKRR IEVSHTLALT ERQVKIWFQN
51  RRMKWKK
JASPAR
None Available
-PBM Motif Data for Hoxd8
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
A..AATTAAT (E.S. 0.49484)
ATTAATT..T (E.S. 0.49484)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNWWYNDNN
NNHNRWWNNN
Downloads
Download the zip of all Hoxd8 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxd8 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=168&sourceDB=uniprobe
-Hoxd8 Datasets
Clone ID Expression Expression Method Save View
pTH2644 #1 E. coli save search
Clone pTH2644 insert sequence
1   PSQMFPWMRP QAAPGRRRGR QTYSRFQTLE LEKEFLFNPY LTRKRRIEVS
51  HTLALTERQV KIWFQNRRMK WKKENNKDKF PASRPEAKDG DPK
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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