-Genomic Data Links
Protein
Prop1
UniPROBE Accession Number
UP00172
Species
Mus musculus
Domain
Homeobox
Uniprot
P97458
Name and Synonyms
paired like homeodomain factor 1
df, Homeobox protein prophet of Pit-1, Pituitary-specific homeodomain factor, Prop-1, PROP-1, prophet of Pit1, prophet of Pit-1
IHOP
123768
Description
None Available
RefSeq
NP_032962
Prop1 DNA binding domain
1   RRHRTTFNPA QLEQLESAFG RNQYPDIWAR EGLAQDTGLS EARIQVWFQN
51  RRAKQRK
JASPAR
None Available
-PBM Motif Data for Prop1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TTAATTAA (E.S. 0.49943)
TTAATTAA (E.S. 0.49943)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNNRADDDN
NHHHTYNNNN
Downloads
Download the zip of all Prop1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Prop1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=172&sourceDB=uniprobe
-Prop1 Datasets
Clone ID Expression Expression Method Save View
pTH3949 #1 IVT save search
Clone pTH3949 insert sequence
1   LGRPKLCPQR GRPHSRRRHR TTFNPAQLEQ LESAFGRNQY PDIWAREGLA
51  QDTGLSEARI QVWFQNRRAK QRKQERSLLQ PIAHLSTATF SGF
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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