-Genomic Data Links
Protein
Hoxa2
UniPROBE Accession Number
UP00174
Species
Mus musculus
Domain
Homeobox
Uniprot
P31245
Name and Synonyms
homeo box A2
AI324701, Homeobox protein Hox-A2, Hox1.11, HOX1.11, Hox-1.11, Hoxa-2
IHOP
121727
Description
None Available
RefSeq
NP_034581
Hoxa2 DNA binding domain
1   RRLRTAYTNT QLLELEKEFH FNKYLCRPRR VEIAALLDLT ERQVKVWFQN
51  RRMKHKR
JASPAR
None Available
-PBM Motif Data for Hoxa2
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
G.TAATTA.C (E.S. 0.49891)
G.TAATTA.C (E.S. 0.49891)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNTAATKRNN
NNYMATTANN
Downloads
Download the zip of all Hoxa2 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Hoxa2 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=174&sourceDB=uniprobe
-Hoxa2 Datasets
Clone ID Expression Expression Method Save View
pTH3079 #1 IVT save search
Clone pTH3079 insert sequence
1   GHKESLEIAD GSGGGSRRLR TAYTNTQLLE LEKEFHFNKY LCRPRRVEIA
51  ALLDLTERQV KVWFQNRRMK HKRQTQCKEN QNSEGKFKNL EDS
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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