-Genomic Data Links
Protein
Lhx9
UniPROBE Accession Number
UP00175
Species
Mus musculus
Domain
Homeobox
Uniprot
Q9WUH2
Name and Synonyms
LIM homeobox protein 9
BB104635, LH2B, Lhx9 alpha, LIM/homeobox protein Lhx9
IHOP
122525
Description
None Available
RefSeq
NP_034844
Lhx9 DNA binding domain
1   KRMRTSFKHH QLRTMKSYFA INHNPDAKDL KQLAQKTGLT KRVLQVWFQN
51  ARAKFRR
JASPAR
None Available
-PBM Motif Data for Lhx9
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TTAATTAA (E.S. 0.49771)
TTAATTAA (E.S. 0.49771)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNYHATTAN
NTAATDRNNN
Downloads
Download the zip of all Lhx9 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Lhx9 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=175&sourceDB=uniprobe
-Lhx9 Datasets
Clone ID Expression Expression Method Save View
pTH3492 #1 IVT save search
Clone pTH3492 insert sequence
1   DHLDRDQQPY PPSQKTKRMR TSFKHHQLRT MKSYFAINHN PDAKDLKQLA
51  QKTGLTKRVL QVWFQNARAK FRRNLLRQEN GGVDKADGTS LPA
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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