-Genomic Data Links
Protein
Obox5
UniPROBE Accession Number
UP00208
Species
Mus musculus
Domain
Homeobox
Uniprot
Q7TPZ5
Name and Synonyms
oocyte specific homeobox 5
None Available
IHOP
155890
Description
None Available
RefSeq
NP_663755
Obox5 DNA binding domain
1   RKERTVYTKE QQRLLQKHFD ECQYPNEKKI MELAVSVGVT KMEIKIWFKN
51  NRAKYRR
JASPAR
None Available
-PBM Motif Data for Obox5
Primary Motif (clone pTH2284 )  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GGGATTAA (E.S. 0.49809)
TTAATCCC (E.S. 0.49809)
Primary Motif (clone pTH2284 )  (BEEML-PBM)
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Primary PWM
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Consensus
NNDATWWNNN
NNNWWATHNN
Primary Motif (clone pTH3963 )  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
GGATTAA.T (E.S. 0.49734)
A.TTAATCC (E.S. 0.49734)
Primary Motif (clone pTH3963 )  (BEEML-PBM)
Image Not Available. We apologize for the inconvenience.
Primary PWM
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Consensus
NNWDWTNNNN
NNNNAWHWNN
Downloads
Download the zip of all Obox5 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Obox5 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=208&sourceDB=uniprobe
-Obox5 Datasets
Clone ID Expression Expression Method Save View
pTH2284 #1 IVT save search
pTH3963 #1 E. coli save search
Clone pTH2284 insert sequence
1   DKYVNKQTGP MASRKFRKER TVYTKEQQRL LQKHFDECQY PNEKKIMELA
51  VSVGVTKMEI KIWFKNNRAK YRRMNLQNIK QALPESNESS KAV
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


Clone pTH3963 insert sequence
1   LYKQTGPMLS RKFRKERTVY TKEQQRLLQK HFDECQYPNE KKIMELAVSV
51  GVTKMEIKIW FKNNRAKYRR MNLQNIKQAL PESNGISKAV
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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