-Genomic Data Links
Protein
Bapx1
UniPROBE Accession Number
UP00228
Species
Mus musculus
Domain
Homeobox
Uniprot
P97503
Name and Synonyms
bagpipe homeobox gene 1 homolog (Drosophila)
Bagpipe homeobox protein homolog 1, Homeobox protein Nkx-3.2, NKX3.2, Nkx-3.2, Nkx3-2, Nkx3b
IHOP
119646
Description
None Available
RefSeq
NP_031550
Bapx1 DNA binding domain
1   KRSRAAFSHA QVFELERRFN HQRYLSGPER ADLAASLKLT ETQVKIWFQN
51  RRYKTKR
JASPAR
MA0122
-PBM Motif Data for Bapx1
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CCACTTAA (E.S. 0.49836)
TTAAGTGG (E.S. 0.49836)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNNYHCTYNN
NNRAGDRNNN
Downloads
Download the zip of all Bapx1 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Bapx1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=228&sourceDB=uniprobe
-Bapx1 Datasets
Clone ID Expression Expression Method Save View
pTH2343 #1 IVT save search
Clone pTH2343 insert sequence
1   GGVEEEEEPA APKPRKKRSR AAFSHAQVFE LERRFNHQRY LSGPERADLA
51  ASLKLTETQV KIWFQNRRYK TKRRQMAADL LASAPAAKKV AVK
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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