-Genomic Data Links
Protein
Rax
UniPROBE Accession Number
UP00253
Species
Mus musculus
Domain
Homeobox
Uniprot
O35602
Name and Synonyms
retina and anterior neural fold homeobox
7530406A22Rik, E130303K03Rik, ey1, ey-1, Retina and anterior neural fold homeobox protein, Retinal homeobox protein Rx, Rx
IHOP
123978
Description
None Available
RefSeq
NP_038861
Rax DNA binding domain
1   RRNRTTFTTY QLHELERAFE KSHYPDVYSR EELAGKVNLP EVRVQVWFQN
51  RRAKWRR
JASPAR
None Available
-PBM Motif Data for Rax
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
CTAATTAG (E.S. 0.49891)
CTAATTAG (E.S. 0.49891)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNYAATTANN
NNTAATTRNN
Downloads
Download the zip of all Rax PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Rax in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=253&sourceDB=uniprobe
-Rax Datasets
Clone ID Expression Expression Method Save View
pTH3443 #1 E. coli save search
Clone pTH3443 insert sequence
1   AGDSKLSEEE PPKKKHRRNR TTFTTYQLHE LERAFEKSHY PDVYSREELA
51  GKVNLPEVRV QVWFQNRRAK WRRQEKLEVS SMKLQDSPLL SFI
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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