-Genomic Data Links
Protein
Shox2
UniPROBE Accession Number
UP00257
Species
Mus musculus
Domain
Homeobox
Uniprot
P70390
Name and Synonyms
short stature homeobox 2
6330543G17Rik, Homeobox protein Og12X, OG12, OG-12, Og12x, Paired family homeodomain protein Prx3, Prx3, Short stature homeobox protein 2, SHOT
IHOP
124599
Description
None Available
RefSeq
NP_038693
Shox2 DNA binding domain
1   RRSRTNFTLE QLNELERLFD ETHYPDAFMR EELSQRLGLS EARVQVWFQN
51  RRAKCRK
JASPAR
None Available
-PBM Motif Data for Shox2
Primary Motif  (Seed-and-Wobble)
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Primary PWM
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Top Kmer
TTAATTAA (E.S. 0.49866)
TTAATTAA (E.S. 0.49866)
Primary Motif  (BEEML-PBM)
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Primary PWM
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Consensus
NNHHATTANN
NNTAATDDNN
Downloads
Download the zip of all Shox2 PBM files or view the downloads directory for individual files. Please note that the files which include probe sequence data are protected by an academic research use license, which can be viewed here.
Link to TFBSshape
This link will take you to the corresponding entry for Shox2 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=257&sourceDB=uniprobe
-Shox2 Datasets
Clone ID Expression Expression Method Save View
pTH2641 #1 E. coli save search
Clone pTH2641 insert sequence
1   DDAKGMEDEG QTKIKQRRSR TNFTLEQLNE LERLFDETHY PDAFMREELS
51  QRLGLSEARV QVWFQNRRAK CRKQENQLHK GVLIGAASQF EAC
References
Data are analyzed by array design with AMADID # 015681 in Berger et al., Cell 2008


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