-Genomic Data Links
Protein
Gata6
UniPROBE Accession Number
UP00100
Species
Mus musculus
Domain
GATA
Name and Synonyms
GATA binding protein 6
AA410133, GATA-6, GATA-binding factor 6, Transcription factor GATA-6
Description
None Available
-PBM Motif Data for Gata6
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
AGATAAGA E.S. 0.491
TCTTATCT E.S. 0.491
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
CGATATCG E.S. 0.484
CGATATCG E.S. 0.484
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH3769)
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PWM
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Consensus
NNHGATARNN
NNYTATCDNN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH3769)
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PWM
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Consensus
NNNHGATWDN
NHWATCDNNN
Downloads
Download the zip of all Gata6 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Gata6 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=100&sourceDB=uniprobe

-Gata6 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3769 #1 AMADID #016060 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH3769 #1 AMADID #015681 E. coli DNA binding domain only 2016-03-24 save search
Clone pTH3769 insert sequence
1    PLPVPRGPST DLLEDLSESR ECVNCGSIQT PLWRRDGTGH YLCNACGLYS
51   KMNGLSRPLI KPQKRVPSSR RLGLSCANCH TTTTTLWRRN AEGEPVCNAC
101  GLYMKLHGVP RPLAMKKEGI QTRKRKPKNI NKSKA

DNA Binding Domains (Pfam) for clone 3769
Region 22..56
1   CVNCGSIQTP LWRRDGTGHY LCNACGLYSK MNGLS

Region 76..110
1   CANCHTTTTT LWRRNAEGEP VCNACGLYMK LHGVP
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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