-Genomic Data Links
Protein
Zic1
UniPROBE Accession Number
UP00102
Species
Mus musculus
Domain
zf-C2H2
Name and Synonyms
Zinc finger protein of the cerebellum 1
odd-paired homolog, Zic, ZIC, Zinc finger protein of the cerebellum 1, Zinc finger protein ZIC 1, ZNF201
Description
Mus musculus similar to zic protein member 1 (Zic1), mRNA
-PBM Motif Data for Zic1
Primary Motif (Seed-And-Wobble)
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Primary PWM
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Top Kmer
CCCC..GGGG E.S. 0.495
CCCC..GGGG E.S. 0.495
Secondary Motif (Seed-And-Wobble)
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Secondary PWM
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Top Kmer
C.CAGCAGG E.S. 0.493
CCTGCTG.G E.S. 0.493
Motif (BEEML-PBM) (AMADID # 015681)   (clone pTH0991)
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PWM
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Consensus
NCMYVBNGNK
MNCNVBRKGN
Motif (BEEML-PBM) (AMADID # 016060) (clone pTH0991)
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PWM
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Consensus
VNYNRBRKGN
NCMYVYNRNB
Downloads
Download the zip of all Zic1 PBM files or view the downloads directory for individual files.
Link to TFBSshape
This link will take you to the corresponding entry for Zic1 in TFBSshape, a database which provides information about the shape of the DNA at transcription factor binding sites.

http://rohslab.cmb.usc.edu/TFBSshape/?tfid=&geneID=102&sourceDB=uniprobe

-Zic1 Datasets
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH991 #1 AMADID #016060 E. coli DNA binding domain only 2016-03-24 save search
Clone ID Expression Array Version Expression Protocol Clone Type Last Modified Save View
pTH991 #1 AMADID #015681 E. coli DNA binding domain only 2016-03-24 save search
Clone pTH991 insert sequence
1    QELICKWIEP EQLANPKKSC NKTFSTMHEL VTHVTVEHVG GPEQSNHICF
51   WEECPREGKP FKAKYKLVNH IRVHTGEKPF PCPFPGCGKV FARSENLKIH
101  KRTHTGEKPF KCEFEGCDRR FANSSDRKKH MHVHTSDKPY LCKMCDKSYT
151  HPSSLRKHMK VHESPSQGSQ PSPAASSG

DNA Binding Domains (Pfam) for clone 991
Region 80..104
1   FPCPFPGCGK VFARSENLKI HKRTH

Region 110..134
1   FKCEFEGCDR RFANSSDRKK HMHVH

Region 140..162
1   YLCKMCDKSY THPSSLRKHM KVH
References
Data are analyzed by array designs with AMADID #s 016060, 015681 in Badis et al., Science 2009


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